Mutagenetix > Incidental Mutation

Incidental Mutation 'R5566:Cyp39a1'

436871

Institutional Source

Beutler Lab

Gene Symbol

Cyp39a1

Ensembl Gene

ENSMUSG00000023963

Gene Name

cytochrome P450, family 39, subfamily a, polypeptide 1

Synonyms

oxysterol 7-alpha-hydroxylase

MMRRC Submission

043123-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.082) question?

Stock #

R5566 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

43667425-43751431 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 43685208 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 224 (W224R)

Ref Sequence

ENSEMBL: ENSMUSP00000130073 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000170988]

AlphaFold

Q9JKJ9

Predicted Effect

possibly damaging
Transcript: ENSMUST00000170988
AA Change: W224R

PolyPhen 2 Score 0.921 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000130073
Gene: ENSMUSG00000023963
AA Change: W224R

Domain	Start	End	E-Value	Type
Pfam:p450	32	464	1.9e-52	PFAM

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.4%
20x: 95.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This endoplasmic reticulum protein is involved in the conversion of cholesterol to bile acids. Its substrates include the oxysterols 25-hydroxycholesterol, 27-hydroxycholesterol and 24-hydroxycholesterol. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3110002H16Rik	T	C	18: 12,180,692 (GRCm38)	I26T	possibly damaging	Het
Abca13	T	A	11: 9,294,615 (GRCm38)	Y2159*	probably null	Het
Abca3	A	G	17: 24,383,927 (GRCm38)	T499A	probably benign	Het
Abcb5	T	A	12: 118,935,967 (GRCm38)	T322S	probably damaging	Het
Adamts4	T	A	1: 171,250,850 (GRCm38)	M1K	probably null	Het
Adamtsl4	C	T	3: 95,685,455 (GRCm38)		probably null	Het
Adh4	A	T	3: 138,424,189 (GRCm38)	I259F	probably damaging	Het
Aff3	G	A	1: 38,181,424 (GRCm38)	S1135F	probably damaging	Het
Arhgef16	T	C	4: 154,285,648 (GRCm38)	D280G	probably benign	Het
Baiap3	T	C	17: 25,251,733 (GRCm38)	E71G	probably damaging	Het
BC030867	T	A	11: 102,255,833 (GRCm38)	S312T	probably damaging	Het
Calb2	A	G	8: 110,152,700 (GRCm38)	I91T	possibly damaging	Het
Ccr5	A	G	9: 124,124,660 (GRCm38)	N100S	probably benign	Het
Cep57	G	T	9: 13,821,575 (GRCm38)	R25S	probably damaging	Het
Chadl	A	G	15: 81,695,878 (GRCm38)	L52P	probably damaging	Het
Clec12b	T	C	6: 129,385,475 (GRCm38)	T6A	probably damaging	Het
Cnga1	T	A	5: 72,618,250 (GRCm38)	N43Y	probably damaging	Het
Col20a1	A	T	2: 180,986,523 (GRCm38)		probably null	Het
Csmd2	T	C	4: 128,462,889 (GRCm38)		probably null	Het
Ctps	A	T	4: 120,554,103 (GRCm38)		probably null	Het
Defb29	A	T	2: 152,538,928 (GRCm38)	Y54N	probably benign	Het
Dmbt1	A	T	7: 131,106,273 (GRCm38)	D1241V	probably damaging	Het
Dnah1	A	T	14: 31,274,366 (GRCm38)	I2671K	probably benign	Het
Dnah2	C	A	11: 69,516,569 (GRCm38)	E158*	probably null	Het
Edar	A	G	10: 58,628,641 (GRCm38)	S59P	possibly damaging	Het
Egr2	T	A	10: 67,540,766 (GRCm38)	C339*	probably null	Het
Eif5b	G	A	1: 38,045,684 (GRCm38)	V871I	possibly damaging	Het
Eif5b	G	A	1: 38,051,247 (GRCm38)	G1169E	probably damaging	Het
Erap1	A	G	13: 74,662,412 (GRCm38)	Y290C	probably damaging	Het
Fastkd5	T	A	2: 130,614,301 (GRCm38)	T790S	possibly damaging	Het
Fkrp	C	T	7: 16,810,924 (GRCm38)	V338M	probably damaging	Het
Gabra6	T	C	11: 42,307,490 (GRCm38)	T378A	probably benign	Het
Gm4924	C	A	10: 82,378,641 (GRCm38)	Q17K	possibly damaging	Het
Gm9847	A	G	12: 14,494,999 (GRCm38)		noncoding transcript	Het
Gpr108	A	G	17: 57,236,919 (GRCm38)	F429S	probably damaging	Het
Gpr162	G	A	6: 124,860,938 (GRCm38)	R250*	probably null	Het
Gtf2a1	A	T	12: 91,567,594 (GRCm38)	D295E	possibly damaging	Het
Gtf2h3	C	T	5: 124,584,297 (GRCm38)	T121I	probably benign	Het
