Incidental Mutation 'R5560:Ipo9'
ID 436489
Institutional Source Beutler Lab
Gene Symbol Ipo9
Ensembl Gene ENSMUSG00000041879
Gene Name importin 9
Synonyms 0710008K06Rik, Imp9
MMRRC Submission 043117-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R5560 (G1)
Quality Score 225
Status Not validated
Chromosome 1
Chromosomal Location 135310050-135358237 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 135329983 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Phenylalanine at position 486 (L486F)
Ref Sequence ENSEMBL: ENSMUSP00000124779 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000041023] [ENSMUST00000161032] [ENSMUST00000161189] [ENSMUST00000161838]
AlphaFold no structure available at present
Predicted Effect possibly damaging
Transcript: ENSMUST00000041023
AA Change: L486F

PolyPhen 2 Score 0.569 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000036093
Gene: ENSMUSG00000041879
AA Change: L486F

DomainStartEndE-ValueType
low complexity region 2 10 N/A INTRINSIC
IBN_N 43 119 3.83e-7 SMART
low complexity region 911 922 N/A INTRINSIC
low complexity region 978 990 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159017
Predicted Effect probably damaging
Transcript: ENSMUST00000161032
AA Change: L486F

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000124779
Gene: ENSMUSG00000041879
AA Change: L486F

DomainStartEndE-ValueType
low complexity region 2 10 N/A INTRINSIC
IBN_N 43 119 3.83e-7 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000161135
Predicted Effect probably benign
Transcript: ENSMUST00000161189
SMART Domains Protein: ENSMUSP00000124492
Gene: ENSMUSG00000041879

DomainStartEndE-ValueType
low complexity region 2 10 N/A INTRINSIC
SCOP:d1i6la_ 21 52 4e-3 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000161258
Predicted Effect noncoding transcript
Transcript: ENSMUST00000161704
Predicted Effect probably benign
Transcript: ENSMUST00000161838
SMART Domains Protein: ENSMUSP00000125646
Gene: ENSMUSG00000041879

