Incidental Mutation 'R5542:Safb2'
ID 436067
Institutional Source Beutler Lab
Gene Symbol Safb2
Ensembl Gene ENSMUSG00000042625
Gene Name scaffold attachment factor B2
Synonyms
MMRRC Submission 043100-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.604) question?
Stock # R5542 (G1)
Quality Score 225
Status Not validated
Chromosome 17
Chromosomal Location 56867965-56891585 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 56882647 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Cysteine at position 329 (R329C)
Ref Sequence ENSEMBL: ENSMUSP00000074953 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000075510] [ENSMUST00000131056] [ENSMUST00000133604] [ENSMUST00000155983] [ENSMUST00000144255]
AlphaFold Q80YR5
Predicted Effect probably damaging
Transcript: ENSMUST00000075510
AA Change: R329C

PolyPhen 2 Score 0.971 (Sensitivity: 0.77; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000074953
Gene: ENSMUSG00000042625
AA Change: R329C

DomainStartEndE-ValueType
SAP 25 59 8.21e-11 SMART
low complexity region 91 104 N/A INTRINSIC
low complexity region 162 173 N/A INTRINSIC
coiled coil region 262 285 N/A INTRINSIC
low complexity region 286 294 N/A INTRINSIC
low complexity region 318 335 N/A INTRINSIC
RRM 452 525 1.33e-19 SMART
low complexity region 557 578 N/A INTRINSIC
low complexity region 631 645 N/A INTRINSIC
coiled coil region 658 772 N/A INTRINSIC
low complexity region 798 815 N/A INTRINSIC
low complexity region 920 944 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000124457
Predicted Effect probably benign
Transcript: ENSMUST00000131056
SMART Domains Protein: ENSMUSP00000120750
Gene: ENSMUSG00000042625

DomainStartEndE-ValueType
low complexity region 44 65 N/A INTRINSIC
low complexity region 118 133 N/A INTRINSIC
coiled coil region 146 260 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000133604
SMART Domains Protein: ENSMUSP00000119324
Gene: ENSMUSG00000042625

DomainStartEndE-ValueType
SAP 25 59 8.21e-11 SMART
low complexity region 91 104 N/A INTRINSIC
low complexity region 162 173 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134497
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134741
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156640
SMART Domains Protein: ENSMUSP00000118127
Gene: ENSMUSG00000042625

DomainStartEndE-ValueType
low complexity region 62 86 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000146958
Predicted Effect noncoding transcript
Transcript: ENSMUST00000140037
Predicted Effect noncoding transcript
Transcript: ENSMUST00000146070
Predicted Effect probably benign
Transcript: ENSMUST00000155983
SMART Domains Protein: ENSMUSP00000116363
Gene: ENSMUSG00000042625

DomainStartEndE-ValueType
SAP 25 59 8.21e-11 SMART
low complexity region 91 104 N/A INTRINSIC
low complexity region 162 173 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000144255
SMART Domains Protein: ENSMUSP00000123673
Gene: ENSMUSG00000042625

