Mutagenetix > Incidental Mutations

Incidental Mutation 'R4909:Zfp280d'

434648

Institutional Source

Beutler Lab

Gene Symbol

Zfp280d

Ensembl Gene

ENSMUSG00000038535

Gene Name

zinc finger protein 280D

Synonyms

Suhw4

MMRRC Submission

042511-MU

Accession Numbers

Ncbi RefSeq: NM_146224.4; MGI:2384583

Is this an essential gene?

Possibly non essential (E-score: 0.321) question?

Stock #

R4909 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

72274860-72363777 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 72331432 bp

Zygosity

Heterozygous

Amino Acid Change

Serine to Glycine at position 63 (S63G)

Ref Sequence

ENSEMBL: ENSMUSP00000138994 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098576] [ENSMUST00000183410] [ENSMUST00000183801] [ENSMUST00000184019] [ENSMUST00000184036] [ENSMUST00000184053] [ENSMUST00000184399] [ENSMUST00000184517]

Predicted Effect

probably damaging
Transcript: ENSMUST00000098576
AA Change: S677G

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000096175
Gene: ENSMUSG00000038535
AA Change: S677G

Domain	Start	End	E-Value	Type
low complexity region	28	39	N/A	INTRINSIC
low complexity region	43	55	N/A	INTRINSIC
Pfam:DUF4195	57	241	6.8e-82	PFAM
ZnF_C2H2	252	272	1.24e2	SMART
ZnF_C2H2	333	355	6.92e0	SMART
ZnF_C2H2	370	393	3.99e0	SMART
ZnF_C2H2	400	423	1.08e-1	SMART
ZnF_C2H2	430	453	3.52e-1	SMART
ZnF_C2H2	459	481	2.41e1	SMART
ZnF_C2H2	487	509	3.38e1	SMART
low complexity region	539	561	N/A	INTRINSIC
low complexity region	591	611	N/A	INTRINSIC
ZnF_C2H2	656	679	1.23e1	SMART
ZnF_C2H2	702	726	1.34e2	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000183410
AA Change: S677G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000139250
Gene: ENSMUSG00000038535
AA Change: S677G

Domain	Start	End	E-Value	Type
low complexity region	28	39	N/A	INTRINSIC
low complexity region	43	55	N/A	INTRINSIC
Pfam:DUF4195	57	242	4.1e-98	PFAM
ZnF_C2H2	252	272	1.24e2	SMART
ZnF_C2H2	333	355	6.92e0	SMART
ZnF_C2H2	370	393	3.99e0	SMART
ZnF_C2H2	400	423	1.08e-1	SMART
ZnF_C2H2	430	453	3.52e-1	SMART
ZnF_C2H2	459	481	2.41e1	SMART
ZnF_C2H2	487	509	3.38e1	SMART
low complexity region	539	561	N/A	INTRINSIC
low complexity region	591	611	N/A	INTRINSIC
ZnF_C2H2	656	679	1.23e1	SMART
ZnF_C2H2	702	726	1.34e2	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000183459

Predicted Effect

probably benign
Transcript: ENSMUST00000183801

SMART Domains

Protein: ENSMUSP00000139091
Gene: ENSMUSG00000038535

Domain	Start	End	E-Value	Type
low complexity region	28	39	N/A	INTRINSIC
low complexity region	43	55	N/A	INTRINSIC
Pfam:DUF4195	57	242	1.9e-98	PFAM
ZnF_C2H2	252	272	1.24e2	SMART
ZnF_C2H2	333	355	6.92e0	SMART
ZnF_C2H2	370	393	3.99e0	SMART
ZnF_C2H2	400	423	1.08e-1	SMART
ZnF_C2H2	430	453	3.52e-1	SMART
ZnF_C2H2	459	481	2.41e1	SMART
ZnF_C2H2	487	509	3.38e1	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000184019
AA Change: S63G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000138994
Gene: ENSMUSG00000038535
AA Change: S63G

Domain	Start	End	E-Value	Type
ZnF_C2H2	42	65	1.23e1	SMART
ZnF_C2H2	88	112	1.34e2	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000184025

Predicted Effect

probably damaging
Transcript: ENSMUST00000184036
AA Change: S652G

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000138857
Gene: ENSMUSG00000038535
AA Change: S652G

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
low complexity region	18	30	N/A	INTRINSIC
Pfam:DUF4195	32	217	5.5e-98	PFAM
ZnF_C2H2	227	247	1.24e2	SMART
ZnF_C2H2	308	330	6.92e0	SMART
ZnF_C2H2	345	368	3.99e0	SMART
ZnF_C2H2	375	398	1.08e-1	SMART
ZnF_C2H2	405	428	3.52e-1	SMART
ZnF_C2H2	434	456	2.41e1	SMART
ZnF_C2H2	462	484	3.38e1	SMART
low complexity region	514	536	N/A	INTRINSIC
low complexity region	566	586	N/A	INTRINSIC
ZnF_C2H2	631	654	1.23e1	SMART
ZnF_C2H2	677	701	1.34e2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000184053

