Incidental Mutation 'R5566:Itsn2'
ID 436852
Institutional Source Beutler Lab
Gene Symbol Itsn2
Ensembl Gene ENSMUSG00000020640
Gene Name intersectin 2
Synonyms Sh3d1B, Eh domain, SH3 domain regulator of endocytosis 2, Ese2, Sh3p18
MMRRC Submission 043123-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R5566 (G1)
Quality Score 225
Status Not validated
Chromosome 12
Chromosomal Location 4592638-4713962 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to A at 4626554 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Leucine to Glutamine at position 50 (L50Q)
Ref Sequence ENSEMBL: ENSMUSP00000151663 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000062580] [ENSMUST00000218402] [ENSMUST00000219007] [ENSMUST00000220311]
AlphaFold no structure available at present
Predicted Effect unknown
Transcript: ENSMUST00000062580
AA Change: L50Q
SMART Domains Protein: ENSMUSP00000052758
Gene: ENSMUSG00000020640
AA Change: L50Q

DomainStartEndE-ValueType
EH 15 109 8.44e-41 SMART
EFh 58 86 7.18e-3 SMART
low complexity region 156 169 N/A INTRINSIC
low complexity region 215 231 N/A INTRINSIC
EH 238 333 4.06e-43 SMART
EFh 282 310 6.16e-2 SMART
coiled coil region 366 462 N/A INTRINSIC
coiled coil region 516 556 N/A INTRINSIC
coiled coil region 580 715 N/A INTRINSIC
SH3 721 778 2.65e-21 SMART
low complexity region 791 811 N/A INTRINSIC
SH3 855 909 8.83e-18 SMART
SH3 945 999 9.1e-20 SMART
SH3 1017 1077 1.55e-13 SMART
SH3 1091 1146 7.22e-23 SMART
RhoGEF 1174 1355 1.93e-56 SMART
PH 1396 1507 1.16e-9 SMART
C2 1531 1628 3.96e-19 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000217882
Predicted Effect noncoding transcript
Transcript: ENSMUST00000217942
Predicted Effect noncoding transcript
Transcript: ENSMUST00000217981
Predicted Effect noncoding transcript
Transcript: ENSMUST00000218072
Predicted Effect probably damaging
Transcript: ENSMUST00000218402
AA Change: L50Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
Predicted Effect unknown
Transcript: ENSMUST00000219007
AA Change: L50Q
Predicted Effect noncoding transcript
Transcript: ENSMUST00000219832
Predicted Effect unknown
Transcript: ENSMUST00000220311
AA Change: L50Q
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.4%
  • 20x: 95.5%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a cytoplasmic protein which contains SH3 domains. This protein is a member of a family of proteins involved in clathrin-mediated endocytosis. Intersectin 2 is thought to regulate the formation of clathrin-coated vesicles and also may function in the induction of T cell antigen receptor (TCR) endocytosis. [provided by RefSeq, Jan 2017]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit normal brain morphology and function and behavior. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 97 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
3110002H16Rik T C 18: 12,180,692 (GRCm38) I26T possibly damaging Het
Abca13 T A 11: 9,294,615 (GRCm38) Y2159* probably null Het