DomainStartEndE-ValueType
SAP 25 59 8.21e-11 SMART
low complexity region 91 104 N/A INTRINSIC
low complexity region 162 173 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.3%
  • 20x: 95.1%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene, along with its paralog (scaffold attachment factor B1), is a repressor of estrogen receptor alpha. The encoded protein binds scaffold/matrix attachment region (S/MAR) DNA and is involved in cell cycle regulation, apoptosis, differentiation, the stress response, and regulation of immune genes. [provided by RefSeq, May 2016]
PHENOTYPE: Male homozyous mutant mice exhibit an increase in testis weight and an increased number of Sertoli cells. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 71 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadacl2 C T 3: 59,932,484 (GRCm39) T333I probably damaging Het
Acacb C T 5: 114,333,798 (GRCm39) R574C probably damaging Het
Actr10 T C 12: 71,001,430 (GRCm39) probably benign Het
Ankdd1a T A 9: 65,411,472 (GRCm39) probably null Het
Anks4b C T 7: 119,781,646 (GRCm39) Q226* probably null Het
AW146154 C A 7: 41,130,801 (GRCm39) G105V probably benign Het
Cdh4 T A 2: 179,502,019 (GRCm39) N326K probably damaging Het
Cnbd1 T C 4: 18,860,517 (GRCm39) T410A possibly damaging Het
Cndp2 A T 18: 84,690,201 (GRCm39) M247K probably damaging Het
Crx G A 7: 15,602,262 (GRCm39) R139C probably damaging Het
Ctrc A G 4: 141,571,037 (GRCm39) Y68H probably damaging Het
Ddx4 T C 13: 112,757,779 (GRCm39) D326G probably damaging Het
Edem1 C T 6: 108,831,290 (GRCm39) R584C possibly damaging Het
Emcn A G 3: 137,085,638 (GRCm39) T79A probably benign Het
Ext1 C A 15: 52,939,213 (GRCm39) W612L probably damaging Het
Fbrsl1 C T 5: 110,526,307 (GRCm39) G437R probably damaging Het
Fbxo7 A C 10: 85,869,149 (GRCm39) Q201P probably benign Het
Fbxo9 T C 9: 78,008,938 (GRCm39) M12V possibly damaging Het
Fcgbpl1 A T 7: 27,854,914 (GRCm39) I1847F probably damaging Het
Flii A G 11: 60,609,688 (GRCm39) S640P probably benign Het
Fsip2 A T 2: 82,812,207 (GRCm39) N2842I possibly damaging Het
Fst G T 13: 114,592,241 (GRCm39) Q159K probably damaging Het
Fuom A T 7: 139,680,025 (GRCm39) *109R probably null Het
Hhipl2 A G 1: 183,214,055 (GRCm39) D377G probably damaging Het
Hspa14 A G 2: 3,503,560 (GRCm39) V116A possibly damaging Het
Ighm A G 12: 113,382,601 (GRCm39) probably benign Het
Ighv1-85 T A 12: 115,963,847 (GRCm39) Y51F probably benign Het
Ighv2-3 A T 12: 113,574,833 (GRCm39) D107E probably benign Het
Ighv2-6-8 T A 12: 113,760,187 (GRCm39) M1L probably benign Het
Ipo5 T C 14: 121,163,683 (GRCm39) V247A probably benign Het
Itga9 T C 9: 118,672,729 (GRCm39) F154L possibly damaging Het
Itprid1 C A 6: 55,955,380 (GRCm39) P996Q probably damaging Het
Knl1 T A 2: 118,898,829 (GRCm39) C177S possibly damaging Het
Lrrc17 G A 5: 21,780,156 (GRCm39) G377S probably damaging Het
Marveld3 A T 8: 110,675,249 (GRCm39) I189K probably benign Het
Msantd2 G A 9: 37,428,555 (GRCm39) G185R probably damaging Het
Mtcl1 G A 17: 66,691,354 (GRCm39) probably benign Het
Muc21 T C 17: 35,933,395 (GRCm39) probably benign Het
Mycbpap A T 11: 94,398,572 (GRCm39) probably null Het
Nbeal1 A G 1: 60,316,353 (GRCm39) D1852G probably benign Het
Ndc80 A T 17: 71,807,276 (GRCm39) V560D probably benign Het
Nscme3l A T 19: 5,553,463 (GRCm39) V106D probably damaging Het
Or1e25 T A 11: 73,494,030 (GRCm39) V208E possibly damaging Het
Or2t48 A C 11: 58,420,710 (GRCm39) V34G probably benign Het
Or56a3 A T 7: 104,735,565 (GRCm39) D214V probably damaging Het
Or6a2 A T 7: 106,600,286 (GRCm39) S260R probably damaging Het
Or9i1b T C 19: 13,896,411 (GRCm39) V9A probably benign Het
Pcdhga4 A T 18: 37,819,651 (GRCm39) Y400F probably damaging Het
Pkd2 A G 5: 104,634,515 (GRCm39) silent Het
Plxna4 T A 6: 32,183,165 (GRCm39) I913F probably damaging Het
Psmc1 T C 12: 100,086,399 (GRCm39) probably null Het
Robo2 G A 16: 73,695,853 (GRCm39) T1430I probably benign Het
Septin14 T C 5: 129,774,926 (GRCm39) H83R probably damaging Het