SMART Domains

Protein: ENSMUSP00000138848
Gene: ENSMUSG00000038535

Domain	Start	End	E-Value	Type
low complexity region	28	39	N/A	INTRINSIC
low complexity region	43	55	N/A	INTRINSIC
Pfam:DUF4195	57	147	1e-48	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000184141

Predicted Effect

probably benign
Transcript: ENSMUST00000184399

SMART Domains

Protein: ENSMUSP00000138902
Gene: ENSMUSG00000038535

Domain	Start	End	E-Value	Type
low complexity region	28	39	N/A	INTRINSIC
low complexity region	43	55	N/A	INTRINSIC
Pfam:DUF4195	57	103	4.8e-23	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000184517
AA Change: S677G

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000138970
Gene: ENSMUSG00000038535
AA Change: S677G

Domain	Start	End	E-Value	Type
low complexity region	28	39	N/A	INTRINSIC
low complexity region	43	55	N/A	INTRINSIC
Pfam:DUF4195	57	242	2.2e-98	PFAM
ZnF_C2H2	252	272	1.24e2	SMART
ZnF_C2H2	333	355	6.92e0	SMART
ZnF_C2H2	370	393	3.99e0	SMART
ZnF_C2H2	400	423	1.08e-1	SMART
ZnF_C2H2	430	453	3.52e-1	SMART
ZnF_C2H2	459	481	2.41e1	SMART
ZnF_C2H2	487	509	3.38e1	SMART
low complexity region	539	561	N/A	INTRINSIC
low complexity region	591	611	N/A	INTRINSIC
ZnF_C2H2	656	679	1.23e1	SMART
ZnF_C2H2	702	726	1.34e2	SMART

Meta Mutation Damage Score

0.1998

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.1%
20x: 91.7%

Validation Efficiency

97% (101/104)

Allele List at MGI

All alleles(100) : Targeted(2) Gene trapped(98)