Herc1	T	A	9: 66,465,537 (GRCm38)	M3125K	possibly damaging	Het
Hoxb6	T	A	11: 96,300,754 (GRCm38)	Y167*	probably null	Het
Htt	T	C	5: 34,849,075 (GRCm38)	Y1443H	probably damaging	Het
Il21r	A	G	7: 125,625,298 (GRCm38)	D28G	probably damaging	Het
Impact	T	G	18: 12,974,762 (GRCm38)	V29G	probably damaging	Het
Itpr3	A	G	17: 27,115,952 (GRCm38)	T2147A	possibly damaging	Het
Itsn2	T	A	12: 4,626,554 (GRCm38)	L50Q	probably damaging	Het
Jade1	A	G	3: 41,604,903 (GRCm38)	D473G	possibly damaging	Het
Kif26a	T	G	12: 112,157,354 (GRCm38)	L131R	probably damaging	Het
Kif2a	A	T	13: 106,993,924 (GRCm38)	M1K	probably null	Het
Lrsam1	C	A	2: 32,941,858 (GRCm38)	Q368H	probably damaging	Het
Macf1	T	C	4: 123,435,164 (GRCm38)	Q4592R	probably damaging	Het
Map3k5	T	C	10: 20,110,719 (GRCm38)	V893A	probably damaging	Het
Med13l	G	T	5: 118,728,665 (GRCm38)	V595F	possibly damaging	Het
Mocs1	T	A	17: 49,454,183 (GRCm38)	L435Q	possibly damaging	Het
Mtmr4	T	C	11: 87,604,530 (GRCm38)	L471P	probably damaging	Het
Myo7a	T	C	7: 98,064,816 (GRCm38)	E1616G	possibly damaging	Het
Nacad	T	A	11: 6,602,136 (GRCm38)	S352C	probably damaging	Het
Nfat5	T	A	8: 107,369,135 (GRCm38)	M817K	possibly damaging	Het
Ofcc1	C	A	13: 40,094,653 (GRCm38)	L668F	probably damaging	Het
Olfr1062	G	A	2: 86,423,377 (GRCm38)	Q100*	probably null	Het
Olfr18	T	C	9: 20,313,969 (GRCm38)	Q309R	probably benign	Het
Olfr527	C	A	7: 140,336,067 (GRCm38)	D68E	probably damaging	Het
Plxnb2	T	C	15: 89,164,020 (GRCm38)	T696A	probably benign	Het
Prkab2	T	A	3: 97,662,293 (GRCm38)	F58L	probably benign	Het
Prpf4	G	T	4: 62,415,969 (GRCm38)	L220F	probably benign	Het
Rad18	A	T	6: 112,681,346 (GRCm38)	D199E	probably benign	Het
Raet1e	T	C	10: 22,174,405 (GRCm38)	L29P	probably damaging	Het
Ralgapb	A	C	2: 158,494,710 (GRCm38)	T1089P	possibly damaging	Het
Rest	A	G	5: 77,282,326 (GRCm38)	E864G	probably benign	Het
Rgsl1	T	A	1: 153,793,774 (GRCm38)	I289F	probably damaging	Het
Rint1	T	C	5: 23,810,953 (GRCm38)	Y406H	probably damaging	Het
Rpl31	C	T	1: 39,370,027 (GRCm38)	R41C	probably benign	Het
Scn8a	T	C	15: 100,974,534 (GRCm38)	S485P	probably damaging	Het
Slamf1	T	A	1: 171,787,970 (GRCm38)	V249E	possibly damaging	Het
Slc39a12	C	T	2: 14,407,603 (GRCm38)	T362I	possibly damaging	Het
Sos1	C	T	17: 80,453,890 (GRCm38)	V126I	possibly damaging	Het
Srcap	T	C	7: 127,525,303 (GRCm38)	F215S	probably damaging	Het
Supt4a	T	A	11: 87,743,287 (GRCm38)	S110T	probably benign	Het
Tbc1d30	T	A	10: 121,302,110 (GRCm38)	T232S	probably damaging	Het
Tctex1d2	A	G	16: 32,419,900 (GRCm38)	Y31C	probably damaging	Het
Tenm3	A	G	8: 48,279,006 (GRCm38)	C1288R	probably damaging	Het
Tespa1	T	A	10: 130,355,487 (GRCm38)	L100*	probably null	Het
Tgm1	C	A	14: 55,712,436 (GRCm38)	R105L	probably damaging	Het
Tgoln1	G	A	6: 72,616,035 (GRCm38)	T154I	possibly damaging	Het
Trp53i13	G	A	11: 77,508,726 (GRCm38)	T259I	probably damaging	Het
Tubgcp4	T	A	2: 121,184,770 (GRCm38)	F320I	possibly damaging	Het
Vmn1r21	A	C	6: 57,844,094 (GRCm38)	Y122D	probably benign	Het
Vmn1r75	T	A	7: 11,880,480 (GRCm38)	D46E	probably damaging	Het
Vmn2r120	A	T	17: 57,545,290 (GRCm38)	L9M	possibly damaging	Het
Vmn2r59	A	G	7: 42,046,823 (GRCm38)	I165T	possibly damaging	Het
Vmn2r76	A	T	7: 86,226,078 (GRCm38)	Y564N	probably damaging	Het
Wee1	G	T	7: 110,126,050 (GRCm38)	E300*	probably null	Het
Xdh	T	C	17: 73,893,622 (GRCm38)	D1168G	probably damaging	Het
Zcchc6	A	T	13: 59,788,629 (GRCm38)	C817*	probably null	Het
Zfp54	A	G	17: 21,433,444 (GRCm38)	T67A	probably damaging	Het
Zfp941	G	T	7: 140,812,766 (GRCm38)	H227N	probably benign	Het
Zpr1	T	A	9: 46,281,075 (GRCm38)	V399D	possibly damaging	Het
Zzz3	A	G	3: 152,455,824 (GRCm38)	E285G	probably damaging	Het