Abca3 A G 17: 24,383,927 (GRCm38) T499A probably benign Het
Abcb5 T A 12: 118,935,967 (GRCm38) T322S probably damaging Het
Adamts4 T A 1: 171,250,850 (GRCm38) M1K probably null Het
Adamtsl4 C T 3: 95,685,455 (GRCm38) probably null Het
Adh4 A T 3: 138,424,189 (GRCm38) I259F probably damaging Het
Aff3 G A 1: 38,181,424 (GRCm38) S1135F probably damaging Het
Arhgef16 T C 4: 154,285,648 (GRCm38) D280G probably benign Het
Baiap3 T C 17: 25,251,733 (GRCm38) E71G probably damaging Het
BC030867 T A 11: 102,255,833 (GRCm38) S312T probably damaging Het
Calb2 A G 8: 110,152,700 (GRCm38) I91T possibly damaging Het
Ccr5 A G 9: 124,124,660 (GRCm38) N100S probably benign Het
Cep57 G T 9: 13,821,575 (GRCm38) R25S probably damaging Het
Chadl A G 15: 81,695,878 (GRCm38) L52P probably damaging Het
Clec12b T C 6: 129,385,475 (GRCm38) T6A probably damaging Het
Cnga1 T A 5: 72,618,250 (GRCm38) N43Y probably damaging Het
Col20a1 A T 2: 180,986,523 (GRCm38) probably null Het
Csmd2 T C 4: 128,462,889 (GRCm38) probably null Het
Ctps A T 4: 120,554,103 (GRCm38) probably null Het
Cyp39a1 T A 17: 43,685,208 (GRCm38) W224R possibly damaging Het
Defb29 A T 2: 152,538,928 (GRCm38) Y54N probably benign Het
Dmbt1 A T 7: 131,106,273 (GRCm38) D1241V probably damaging Het
Dnah1 A T 14: 31,274,366 (GRCm38) I2671K probably benign Het
Dnah2 C A 11: 69,516,569 (GRCm38) E158* probably null Het
Edar A G 10: 58,628,641 (GRCm38) S59P possibly damaging Het
Egr2 T A 10: 67,540,766 (GRCm38) C339* probably null Het
Eif5b G A 1: 38,051,247 (GRCm38) G1169E probably damaging Het
Eif5b G A 1: 38,045,684 (GRCm38) V871I possibly damaging Het
Erap1 A G 13: 74,662,412 (GRCm38) Y290C probably damaging Het
Fastkd5 T A 2: 130,614,301 (GRCm38) T790S possibly damaging Het
Fkrp C T 7: 16,810,924 (GRCm38) V338M probably damaging Het
Gabra6 T C 11: 42,307,490 (GRCm38) T378A probably benign Het
Gm4924 C A 10: 82,378,641 (GRCm38) Q17K possibly damaging Het
Gm9847 A G 12: 14,494,999 (GRCm38) noncoding transcript Het
Gpr108 A G 17: 57,236,919 (GRCm38) F429S probably damaging Het
Gpr162 G A 6: 124,860,938 (GRCm38) R250* probably null Het
Gtf2a1 A T 12: 91,567,594 (GRCm38) D295E possibly damaging Het
Gtf2h3 C T 5: 124,584,297 (GRCm38) T121I probably benign Het
Herc1 T A 9: 66,465,537 (GRCm38) M3125K possibly damaging Het
Hoxb6 T A 11: 96,300,754 (GRCm38) Y167* probably null Het
Htt T C 5: 34,849,075 (GRCm38) Y1443H probably damaging Het
Il21r A G 7: 125,625,298 (GRCm38) D28G probably damaging Het
Impact T G 18: 12,974,762 (GRCm38) V29G probably damaging Het
Itpr3 A G 17: 27,115,952 (GRCm38) T2147A possibly damaging Het
Jade1 A G 3: 41,604,903 (GRCm38) D473G possibly damaging Het
Kif26a T G 12: 112,157,354 (GRCm38) L131R probably damaging Het
Kif2a A T 13: 106,993,924 (GRCm38) M1K probably null Het
Lrsam1 C A 2: 32,941,858 (GRCm38) Q368H probably damaging Het
Macf1 T C 4: 123,435,164 (GRCm38) Q4592R probably damaging Het
Map3k5 T C 10: 20,110,719 (GRCm38) V893A probably damaging Het
Med13l G T 5: 118,728,665 (GRCm38) V595F possibly damaging Het