Slc16a10 A G 10: 39,952,784 (GRCm39) F237L probably benign Het
Slc37a1 A T 17: 31,559,236 (GRCm39) T439S probably damaging Het
Slc6a6 T C 6: 91,712,170 (GRCm39) F233S probably damaging Het
Smyd3 A T 1: 179,238,024 (GRCm39) D114E probably benign Het
Sned1 T C 1: 93,199,324 (GRCm39) I468T probably benign Het
Speer4a1 T A 5: 26,241,736 (GRCm39) N130I probably damaging Het
Tdrd7 T C 4: 46,029,757 (GRCm39) V1030A probably benign Het
Trip12 A T 1: 84,727,065 (GRCm39) D1135E probably damaging Het
Tsga10 T A 1: 37,800,598 (GRCm39) D542V probably damaging Het
Ubqlnl G A 7: 103,798,904 (GRCm39) Q198* probably null Het
Unc93a2 A T 17: 7,637,187 (GRCm39) C334S probably benign Het
Usp46 A T 5: 74,189,902 (GRCm39) M43K probably benign Het
Vmn1r175 A T 7: 23,508,531 (GRCm39) I32N possibly damaging Het
Vmn1r29 C T 6: 58,285,108 (GRCm39) T276I probably benign Het
Vmn1r81 A T 7: 11,994,034 (GRCm39) D191E probably damaging Het
Zbtb5 C A 4: 44,995,052 (GRCm39) V111F probably damaging Het
Zfp12 C T 5: 143,230,240 (GRCm39) P189L possibly damaging Het
Zfp729b A G 13: 67,739,140 (GRCm39) F1042L probably benign Het
Other mutations in Safb2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00825:Safb2 APN 17 56,878,208 (GRCm39) critical splice donor site probably null
IGL00954:Safb2 APN 17 56,885,639 (GRCm39) critical splice donor site probably null
IGL01085:Safb2 APN 17 56,872,242 (GRCm39) nonsense probably null
IGL03073:Safb2 APN 17 56,878,289 (GRCm39) missense probably benign 0.06
R0748:Safb2 UTSW 17 56,882,580 (GRCm39) missense probably benign 0.30
R1297:Safb2 UTSW 17 56,891,265 (GRCm39) unclassified probably benign
R1876:Safb2 UTSW 17 56,883,909 (GRCm39) splice site probably null
R2921:Safb2 UTSW 17 56,875,906 (GRCm39) missense possibly damaging 0.46
R3966:Safb2 UTSW 17 56,882,356 (GRCm39) missense probably null 1.00
R5140:Safb2 UTSW 17 56,884,901 (GRCm39) missense probably benign 0.01
R5484:Safb2 UTSW 17 56,882,346 (GRCm39) intron probably benign
R5602:Safb2 UTSW 17 56,882,630 (GRCm39) missense possibly damaging 0.65
R5801:Safb2 UTSW 17 56,870,103 (GRCm39) missense possibly damaging 0.96
R5864:Safb2 UTSW 17 56,873,491 (GRCm39) unclassified probably benign
R5985:Safb2 UTSW 17 56,870,181 (GRCm39) missense possibly damaging 0.72
R6060:Safb2 UTSW 17 56,870,246 (GRCm39) splice site probably null
R6279:Safb2 UTSW 17 56,870,226 (GRCm39) missense possibly damaging 0.53
R6300:Safb2 UTSW 17 56,870,226 (GRCm39) missense possibly damaging 0.53
R6411:Safb2 UTSW 17 56,878,289 (GRCm39) missense probably benign 0.06
R6555:Safb2 UTSW 17 56,889,982 (GRCm39) critical splice donor site probably null
R6555:Safb2 UTSW 17 56,874,600 (GRCm39) missense probably damaging 1.00
R7039:Safb2 UTSW 17 56,871,594 (GRCm39) missense possibly damaging 0.82
R7515:Safb2 UTSW 17 56,889,982 (GRCm39) critical splice donor site probably null
R7796:Safb2 UTSW 17 56,873,327 (GRCm39) missense possibly damaging 0.53
R8186:Safb2 UTSW 17 56,873,051 (GRCm39) missense possibly damaging 0.91
R8361:Safb2 UTSW 17 56,890,061 (GRCm39) missense probably damaging 0.99
R8918:Safb2 UTSW 17 56,882,975 (GRCm39) nonsense probably null
R8998:Safb2 UTSW 17 56,870,391 (GRCm39) missense possibly damaging 0.53
R9025:Safb2 UTSW 17 56,873,614 (GRCm39) missense probably damaging 0.99
R9176:Safb2 UTSW 17 56,878,292 (GRCm39) utr 3 prime probably benign
R9183:Safb2 UTSW 17 56,878,292 (GRCm39) utr 3 prime probably benign
R9184:Safb2 UTSW 17 56,878,292 (GRCm39) utr 3 prime probably benign
R9213:Safb2 UTSW 17 56,882,602 (GRCm39) missense probably benign 0.01
R9522:Safb2 UTSW 17 56,873,900 (GRCm39) missense probably damaging 1.00
X0066:Safb2 UTSW 17 56,872,978 (GRCm39) missense probably benign 0.29
Z1186:Safb2 UTSW 17 56,870,246 (GRCm39) splice site probably null
Predicted Primers PCR Primer
(F):5'- AAGCAAACTTCTTCACGTCTTC -3'
(R):5'- ACCTATTTGAGAGCTGCGGC -3'

Sequencing Primer
(F):5'- CTATCTTGGGGCTCAGGGC -3'
(R):5'- GCCACCCGGAAGAGGAAG -3'
Posted On 2016-10-24