Other mutations in this stock

Total: 92 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700030C10Rik	A	T	12: 20,815,088		noncoding transcript	Het
A830010M20Rik	C	T	5: 107,507,310	Q992*	probably null	Het
Aars	G	A	8: 111,055,083	G929D	probably damaging	Het
Ablim2	C	T	5: 35,802,422	R73C	possibly damaging	Het
Actn4	A	T	7: 28,898,657	L506Q	probably damaging	Het
Adam26a	A	T	8: 43,570,438	F5Y	probably benign	Het
Adamts5	G	A	16: 85,900,066	Q68*	probably null	Het
Adcy9	A	G	16: 4,298,754	I871T	probably benign	Het
Ak5	A	T	3: 152,655,877	L136H	probably damaging	Het
Ap1g2	A	G	14: 55,105,026		probably null	Het
Ap2a1	G	A	7: 44,906,381	T355M	probably damaging	Het
Ap3s2	T	C	7: 79,915,241	D60G	possibly damaging	Het
Apold1	G	A	6: 134,983,595	R4Q	probably benign	Het
Atp13a5	G	T	16: 29,334,028	Q207K	possibly damaging	Het
BC035947	A	C	1: 78,498,029	I622S	probably damaging	Het
Bmper	G	T	9: 23,377,725	V339F	probably benign	Het
C1ra	A	G	6: 124,522,334	D493G	probably damaging	Het
C3	C	T	17: 57,226,830		probably null	Het
Cabp4	T	A	19: 4,137,121	I209F	possibly damaging	Het
Cacna1s	A	T	1: 136,079,604	H453L	probably damaging	Het
Camk2g	A	G	14: 20,792,584	V32A	probably benign	Het
Ccdc175	G	A	12: 72,159,753	R240C	probably damaging	Het
Cdk13	C	T	13: 17,772,403	S590N	possibly damaging	Het
Cfap45	A	T	1: 172,529,876	T24S	probably benign	Het
Clca1	T	G	3: 145,024,563	K174Q	probably damaging	Het
Col1a2	G	A	6: 4,529,058		probably benign	Het
Colgalt1	A	T	8: 71,620,633	I323F	possibly damaging	Het
Cpeb3	T	C	19: 37,174,233	S248G	possibly damaging	Het
Cpeb3	A	T	19: 37,174,659	S106T	probably damaging	Het
Ctcfl	C	T	2: 173,095,398	A576T	probably benign	Het
Cyp4f16	T	G	17: 32,550,321	V395G	possibly damaging	Het
Dchs1	C	T	7: 105,766,255	G605S	probably damaging	Het
Egflam	A	T	15: 7,219,629	F903I	probably damaging	Het
Eif5a	G	A	11: 69,917,485	A62V	possibly damaging	Het
Fam217a	A	G	13: 34,910,406	S609P	probably damaging	Het
Fhad1	T	A	4: 141,985,511	I206F	probably benign	Het
Flt1	C	A	5: 147,683,939	A132S	probably benign	Het
Fras1	T	A	5: 96,708,758	M2000K	probably benign	Het
Frmd5	C	T	2: 121,591,653		probably null	Het
Gle1	T	C	2: 29,936,080	L57P	probably benign	Het
Glrx3	C	A	7: 137,445,036	N52K	probably damaging	Het
Grin3b	A	G	10: 79,977,104	*1004W	probably null	Het
Hectd4	T	A	5: 121,263,891	F347L	probably benign	Het
Htra1	G	A	7: 130,985,072	V462I	probably benign	Het
Itga11	A	G	9: 62,755,299	Y518C	probably damaging	Het
Krtap15	T	C	16: 88,829,365	F88L	probably benign	Het
Ktn1	A	T	14: 47,706,460	R866W	probably damaging	Het
Lamb1	G	A	12: 31,288,281	R483H	probably damaging	Het
Megf6	C	T	4: 154,265,391	R983C	probably damaging	Het
Mybpc3	T	A	2: 91,134,812	D1075E	probably benign	Het
Myo7b	A	T	18: 31,964,436	N1792K	probably benign	Het
Nabp2	A	T	10: 128,401,687		probably benign	Het
Neil3	A	G	8: 53,638,893	C7R	probably damaging	Het
Nxpe2	T	A	9: 48,319,597	I491F	possibly damaging	Het
Obscn	A	G	11: 59,061,465	V4292A	possibly damaging	Het
Ogfod3	A	G	11: 121,197,492	S139P	probably damaging	Het
Olfr374	A	G	8: 72,109,581	N5S	probably damaging	Het
Olfr418	A	T	1: 173,270,979	D268V	probably damaging	Het
Olfr682-ps1	C	A	7: 105,128,228	V70L	probably benign	Het
Olfr800	A	G	10: 129,660,720	I305V	probably benign	Het
Oog2	T	C	4: 144,195,099	I211T	possibly damaging	Het
Oosp1	T	C	19: 11,688,716	D70G	probably benign	Het
Padi3	T	C	4: 140,795,626	D345G	probably damaging	Het
Pcyt2	A	G	11: 120,615,420	F71L	probably benign	Het
Pi4k2b	T	C	5: 52,754,629		probably benign	Het
Pigr	A	C	1: 130,848,458	T577P	possibly damaging	Het
Pirb	G	A	7: 3,719,362	Q161*	probably null	Het
Pnlip	A	G	19: 58,676,240	E204G	possibly damaging	Het
Pop7	G	T	5: 137,501,899	D57E	probably benign	Het
Ppfia4	A	T	1: 134,332,501	I8N	probably damaging	Het
Pprc1	A	G	19: 46,064,319	T759A	probably damaging	Het
Prom1	T	C	5: 44,045,552	N213S	probably benign	Het
Prop1	GCTTCACT	GCTTCACTTCACT	11: 50,952,036		probably null	Het
Prop1	A	T	11: 50,952,045	L105H	probably damaging	Het
Pwp2	A	T	10: 78,182,494	M121K	possibly damaging	Het
Rap1gds1	A	T	3: 138,983,748	M161K	possibly damaging	Het
Rps6kb2	T	A	19: 4,157,003		probably benign	Het
Rxfp1	A	G	3: 79,644,802	S731P	probably benign	Het
Scfd1	T	C	12: 51,390,412	V137A	probably benign	Het
Slc6a15	G	A	10: 103,404,414	D333N	probably damaging	Het
Sqor	T	C	2: 122,785,181	V74A	possibly damaging	Het
Stil	T	A	4: 115,024,225	Y655*	probably null	Het
Syt14	A	T	1: 192,898,859	I468K	probably damaging	Het
Tbc1d31	T	C	15: 57,962,265		probably null	Het
Tspyl5	A	T	15: 33,686,849	S317T	probably damaging	Het
Ttf1	C	T	2: 29,064,656	H11Y	possibly damaging	Het
Ttf2	T	C	3: 100,954,315	T620A	probably damaging	Het
Usp32	G	A	11: 85,055,772	Q269*	probably null	Het
Vsig10	T	A	5: 117,338,243	V254E	probably benign	Het
Wdr6	C	T	9: 108,572,988	A1114T	probably benign	Het
Zfp607b	A	G	7: 27,703,796	D559G	probably benign	Het
Zfp934	T	C	13: 62,517,954	H291R	probably damaging	Het