Mocs1 T A 17: 49,454,183 (GRCm38) L435Q possibly damaging Het
Mtmr4 T C 11: 87,604,530 (GRCm38) L471P probably damaging Het
Myo7a T C 7: 98,064,816 (GRCm38) E1616G possibly damaging Het
Nacad T A 11: 6,602,136 (GRCm38) S352C probably damaging Het
Nfat5 T A 8: 107,369,135 (GRCm38) M817K possibly damaging Het
Ofcc1 C A 13: 40,094,653 (GRCm38) L668F probably damaging Het
Olfr1062 G A 2: 86,423,377 (GRCm38) Q100* probably null Het
Olfr18 T C 9: 20,313,969 (GRCm38) Q309R probably benign Het
Olfr527 C A 7: 140,336,067 (GRCm38) D68E probably damaging Het
Plxnb2 T C 15: 89,164,020 (GRCm38) T696A probably benign Het
Prkab2 T A 3: 97,662,293 (GRCm38) F58L probably benign Het
Prpf4 G T 4: 62,415,969 (GRCm38) L220F probably benign Het
Rad18 A T 6: 112,681,346 (GRCm38) D199E probably benign Het
Raet1e T C 10: 22,174,405 (GRCm38) L29P probably damaging Het
Ralgapb A C 2: 158,494,710 (GRCm38) T1089P possibly damaging Het
Rest A G 5: 77,282,326 (GRCm38) E864G probably benign Het
Rgsl1 T A 1: 153,793,774 (GRCm38) I289F probably damaging Het
Rint1 T C 5: 23,810,953 (GRCm38) Y406H probably damaging Het
Rpl31 C T 1: 39,370,027 (GRCm38) R41C probably benign Het
Scn8a T C 15: 100,974,534 (GRCm38) S485P probably damaging Het
Slamf1 T A 1: 171,787,970 (GRCm38) V249E possibly damaging Het
Slc39a12 C T 2: 14,407,603 (GRCm38) T362I possibly damaging Het
Sos1 C T 17: 80,453,890 (GRCm38) V126I possibly damaging Het
Srcap T C 7: 127,525,303 (GRCm38) F215S probably damaging Het
Supt4a T A 11: 87,743,287 (GRCm38) S110T probably benign Het
Tbc1d30 T A 10: 121,302,110 (GRCm38) T232S probably damaging Het
Tctex1d2 A G 16: 32,419,900 (GRCm38) Y31C probably damaging Het
Tenm3 A G 8: 48,279,006 (GRCm38) C1288R probably damaging Het
Tespa1 T A 10: 130,355,487 (GRCm38) L100* probably null Het
Tgm1 C A 14: 55,712,436 (GRCm38) R105L probably damaging Het
Tgoln1 G A 6: 72,616,035 (GRCm38) T154I possibly damaging Het
Trp53i13 G A 11: 77,508,726 (GRCm38) T259I probably damaging Het
Tubgcp4 T A 2: 121,184,770 (GRCm38) F320I possibly damaging Het
Vmn1r21 A C 6: 57,844,094 (GRCm38) Y122D probably benign Het
Vmn1r75 T A 7: 11,880,480 (GRCm38) D46E probably damaging Het
Vmn2r120 A T 17: 57,545,290 (GRCm38) L9M possibly damaging Het
Vmn2r59 A G 7: 42,046,823 (GRCm38) I165T possibly damaging Het
Vmn2r76 A T 7: 86,226,078 (GRCm38) Y564N probably damaging Het
Wee1 G T 7: 110,126,050 (GRCm38) E300* probably null Het
Xdh T C 17: 73,893,622 (GRCm38) D1168G probably damaging Het
Zcchc6 A T 13: 59,788,629 (GRCm38) C817* probably null Het
Zfp54 A G 17: 21,433,444 (GRCm38) T67A probably damaging Het
Zfp941 G T 7: 140,812,766 (GRCm38) H227N probably benign Het
Zpr1 T A 9: 46,281,075 (GRCm38) V399D possibly damaging Het
Zzz3 A G 3: 152,455,824 (GRCm38) E285G probably damaging Het
Other mutations in Itsn2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00341:Itsn2 APN 12 4,658,027 (GRCm38) missense possibly damaging 0.95
IGL00647:Itsn2 APN 12 4,613,311 (GRCm38) splice site probably benign