DomainStartEndE-ValueType
low complexity region 2 10 N/A INTRINSIC
SCOP:d1i6la_ 21 52 4e-3 SMART
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 97.7%
  • 20x: 92.8%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a transgenic gene disruption exhibit embryonic lethality at E7. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 81 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acyp2 C T 11: 30,456,354 (GRCm39) E98K possibly damaging Het
Adipor1 T C 1: 134,353,778 (GRCm39) W188R possibly damaging Het
Agrn T C 4: 156,262,954 (GRCm39) D441G probably damaging Het
Ankrd55 T C 13: 112,520,024 (GRCm39) S570P probably benign Het
Ano9 C G 7: 140,690,395 (GRCm39) G80R probably damaging Het
Arhgef2 T A 3: 88,541,744 (GRCm39) V250E probably damaging Het
Atp2b2 T C 6: 113,751,319 (GRCm39) D583G possibly damaging Het
Bcar3 T A 3: 122,220,224 (GRCm39) D40E possibly damaging Het
Capn12 A G 7: 28,582,285 (GRCm39) D133G probably benign Het
Ccna1 A T 3: 54,955,990 (GRCm39) Y269N probably damaging Het
Cct6b A T 11: 82,632,239 (GRCm39) Y250N probably damaging Het
Cep112 A C 11: 108,328,061 (GRCm39) K98Q probably damaging Het
Chst13 T C 6: 90,295,251 (GRCm39) D54G probably damaging Het
Clstn2 G T 9: 97,351,872 (GRCm39) H518N possibly damaging Het
Cntnap1 T A 11: 101,073,261 (GRCm39) L581M probably damaging Het
Cog3 T A 14: 75,966,833 (GRCm39) M446L probably damaging Het
Dennd2c T A 3: 103,068,871 (GRCm39) I756K probably damaging Het
Dennd3 T G 15: 73,404,744 (GRCm39) L273R probably damaging Het
Dhx34 C A 7: 15,952,466 (GRCm39) R53L probably benign Het
Dnah9 G A 11: 65,772,566 (GRCm39) T3722I probably benign Het
Dnajb12 GC G 10: 59,728,574 (GRCm39) probably null Het
Dusp6 A G 10: 99,102,103 (GRCm39) Y217C probably damaging Het
Dync2i1 T C 12: 116,181,733 (GRCm39) S769G probably damaging Het
Dyrk1b G A 7: 27,883,678 (GRCm39) R178Q possibly damaging Het
Eif4g1 T A 16: 20,505,645 (GRCm39) C1009S probably benign Het
Frmpd1 A T 4: 45,243,697 (GRCm39) T57S probably damaging Het
Gask1a T C 9: 121,807,289 (GRCm39) F478L possibly damaging Het
Gjc2 A G 11: 59,068,185 (GRCm39) V99A possibly damaging Het
Gm9955 A T 18: 24,842,149 (GRCm39) probably benign Het
Gpr158 A G 2: 21,831,101 (GRCm39) I734V possibly damaging Het
H1f2 A G 13: 23,923,390 (GRCm39) S187G probably benign Het
Herc1 A T 9: 66,358,401 (GRCm39) H2494L probably benign Het
Hjurp GT GTT 1: 88,194,246 (GRCm39) probably null Het
Hmgcs1 A G 13: 120,161,351 (GRCm39) probably null Het
Invs A T 4: 48,416,084 (GRCm39) T655S probably benign Het
Katnip T C 7: 125,453,733 (GRCm39) V1150A probably benign Het
Kcnj6 A T 16: 94,633,824 (GRCm39) L96M probably benign Het
Lfng A G 5: 140,600,022 (GRCm39) D354G possibly damaging Het
Lgsn T C 1: 31,235,953 (GRCm39) L139P probably damaging Het
Madd C A 2: 90,993,890 (GRCm39) V923L probably damaging Het
Mical1 A T 10: 41,354,961 (GRCm39) I157F probably damaging Het
Mis18bp1 T C 12: 65,199,590 (GRCm39) N154S possibly damaging Het
Mrps14 A G 1: 160,023,105 (GRCm39) K6R probably benign Het
Mug1 T A 6: 121,838,032 (GRCm39) C421S probably damaging Het
Myo18b A G 5: 113,016,161 (GRCm39) I696T probably damaging Het
Naf1 T C 8: 67,336,197 (GRCm39) Y375H probably damaging Het
Nsf T A 11: 103,754,081 (GRCm39) E485V possibly damaging Het
Nup188 A G 2: 30,199,897 (GRCm39) D307G probably damaging Het
Ocel1 C A 8: 71,825,122 (GRCm39) P108T probably damaging Het
Oip5 A G 2: 119,443,540 (GRCm39) S177P probably damaging Het
Omg A G 11: 79,392,584 (GRCm39) W425R possibly damaging Het
Or1ad8 A C 11: 50,898,350 (GRCm39) I184L possibly damaging Het
Or1l4 A G 2: 37,091,942 (GRCm39) I230V probably benign Het
Or5an10 G A 19: 12,276,008 (GRCm39) Q163* probably null Het
Or8g26 A C 9: 39,095,480 (GRCm39) E2A probably benign Het
Pikfyve A G 1: 65,292,566 (GRCm39) Y1339C probably damaging Het
Polr3e A G 7: 120,522,172 (GRCm39) D6G possibly damaging Het
Pou4f3 C A 18: 42,528,480 (GRCm39) P141Q probably benign Het
Rcsd1 T A 1: 165,483,070 (GRCm39) N337I possibly damaging Het
Rhoj C T 12: 75,438,486 (GRCm39) P91S probably damaging Het
