Mutagenetix > Incidental Mutation

Incidental Mutation 'R5561:Spats2l'

436568

Institutional Source

Beutler Lab

Gene Symbol

Spats2l

Ensembl Gene

ENSMUSG00000038305

Gene Name

spermatogenesis associated, serine-rich 2-like

Synonyms

A230104H11Rik, 2810022L02Rik

MMRRC Submission

043118-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.135) question?

Stock #

R5561 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

57774162-57948394 bp(+) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

T to A at 57900621 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000126166 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000163239] [ENSMUST00000163239] [ENSMUST00000164302] [ENSMUST00000167085] [ENSMUST00000167085] [ENSMUST00000169772] [ENSMUST00000169772] [ENSMUST00000170139] [ENSMUST00000170139] [ENSMUST00000171699] [ENSMUST00000172068] [ENSMUST00000172068]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000163239

SMART Domains

Protein: ENSMUSP00000128992
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	1	261	9.7e-124	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000163239

SMART Domains

Protein: ENSMUSP00000128992
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	1	261	9.7e-124	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000164302

SMART Domains

Protein: ENSMUSP00000132592
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	59	149	3.6e-25	PFAM
Pfam:DUF1387	146	299	1.6e-93	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000164353

Predicted Effect

probably null
Transcript: ENSMUST00000167085

SMART Domains

Protein: ENSMUSP00000133054
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	79	388	1.8e-130	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000167085

SMART Domains

Protein: ENSMUSP00000133054
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	79	388	1.8e-130	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000169772

SMART Domains

Protein: ENSMUSP00000132975
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	59	368	5.6e-139	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000169772

SMART Domains

Protein: ENSMUSP00000132975
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	59	368	5.6e-139	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000170139

SMART Domains

Protein: ENSMUSP00000127598
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	59	368	5.6e-139	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000170139

SMART Domains

Protein: ENSMUSP00000127598
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	59	368	5.6e-139	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000171699

SMART Domains

Protein: ENSMUSP00000128239
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	79	169	1.2e-25	PFAM
Pfam:DUF1387	167	270	2e-60	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000172068

SMART Domains

Protein: ENSMUSP00000126166
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	79	244	5e-43	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000172068

SMART Domains

Protein: ENSMUSP00000126166
Gene: ENSMUSG00000038305

Domain	Start	End	E-Value	Type
Pfam:DUF1387	79	244	5e-43	PFAM

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.9%
20x: 93.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921530L21Rik	C	A	14: 95,882,371	A188E	probably benign	Het
A630095N17Rik	T	C	1: 75,220,537		probably benign	Het
Acyp2	C	T	11: 30,506,354	E98K	possibly damaging	Het
Adgrv1	A	G	13: 81,476,564	L3762P	probably damaging	Het
Amn1	G	A	6: 149,185,024	R4W	probably damaging	Het
Atxn1	G	T	13: 45,566,871	T516N	possibly damaging	Het
Atxn7	A	T	14: 14,089,260	T259S	probably benign	Het
Bsn	C	G	9: 108,105,511	R3681P	unknown	Het
C8b	T	C	4: 104,784,448	Y194H	possibly damaging	Het
Ccdc110	T	G	8: 45,940,609	S119R	probably benign	Het
Ceacam20	A	T	7: 19,970,393	Q123L	possibly damaging	Het
Clip3	A	G	7: 30,298,849	D240G	possibly damaging	Het
Col24a1	T	C	3: 145,298,827	F22S	probably benign	Het
Dlg5	T	A	14: 24,177,792	M354L	probably benign	Het
Dnajb12	GC	G	10: 59,892,752		probably null	Het
Dnase1l3	A	G	14: 7,967,847	V282A	probably damaging	Het
Dnhd1	G	A	7: 105,714,821	G4127S	probably damaging	Het
Eed	G	A	7: 89,967,793	R165W	probably damaging	Het
Ephb2	C	T	4: 136,661,406	V627M	probably damaging	Het
Fancc	T	C	13: 63,317,387	E502G	possibly damaging	Het
Fbf1	T	C	11: 116,157,820	D105G	probably damaging	Het
Fer	T	A	17: 64,037,585	Y246*	probably null	Het
Fer1l6	A	G	15: 58,660,825	K1792E	probably damaging	Het
Foxi2	A	G	7: 135,411,647	D202G	probably damaging	Het
Gm11595	G	A	11: 99,772,555	R100C	unknown	Het
H2-DMb2	G	T	17: 34,145,471		probably null	Het
Helq	G	T	5: 100,787,050	D491E	probably benign	Het
Hgsnat	A	G	8: 25,946,334	V564A	possibly damaging	Het
Hjurp	GT	GTT	1: 88,266,524		probably null	Het
Hs3st5	T	A	10: 36,833,429	V320D	probably damaging	Het
Ifit1bl1	A	T	19: 34,593,797	L420*	probably null	Het
Ift80	T	G	3: 68,967,863	N178T	probably benign	Het
Ing4	C	T	6: 125,047,060	T89I	possibly damaging	Het
Lcp1	G	A	14: 75,212,508	D386N	probably benign	Het
Mdc1	T	A	17: 35,848,546	I606K	probably benign	Het
Mllt10	T	A	2: 18,109,845	M120K	probably damaging	Het
Morc1	G	T	16: 48,449,348	L89F	probably benign	Het
Mroh2a	GCCC	GC	1: 88,232,257		probably null	Het
Nav3	C	A	10: 109,716,552	D1810Y	probably damaging	Het
Obscn	G	A	11: 59,036,093	T5532M	probably damaging	Het
Olfr527	C	T	7: 140,336,152	Q97*	probably null	Het
Olfr716	A	G	7: 107,148,090	N258S	probably benign	Het
Opn3	C	T	1: 175,665,587	R137H	probably damaging	Het
Palld	G	A	8: 61,516,585	A993V	probably damaging	Het
Ppp1r12c	A	T	7: 4,486,356		probably null	Het
Prdm4	TCTCCTCCT	TCTCCT	10: 85,893,123		probably null	Het
Rapgef2	A	T	3: 79,088,643		probably null	Het
Ring1	T	C	17: 34,021,458	E382G	possibly damaging	Het
Rpl22l1	T	A	3: 28,806,820	N61K	probably benign	Het
Rpp14	A	G	14: 8,090,558		probably null	Het
Rusc2	C	T	4: 43,415,932	Q413*	probably null	Het
Slco3a1	A	G	7: 74,318,499	I491T	possibly damaging	Het
Smtnl1	C	T	2: 84,818,395	V172I	probably benign	Het
Spire1	T	A	18: 67,506,646	N266Y	probably damaging	Het
Stox2	T	C	8: 47,193,006	H473R	probably damaging	Het
Syne2	C	T	12: 76,094,458	R121*	probably null	Het
Synrg	G	A	11: 84,002,240		probably null	Het
Tm9sf1	C	T	14: 55,638,097	V397M	probably damaging	Het
Trabd	T	C	15: 89,081,984	M48T	probably benign	Het
Ttn	T	A	2: 76,707,233	I26457F	possibly damaging	Het
Uggt2	C	T	14: 119,041,527	R856Q	probably benign	Het
Ugt1a5	T	A	1: 88,166,317	M89K	probably benign	Het
Vmn2r53	A	T	7: 12,601,420	S104R	probably damaging	Het
Zdhhc12	A	T	2: 30,092,484	L53Q	probably null	Het

