Incidental Mutation 'R5568:Xdh'
ID 437069
Institutional Source Beutler Lab
Gene Symbol Xdh
Ensembl Gene ENSMUSG00000024066
Gene Name xanthine dehydrogenase
Synonyms xanthine oxidase, XO, Xor, Xox1, Xox-1
MMRRC Submission 043125-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.483) question?
Stock # R5568 (G1)
Quality Score 225
Status Not validated
Chromosome 17
Chromosomal Location 73883908-73950182 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to C at 73943885 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 24 (D24G)
Ref Sequence ENSEMBL: ENSMUSP00000024866 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000024866]
AlphaFold Q00519
Predicted Effect possibly damaging
Transcript: ENSMUST00000024866
AA Change: D24G

PolyPhen 2 Score 0.903 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000024866
Gene: ENSMUSG00000024066
AA Change: D24G

DomainStartEndE-ValueType
Pfam:Fer2 11 81 5e-12 PFAM
Pfam:Fer2_2 90 163 4.1e-31 PFAM
low complexity region 169 182 N/A INTRINSIC
Pfam:FAD_binding_5 234 414 4.9e-47 PFAM
CO_deh_flav_C 421 525 1.16e-24 SMART
Ald_Xan_dh_C 590 696 1.23e-46 SMART
Pfam:Ald_Xan_dh_C2 704 1239 1e-200 PFAM
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.3%
  • 20x: 95.0%
Validation Efficiency
MGI Phenotype FUNCTION: This gene encodes a member of the xanthine dehydrogenase protein family. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. The encoded protein exists as two distinct enzymatic forms, either as xanthine dehydrogenase, or as xanthine oxidase, and functions in purine degradation. Additional studies also suggest a role in adipogenesis, and a function as a structural protein in milk fat droplets in the lactating mammary gland. [provided by RefSeq, Jan 2014]
PHENOTYPE: Homozygotes for a null allele are small and die prematurely while heterozygous females show a lactation defect. Most homozygotes for another null allele die within the first month of renal failure associated with uric acid depletion, renal tubular damage, inflammation, fibrosis and oxidative stress. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 96 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadacl4 T C 4: 144,622,794 (GRCm38) V207A probably benign Het
Abcc10 C A 17: 46,303,908 (GRCm38) probably null Het
Abcc9 A C 6: 142,689,016 (GRCm38) V174G possibly damaging Het
Abl1 C T 2: 31,779,074 (GRCm38) A155V probably damaging Het
Aco2 T A 15: 81,903,586 (GRCm38) D212E probably damaging Het
Adam26b A T 8: 43,520,492 (GRCm38) M491K probably benign Het
Anapc5 G A 5: 122,791,925 (GRCm38) probably benign Het
Atf7 A G 15: 102,563,322 (GRCm38) I46T probably damaging Het
Cacna1b A G 2: 24,607,600 (GRCm38) S2100P probably damaging Het
Capn5 T A 7: 98,125,930 (GRCm38) D501V probably damaging Het
Cc2d2a A G 5: 43,709,091 (GRCm38) M748V probably damaging Het
Cd300c2 T C 11: 115,000,836 (GRCm38) T71A probably damaging Het
Chmp2a T C 7: 13,033,831 (GRCm38) M56V probably benign Het
Cilp A C 9: 65,280,233 (GRCm38) R1203S probably benign Het
Clp1 T A 2: 84,725,978 (GRCm38) K53* probably null Het
Crhbp T A 13: 95,442,229 (GRCm38) D128V probably damaging Het
Crispld1 T A 1: 17,750,271 (GRCm38) I292N probably benign Het
Cyp2c68 A T 19: 39,689,082 (GRCm38) I488N probably benign Het
Cyp3a57 A T 5: 145,370,646 (GRCm38) M149L probably benign Het
Ddx24 T A 12: 103,424,288 (GRCm38) Q59L possibly damaging Het
Ddx27 A G 2: 167,029,519 (GRCm38) H512R possibly damaging Het
Dlgap4 T A 2: 156,762,901 (GRCm38) *993K probably null Het
Dmxl2 A T 9: 54,423,359 (GRCm38) probably null Het
Dus4l A T 12: 31,646,713 (GRCm38) F88L probably damaging Het
Ep400 A T 5: 110,756,205 (GRCm38) V176E probably damaging Het
Fat3 T A 9: 16,376,923 (GRCm38) K435* probably null Het
Fsip2 T C 2: 82,986,564 (GRCm38) C4214R probably benign Het
Garin5a T G 7: 44,501,004 (GRCm38) S207A probably damaging Het
Gfral T C 9: 76,164,805 (GRCm38) *394W probably null Het
Glis1 T C 4: 107,619,635 (GRCm38) S518P probably damaging Het