Rnf10 A G 5: 115,388,057 (GRCm39) F367S probably damaging Het
Rnft1 A T 11: 86,384,022 (GRCm39) R307S probably benign Het
Ryr3 A T 2: 112,585,222 (GRCm39) F2788Y probably damaging Het
Scgb1c1 A G 7: 140,426,137 (GRCm39) K78E possibly damaging Het
Scn5a G T 9: 119,389,352 (GRCm39) A123E probably damaging Het
Setd2 T A 9: 110,378,907 (GRCm39) Y623* probably null Het
Slc49a3 A T 5: 108,596,729 (GRCm39) M1K probably null Het
Spmap2l A G 5: 77,164,333 (GRCm39) D112G possibly damaging Het
Tbl2 C T 5: 135,186,445 (GRCm39) Q216* probably null Het
Tnc A G 4: 63,926,946 (GRCm39) I860T probably damaging Het
Trafd1 T C 5: 121,511,366 (GRCm39) K484R possibly damaging Het
Trank1 T C 9: 111,219,635 (GRCm39) V2124A probably damaging Het
Trpm4 A T 7: 44,959,756 (GRCm39) W713R probably damaging Het
Uap1l1 T C 2: 25,252,688 (GRCm39) T451A probably benign Het
Uba6 A T 5: 86,279,119 (GRCm39) C668S probably damaging Het
Ubxn11 T C 4: 133,853,935 (GRCm39) F441S probably damaging Het
Vmn1r22 C T 6: 57,877,723 (GRCm39) V85M probably damaging Het
Vmn2r72 T A 7: 85,401,150 (GRCm39) I90L probably damaging Het
Zfp330 T C 8: 83,491,585 (GRCm39) E196G probably benign Het
Zfp746 A G 6: 48,059,108 (GRCm39) V167A possibly damaging Het
Zfp994 T C 17: 22,420,694 (GRCm39) E85G possibly damaging Het
Other mutations in Ipo9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00896:Ipo9 APN 1 135,327,797 (GRCm39) missense probably damaging 1.00
IGL01611:Ipo9 APN 1 135,314,431 (GRCm39) missense possibly damaging 0.76
IGL01941:Ipo9 APN 1 135,335,811 (GRCm39) missense possibly damaging 0.95
IGL01944:Ipo9 APN 1 135,333,624 (GRCm39) missense probably damaging 0.98
IGL01959:Ipo9 APN 1 135,348,093 (GRCm39) critical splice acceptor site probably null
IGL02649:Ipo9 APN 1 135,313,672 (GRCm39) missense possibly damaging 0.92
IGL02697:Ipo9 APN 1 135,318,314 (GRCm39) missense probably benign 0.00
IGL03286:Ipo9 APN 1 135,334,816 (GRCm39) intron probably benign
FR4304:Ipo9 UTSW 1 135,314,017 (GRCm39) nonsense probably null
FR4304:Ipo9 UTSW 1 135,314,013 (GRCm39) small insertion probably benign
FR4340:Ipo9 UTSW 1 135,314,009 (GRCm39) small insertion probably benign
FR4340:Ipo9 UTSW 1 135,314,007 (GRCm39) small insertion probably benign
FR4548:Ipo9 UTSW 1 135,314,013 (GRCm39) small insertion probably benign
FR4589:Ipo9 UTSW 1 135,314,004 (GRCm39) small insertion probably benign
FR4589:Ipo9 UTSW 1 135,314,019 (GRCm39) small insertion probably benign
FR4976:Ipo9 UTSW 1 135,314,019 (GRCm39) small insertion probably benign
R0111:Ipo9 UTSW 1 135,333,662 (GRCm39) missense probably damaging 0.97
R0238:Ipo9 UTSW 1 135,332,074 (GRCm39) splice site probably benign
R0239:Ipo9 UTSW 1 135,332,074 (GRCm39) splice site probably benign
R0279:Ipo9 UTSW 1 135,348,101 (GRCm39) intron probably benign
R0704:Ipo9 UTSW 1 135,314,006 (GRCm39) small deletion probably benign
R1070:Ipo9 UTSW 1 135,334,281 (GRCm39) missense possibly damaging 0.89
R1282:Ipo9 UTSW 1 135,330,030 (GRCm39) missense possibly damaging 0.48
R1467:Ipo9 UTSW 1 135,334,281 (GRCm39) missense possibly damaging 0.89
R1467:Ipo9 UTSW 1 135,334,281 (GRCm39) missense possibly damaging 0.89
R1728:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1728:Ipo9 UTSW 1 135,314,009 (GRCm39) small insertion probably benign
R1728:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1729:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1729:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1730:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1730:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1739:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1739:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1762:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1762:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1783:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1783:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1784:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1784:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1785:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R1785:Ipo9 UTSW 1 135,314,019 (GRCm39) small insertion probably benign