Other mutations in Zfp280d

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00504:Zfp280d	APN	9	72322571	missense	probably damaging	1.00
IGL00708:Zfp280d	APN	9	72312135	missense	probably benign	0.19
IGL01333:Zfp280d	APN	9	72335114	splice site	probably benign
IGL01453:Zfp280d	APN	9	72322586	missense	possibly damaging	0.90
IGL02472:Zfp280d	APN	9	72301711	missense	probably damaging	1.00
IGL02583:Zfp280d	APN	9	72322445	splice site	probably benign
IGL02608:Zfp280d	APN	9	72307979	missense	probably damaging	0.98
IGL02675:Zfp280d	APN	9	72312222	missense	probably benign	0.33
IGL02676:Zfp280d	APN	9	72335074	missense	probably damaging	1.00
IGL02931:Zfp280d	APN	9	72296025	missense	probably benign	0.02
IGL03076:Zfp280d	APN	9	72312662	missense	probably damaging	0.99
R0017:Zfp280d	UTSW	9	72339010	critical splice acceptor site	probably null
R0017:Zfp280d	UTSW	9	72339010	critical splice acceptor site	probably null
R0288:Zfp280d	UTSW	9	72331339	nonsense	probably null
R0419:Zfp280d	UTSW	9	72312237	missense	probably benign	0.02
R0540:Zfp280d	UTSW	9	72307965	missense	probably damaging	0.97
R0628:Zfp280d	UTSW	9	72361948	missense	probably benign
R0722:Zfp280d	UTSW	9	72312101	missense	possibly damaging	0.63
R1055:Zfp280d	UTSW	9	72329167	splice site	probably null
R1786:Zfp280d	UTSW	9	72308005	missense	probably damaging	1.00
R1826:Zfp280d	UTSW	9	72298780	missense	probably damaging	1.00
R1962:Zfp280d	UTSW	9	72335080	nonsense	probably null
R2130:Zfp280d	UTSW	9	72308005	missense	probably damaging	1.00
R2132:Zfp280d	UTSW	9	72308005	missense	probably damaging	1.00
R2133:Zfp280d	UTSW	9	72308005	missense	probably damaging	1.00
R2143:Zfp280d	UTSW	9	72312729	missense	probably damaging	1.00
R2162:Zfp280d	UTSW	9	72298822	missense	probably damaging	1.00
R2266:Zfp280d	UTSW	9	72301770	splice site	probably benign
R2269:Zfp280d	UTSW	9	72301770	splice site	probably benign
R2278:Zfp280d	UTSW	9	72338773	nonsense	probably null
R2850:Zfp280d	UTSW	9	72312089	missense	probably benign	0.06
R3780:Zfp280d	UTSW	9	72322524	missense	probably damaging	1.00
R3950:Zfp280d	UTSW	9	72296019	missense	possibly damaging	0.49
R4330:Zfp280d	UTSW	9	72295979	missense	possibly damaging	0.86
R4716:Zfp280d	UTSW	9	72312665	missense	possibly damaging	0.94
R4876:Zfp280d	UTSW	9	72298858	splice site	probably benign
R5214:Zfp280d	UTSW	9	72308113	unclassified	probably benign
R5518:Zfp280d	UTSW	9	72324135	missense	probably damaging	0.99
R5853:Zfp280d	UTSW	9	72330942	missense	probably benign	0.20
R5945:Zfp280d	UTSW	9	72362332	nonsense	probably null
R6033:Zfp280d	UTSW	9	72329137	missense	probably damaging	1.00
R6033:Zfp280d	UTSW	9	72329137	missense	probably damaging	1.00
R7043:Zfp280d	UTSW	9	72319257	missense	probably damaging	1.00
R7501:Zfp280d	UTSW	9	72361942	missense	possibly damaging	0.65
R7658:Zfp280d	UTSW	9	72324072	missense	probably damaging	1.00
R7667:Zfp280d	UTSW	9	72301965	missense	probably damaging	1.00
R7792:Zfp280d	UTSW	9	72331319	missense	probably damaging	1.00
R7826:Zfp280d	UTSW	9	72312671	missense	possibly damaging	0.68

Predicted Primers

PCR Primer
(F):5'- GCCTCACTCTGATACATATTCCCAG -3'
(R):5'- CATAAGAATACACCGATTTGCCAG -3'

Sequencing Primer
(F):5'- TTCCCAGTTTAAACTCAAGTATAGC -3'
(R):5'- GTTTGAAAATAACCATTTCAGGGAC -3'

Posted On

2016-10-20