IGL00933:Itsn2 APN 12 4,707,540 (GRCm38) missense probably damaging 1.00
IGL01686:Itsn2 APN 12 4,636,693 (GRCm38) splice site probably benign
IGL01873:Itsn2 APN 12 4,632,366 (GRCm38) splice site probably benign
IGL02200:Itsn2 APN 12 4,636,632 (GRCm38) missense probably damaging 0.98
IGL02280:Itsn2 APN 12 4,708,961 (GRCm38) missense possibly damaging 0.89
IGL02388:Itsn2 APN 12 4,629,557 (GRCm38) missense possibly damaging 0.91
IGL02938:Itsn2 APN 12 4,697,216 (GRCm38) missense probably damaging 0.98
Gopher UTSW 12 4,706,983 (GRCm38) nonsense probably null
inversus UTSW 12 4,639,670 (GRCm38) nonsense probably null
Liberator UTSW 12 4,666,176 (GRCm38) nonsense probably null
rolled UTSW 12 4,634,792 (GRCm38) nonsense probably null
Stratofortress UTSW 12 4,624,927 (GRCm38) missense probably damaging 1.00
Underground UTSW 12 4,701,276 (GRCm38) missense probably damaging 1.00
Vole UTSW 12 4,673,420 (GRCm38) nonsense probably null
R0101:Itsn2 UTSW 12 4,633,058 (GRCm38) unclassified probably benign
R0268:Itsn2 UTSW 12 4,700,333 (GRCm38) missense probably benign 0.12
R0584:Itsn2 UTSW 12 4,697,180 (GRCm38) missense probably benign
R0604:Itsn2 UTSW 12 4,658,189 (GRCm38) missense probably benign 0.01
R0639:Itsn2 UTSW 12 4,712,556 (GRCm38) missense probably damaging 0.99
R0738:Itsn2 UTSW 12 4,635,681 (GRCm38) missense probably benign 0.17
R1132:Itsn2 UTSW 12 4,658,464 (GRCm38) missense probably damaging 1.00
R1163:Itsn2 UTSW 12 4,712,009 (GRCm38) missense probably benign 0.30
R1169:Itsn2 UTSW 12 4,639,694 (GRCm38) missense probably damaging 1.00
R1258:Itsn2 UTSW 12 4,673,464 (GRCm38) missense probably damaging 1.00
R1297:Itsn2 UTSW 12 4,700,378 (GRCm38) missense probably damaging 1.00
R1423:Itsn2 UTSW 12 4,673,572 (GRCm38) missense probably damaging 0.97
R1572:Itsn2 UTSW 12 4,650,044 (GRCm38) missense probably benign 0.03
R1601:Itsn2 UTSW 12 4,658,452 (GRCm38) missense probably benign 0.01
R1628:Itsn2 UTSW 12 4,629,652 (GRCm38) missense probably benign
R1650:Itsn2 UTSW 12 4,637,767 (GRCm38) missense probably damaging 0.97
R1752:Itsn2 UTSW 12 4,711,950 (GRCm38) splice site probably null
R1758:Itsn2 UTSW 12 4,658,160 (GRCm38) missense possibly damaging 0.83
R1942:Itsn2 UTSW 12 4,639,670 (GRCm38) nonsense probably null
R1976:Itsn2 UTSW 12 4,672,733 (GRCm38) splice site probably benign
R2000:Itsn2 UTSW 12 4,666,176 (GRCm38) nonsense probably null
R2060:Itsn2 UTSW 12 4,627,879 (GRCm38) missense probably damaging 1.00
R2119:Itsn2 UTSW 12 4,707,025 (GRCm38) missense probably benign 0.32
R2168:Itsn2 UTSW 12 4,633,044 (GRCm38) unclassified probably benign
R2394:Itsn2 UTSW 12 4,707,005 (GRCm38) missense possibly damaging 0.86
R2860:Itsn2 UTSW 12 4,700,315 (GRCm38) splice site probably benign
R2861:Itsn2 UTSW 12 4,700,315 (GRCm38) splice site probably benign
R2900:Itsn2 UTSW 12 4,630,713 (GRCm38) unclassified probably benign
R2991:Itsn2 UTSW 12 4,658,474 (GRCm38) missense probably benign 0.01
R3087:Itsn2 UTSW 12 4,666,303 (GRCm38) missense probably damaging 1.00