Other mutations in Cyp39a1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00972:Cyp39a1	APN	17	43,701,543 (GRCm38)	missense	probably benign	0.01
IGL01070:Cyp39a1	APN	17	43,683,022 (GRCm38)	missense	probably benign	0.00
IGL01606:Cyp39a1	APN	17	43,746,618 (GRCm38)	splice site	probably benign
IGL01769:Cyp39a1	APN	17	43,749,915 (GRCm38)	missense	possibly damaging	0.53
IGL01916:Cyp39a1	APN	17	43,731,050 (GRCm38)	missense	probably damaging	1.00
IGL02374:Cyp39a1	APN	17	43,749,981 (GRCm38)	utr 3 prime	probably benign
IGL02402:Cyp39a1	APN	17	43,691,722 (GRCm38)	missense	probably benign	0.07
IGL03097:Cyp39a1	UTSW	17	43,683,050 (GRCm38)	nonsense	probably null
R0230:Cyp39a1	UTSW	17	43,732,012 (GRCm38)	missense	probably damaging	1.00
R1244:Cyp39a1	UTSW	17	43,749,945 (GRCm38)	missense	probably benign	0.13
R1572:Cyp39a1	UTSW	17	43,680,129 (GRCm38)	missense	probably damaging	1.00
R1656:Cyp39a1	UTSW	17	43,667,619 (GRCm38)	missense	possibly damaging	0.74
R4036:Cyp39a1	UTSW	17	43,676,940 (GRCm38)	missense	probably damaging	0.97
R4308:Cyp39a1	UTSW	17	43,730,964 (GRCm38)	splice site	probably null
R5081:Cyp39a1	UTSW	17	43,746,597 (GRCm38)	missense	probably damaging	1.00
R5197:Cyp39a1	UTSW	17	43,746,538 (GRCm38)	missense	possibly damaging	0.67
R5405:Cyp39a1	UTSW	17	43,676,940 (GRCm38)	missense	probably damaging	1.00
R5578:Cyp39a1	UTSW	17	43,680,140 (GRCm38)	missense	possibly damaging	0.91
R6045:Cyp39a1	UTSW	17	43,731,991 (GRCm38)	missense	probably damaging	1.00
R6495:Cyp39a1	UTSW	17	43,691,694 (GRCm38)	missense	probably benign	0.41
R7191:Cyp39a1	UTSW	17	43,731,019 (GRCm38)	nonsense	probably null
R7431:Cyp39a1	UTSW	17	43,683,015 (GRCm38)	missense	probably benign
R7522:Cyp39a1	UTSW	17	43,667,479 (GRCm38)	start gained	probably benign
R7620:Cyp39a1	UTSW	17	43,725,653 (GRCm38)	splice site	probably null
R8022:Cyp39a1	UTSW	17	43,746,577 (GRCm38)	missense	probably damaging	1.00
R8143:Cyp39a1	UTSW	17	43,725,626 (GRCm38)	missense	probably benign	0.39
R8483:Cyp39a1	UTSW	17	43,683,007 (GRCm38)	missense	probably benign	0.01
R8549:Cyp39a1	UTSW	17	43,730,995 (GRCm38)	missense	possibly damaging	0.95
R8964:Cyp39a1	UTSW	17	43,691,667 (GRCm38)	missense	probably benign	0.02
R9730:Cyp39a1	UTSW	17	43,680,138 (GRCm38)	missense	probably benign	0.01
Z1176:Cyp39a1	UTSW	17	43,731,048 (GRCm38)	missense	probably damaging	1.00
Z1176:Cyp39a1	UTSW	17	43,725,577 (GRCm38)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TGAAATGTATTGACCTGCCCC -3'
(R):5'- CCAGCATATCACTTGGGCATAC -3'

Sequencing Primer
(F):5'- ACCCGTGGTCTTATAATTCAGGAG -3'
(R):5'- TACCCAATCCCCCACATCTCCTAG -3'

Posted On

2016-10-24