Other mutations in Spats2l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00771:Spats2l	APN	1	57943072	missense	probably damaging	1.00
IGL00788:Spats2l	APN	1	57885705	missense	probably damaging	1.00
IGL01627:Spats2l	APN	1	57902082	splice site	probably benign
IGL01758:Spats2l	APN	1	57879556	missense	probably damaging	1.00
IGL03395:Spats2l	APN	1	57938016	missense	probably damaging	1.00
P0033:Spats2l	UTSW	1	57885838	missense	probably damaging	0.99
R0762:Spats2l	UTSW	1	57885884	missense	possibly damaging	0.88
R1167:Spats2l	UTSW	1	57943111	missense	probably damaging	1.00
R1486:Spats2l	UTSW	1	57900811	missense	probably damaging	0.99
R1564:Spats2l	UTSW	1	57946224	missense	probably damaging	1.00
R1938:Spats2l	UTSW	1	57885782	missense	probably benign	0.32
R2071:Spats2l	UTSW	1	57940464	missense	possibly damaging	0.90
R2096:Spats2l	UTSW	1	57946299	missense	probably benign	0.00
R2215:Spats2l	UTSW	1	57946416	missense	possibly damaging	0.82
R3053:Spats2l	UTSW	1	57900766	missense	probably damaging	1.00
R3784:Spats2l	UTSW	1	57885779	missense	probably damaging	0.99
R4814:Spats2l	UTSW	1	57937926	missense	possibly damaging	0.83
R4915:Spats2l	UTSW	1	57902188	missense	probably damaging	1.00
R4962:Spats2l	UTSW	1	57885824	missense	possibly damaging	0.88
R5022:Spats2l	UTSW	1	57879556	missense	probably damaging	1.00
R5068:Spats2l	UTSW	1	57943221	missense	probably benign
R5773:Spats2l	UTSW	1	57879549	missense	possibly damaging	0.86
R5885:Spats2l	UTSW	1	57946162	missense	probably damaging	0.96
R6136:Spats2l	UTSW	1	57902143	missense	probably damaging	1.00
R6651:Spats2l	UTSW	1	57946177	missense	probably damaging	1.00
R6929:Spats2l	UTSW	1	57879536	missense	probably damaging	1.00
R7030:Spats2l	UTSW	1	57879530	missense	probably damaging	1.00
R7176:Spats2l	UTSW	1	57937918	missense	possibly damaging	0.89
R7274:Spats2l	UTSW	1	57879513	nonsense	probably null
R7342:Spats2l	UTSW	1	57885947	missense	possibly damaging	0.91
R7387:Spats2l	UTSW	1	57902134	missense	probably damaging	1.00
R7459:Spats2l	UTSW	1	57799353	splice site	probably benign
R9239:Spats2l	UTSW	1	57832098	start gained	probably benign
X0054:Spats2l	UTSW	1	57943243	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- CGCTTGCAAGTTGTTACTAACATTG -3'
(R):5'- GGGGCATTGGACTTAACAGG -3'

Sequencing Primer
(F):5'- ATATCTCTCTGCAGGCAGTTG -3'
(R):5'- ACAGGAGATGTTTTTGCCTTAGGC -3'

Posted On

2016-10-24