R3881:Itsn2 UTSW 12 4,634,546 (GRCm38) unclassified probably benign
R4022:Itsn2 UTSW 12 4,624,927 (GRCm38) missense probably damaging 1.00
R4332:Itsn2 UTSW 12 4,712,611 (GRCm38) missense possibly damaging 0.72
R4657:Itsn2 UTSW 12 4,713,197 (GRCm38) makesense probably null
R4727:Itsn2 UTSW 12 4,707,660 (GRCm38) missense probably damaging 0.99
R4745:Itsn2 UTSW 12 4,661,944 (GRCm38) missense probably damaging 1.00
R4770:Itsn2 UTSW 12 4,627,892 (GRCm38) missense probably damaging 1.00
R4905:Itsn2 UTSW 12 4,634,583 (GRCm38) unclassified probably benign
R5269:Itsn2 UTSW 12 4,633,553 (GRCm38) unclassified probably benign
R5314:Itsn2 UTSW 12 4,627,960 (GRCm38) missense probably benign 0.09
R5345:Itsn2 UTSW 12 4,672,783 (GRCm38) missense probably damaging 1.00
R5399:Itsn2 UTSW 12 4,653,535 (GRCm38) missense probably benign 0.22
R5725:Itsn2 UTSW 12 4,630,767 (GRCm38) unclassified probably benign
R5773:Itsn2 UTSW 12 4,707,089 (GRCm38) missense probably damaging 1.00
R6116:Itsn2 UTSW 12 4,629,939 (GRCm38) unclassified probably benign
R6254:Itsn2 UTSW 12 4,624,982 (GRCm38) splice site probably null
R6325:Itsn2 UTSW 12 4,706,351 (GRCm38) missense probably damaging 1.00
R6361:Itsn2 UTSW 12 4,629,655 (GRCm38) missense probably benign 0.18
R6456:Itsn2 UTSW 12 4,629,923 (GRCm38) unclassified probably benign
R6494:Itsn2 UTSW 12 4,634,792 (GRCm38) nonsense probably null
R6854:Itsn2 UTSW 12 4,652,382 (GRCm38) missense probably benign 0.37
R6941:Itsn2 UTSW 12 4,629,641 (GRCm38) missense probably benign 0.05
R6961:Itsn2 UTSW 12 4,673,420 (GRCm38) nonsense probably null
R7326:Itsn2 UTSW 12 4,632,985 (GRCm38) missense unknown
R7387:Itsn2 UTSW 12 4,639,781 (GRCm38) missense probably damaging 1.00
R7465:Itsn2 UTSW 12 4,706,983 (GRCm38) nonsense probably null
R7471:Itsn2 UTSW 12 4,708,198 (GRCm38) missense probably benign 0.43
R7814:Itsn2 UTSW 12 4,658,561 (GRCm38) missense probably benign 0.14
R7854:Itsn2 UTSW 12 4,701,276 (GRCm38) missense probably damaging 1.00
R7879:Itsn2 UTSW 12 4,701,265 (GRCm38) missense probably benign 0.16
R7990:Itsn2 UTSW 12 4,635,629 (GRCm38) missense unknown
R8009:Itsn2 UTSW 12 4,664,553 (GRCm38) missense probably benign 0.12
R8115:Itsn2 UTSW 12 4,673,602 (GRCm38) missense possibly damaging 0.90
R8143:Itsn2 UTSW 12 4,633,003 (GRCm38) missense unknown
R8248:Itsn2 UTSW 12 4,662,052 (GRCm38) missense probably benign 0.00
R8735:Itsn2 UTSW 12 4,671,474 (GRCm38) missense probably damaging 1.00
R8748:Itsn2 UTSW 12 4,701,337 (GRCm38) missense probably benign 0.36
R9018:Itsn2 UTSW 12 4,658,091 (GRCm38) missense possibly damaging 0.57
R9386:Itsn2 UTSW 12 4,629,730 (GRCm38) missense unknown
R9681:Itsn2 UTSW 12 4,633,499 (GRCm38) missense unknown
Z1088:Itsn2 UTSW 12 4,712,472 (GRCm38) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGTGGTGACATATTTCTCTAGACTG -3'
(R):5'- AGCACTTTGGGGTTTACAAATGATG -3'

Sequencing Primer
(F):5'- CTCTAGACTGTAAACACCTTCATGTG -3'
(R):5'- AACTCTTACATTCTGTCTTGA -3'
Posted On 2016-10-24