R1785:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R1899:Ipo9 UTSW 1 135,327,884 (GRCm39) missense probably damaging 0.99
R2049:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2049:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2130:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2130:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2131:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2131:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2133:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2133:Ipo9 UTSW 1 135,314,013 (GRCm39) small insertion probably benign
R2133:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2136:Ipo9 UTSW 1 135,322,023 (GRCm39) missense probably damaging 0.98
R2141:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2141:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2142:Ipo9 UTSW 1 135,314,020 (GRCm39) small insertion probably benign
R2142:Ipo9 UTSW 1 135,329,988 (GRCm39) missense probably benign
R2142:Ipo9 UTSW 1 135,314,006 (GRCm39) small insertion probably benign
R2142:Ipo9 UTSW 1 135,314,013 (GRCm39) small insertion probably benign
R2356:Ipo9 UTSW 1 135,334,555 (GRCm39) missense probably benign 0.00
R2923:Ipo9 UTSW 1 135,327,867 (GRCm39) missense probably benign 0.25
R3161:Ipo9 UTSW 1 135,337,214 (GRCm39) missense probably benign 0.43
R3162:Ipo9 UTSW 1 135,337,214 (GRCm39) missense probably benign 0.43
R3162:Ipo9 UTSW 1 135,337,214 (GRCm39) missense probably benign 0.43
R4086:Ipo9 UTSW 1 135,316,428 (GRCm39) unclassified probably benign
R4679:Ipo9 UTSW 1 135,321,907 (GRCm39) missense probably benign
R4816:Ipo9 UTSW 1 135,334,288 (GRCm39) missense probably benign 0.21
R4956:Ipo9 UTSW 1 135,331,960 (GRCm39) critical splice donor site probably null
R5052:Ipo9 UTSW 1 135,316,349 (GRCm39) splice site probably null
R5055:Ipo9 UTSW 1 135,330,097 (GRCm39) nonsense probably null
R5230:Ipo9 UTSW 1 135,347,808 (GRCm39) missense probably damaging 1.00
R5240:Ipo9 UTSW 1 135,317,344 (GRCm39) unclassified probably benign
R5257:Ipo9 UTSW 1 135,313,173 (GRCm39) missense probably damaging 1.00
R5340:Ipo9 UTSW 1 135,313,170 (GRCm39) missense probably benign 0.00
R5602:Ipo9 UTSW 1 135,329,983 (GRCm39) missense probably damaging 0.99
R5604:Ipo9 UTSW 1 135,329,983 (GRCm39) missense probably damaging 0.99
R5654:Ipo9 UTSW 1 135,313,210 (GRCm39) nonsense probably null
R6018:Ipo9 UTSW 1 135,318,274 (GRCm39) critical splice donor site probably null
R6128:Ipo9 UTSW 1 135,318,311 (GRCm39) missense possibly damaging 0.90
R6841:Ipo9 UTSW 1 135,314,046 (GRCm39) missense probably benign
R7230:Ipo9 UTSW 1 135,334,496 (GRCm39) critical splice donor site probably benign
R7255:Ipo9 UTSW 1 135,313,726 (GRCm39) missense probably benign 0.01
R7383:Ipo9 UTSW 1 135,316,411 (GRCm39) missense probably damaging 1.00
R7844:Ipo9 UTSW 1 135,322,062 (GRCm39) missense probably benign 0.00
R7889:Ipo9 UTSW 1 135,334,591 (GRCm39) missense probably benign 0.22
R8125:Ipo9 UTSW 1 135,331,078 (GRCm39) missense probably benign 0.00
R8823:Ipo9 UTSW 1 135,347,077 (GRCm39) missense probably damaging 0.99
R8889:Ipo9 UTSW 1 135,314,544 (GRCm39) missense possibly damaging 0.50
R8892:Ipo9 UTSW 1 135,314,544 (GRCm39) missense possibly damaging 0.50
R8906:Ipo9 UTSW 1 135,321,951 (GRCm39) missense probably damaging 1.00
R8926:Ipo9 UTSW 1 135,313,952 (GRCm39) splice site probably benign
R9084:Ipo9 UTSW 1 135,334,563 (GRCm39) missense probably benign 0.01
R9215:Ipo9 UTSW 1 135,347,033 (GRCm39) missense probably benign 0.05
R9756:Ipo9 UTSW 1 135,314,057 (GRCm39) missense probably benign 0.00
Y5405:Ipo9 UTSW 1 135,314,022 (GRCm39) small insertion probably benign
Y5405:Ipo9 UTSW 1 135,314,013 (GRCm39) small insertion probably benign
Y5405:Ipo9 UTSW 1 135,314,007 (GRCm39) small insertion probably benign
Predicted Primers PCR Primer
(F):5'- CTCAAAGGACTAGGCAGGGGTA -3'
(R):5'- GAAATACTGACAAATGATTTGGGATC -3'

Sequencing Primer
(F):5'- CTAGGCAGGGGTAATATAGGATAC -3'
(R):5'- ACTTTGGAATACTCTGAGGGATC -3'
Posted On 2016-10-24