H2-T10 A G 17: 36,119,187 (GRCm38) probably null Het
Hsbp1l1 T C 18: 80,235,464 (GRCm38) T35A possibly damaging Het
Ighv5-12 A G 12: 113,702,217 (GRCm38) F87S probably damaging Het
Ints13 A C 6: 146,576,357 (GRCm38) D31E probably damaging Het
Kbtbd12 C T 6: 88,618,627 (GRCm38) D74N probably damaging Het
Klrb1c A G 6: 128,788,914 (GRCm38) probably benign Het
Kmt5b A T 19: 3,786,538 (GRCm38) H25L probably benign Het
Krt28 A T 11: 99,371,384 (GRCm38) M260K probably damaging Het
Krt79 A G 15: 101,929,785 (GRCm38) S512P probably damaging Het
Lama1 A T 17: 67,768,298 (GRCm38) probably null Het
Maneal T C 4: 124,857,144 (GRCm38) E273G possibly damaging Het
Map4k3 T A 17: 80,663,998 (GRCm38) Y80F possibly damaging Het
Mbd6 A G 10: 127,283,428 (GRCm38) V946A possibly damaging Het
Mfsd14b A T 13: 65,072,122 (GRCm38) probably null Het
Mrpl46 C G 7: 78,780,494 (GRCm38) W176S probably damaging Het
Muc19 A G 15: 91,884,274 (GRCm38) noncoding transcript Het
Mup3 T G 4: 62,084,572 (GRCm38) E184A possibly damaging Het
Myo9a A G 9: 59,874,628 (GRCm38) H1699R probably benign Het
Ndrg2 T A 14: 51,906,963 (GRCm38) T269S probably damaging Het
Nfatc1 A T 18: 80,649,822 (GRCm38) V688D probably benign Het
Ninj2 T C 6: 120,198,709 (GRCm38) I101T probably benign Het
Nlrp10 T A 7: 108,924,261 (GRCm38) M671L probably benign Het
Npsr1 T A 9: 24,313,214 (GRCm38) L296I probably damaging Het
Or10d5 A G 9: 39,950,687 (GRCm38) L28P probably benign Het
Or52r1b G T 7: 103,042,310 (GRCm38) R272L possibly damaging Het
Pacsin1 T A 17: 27,708,048 (GRCm38) D242E probably damaging Het
Pcdh1 T C 18: 38,197,367 (GRCm38) Y861C probably damaging Het
Pcdha12 T C 18: 37,020,390 (GRCm38) L54P probably damaging Het
Pcdhb18 T A 18: 37,491,800 (GRCm38) S728T probably benign Het
Phyhd1 T A 2: 30,277,010 (GRCm38) H108Q probably damaging Het
Plcb1 A T 2: 135,370,593 (GRCm38) I1035F probably damaging Het
Plcl1 T C 1: 55,696,150 (GRCm38) S217P possibly damaging Het
Plppr2 G A 9: 21,941,129 (GRCm38) R103H probably damaging Het
Plxnb2 G A 15: 89,157,435 (GRCm38) T1722I probably damaging Het
Pole3 T C 4: 62,524,431 (GRCm38) N53S probably damaging Het
Ptk6 A T 2: 181,199,695 (GRCm38) N140K possibly damaging Het
Rab12 C T 17: 66,497,423 (GRCm38) R180H probably damaging Het
Rab36 G T 10: 75,052,479 (GRCm38) V252L probably benign Het
Ranbp3 T C 17: 56,701,543 (GRCm38) probably null Het
Rapgef2 A G 3: 79,104,001 (GRCm38) L259P probably damaging Het
Rigi T A 4: 40,222,140 (GRCm38) M380L probably benign Het
Scaf4 GGCTGCTGCTGCTGCTGCTGCTGCTG GGCTGCTGCTGCTGCTGCTGCTG 16: 90,229,857 (GRCm38) probably benign Het
Scd2 T C 19: 44,299,703 (GRCm38) F178S probably damaging Het
Shmt2 A G 10: 127,520,381 (GRCm38) S87P probably damaging Het
Slf1 T A 13: 77,046,704 (GRCm38) D834V probably damaging Het
Sorcs2 A C 5: 36,046,530 (GRCm38) Y540* probably null Het
Srpk2 T A 5: 23,525,699 (GRCm38) Q274L possibly damaging Het
Stradb T A 1: 58,992,742 (GRCm38) M271K possibly damaging Het
Tfec T A 6: 16,867,593 (GRCm38) Q16L possibly damaging Het
Tfg T C 16: 56,701,087 (GRCm38) T63A probably benign Het
Ticrr T A 7: 79,695,296 (GRCm38) C1636* probably null Het
Ticrr G A 7: 79,689,967 (GRCm38) probably null Het
Tln2 A G 9: 67,311,865 (GRCm38) I266T probably damaging Het
Tmcc1 G C 6: 116,022,110 (GRCm38) R323G possibly damaging Het
Tnnt3 A G 7: 142,512,040 (GRCm38) E138G probably damaging Het
Tpm2 C A 4: 43,522,692 (GRCm38) E75* probably null Het
Ttn T G 2: 76,750,578 (GRCm38) T23324P probably damaging Het
Ubr4 T G 4: 139,392,038 (GRCm38) L176R probably damaging Het
Uhrf2 G T 19: 30,039,088 (GRCm38) D46Y probably damaging Het
Ulbp1 A C 10: 7,473,281 (GRCm38) S21A unknown Het
Usp17lb C T 7: 104,841,208 (GRCm38) G170R probably damaging Het
Utp15 T C 13: 98,257,925 (GRCm38) N153S probably benign Het
Vcan T A 13: 89,688,671 (GRCm38) E2918V probably damaging Het
Vmn1r174 T A 7: 23,754,494 (GRCm38) I195K probably damaging Het
Vmn1r76 C T 7: 11,931,135 (GRCm38) V16I probably benign Het
Xylb T A 9: 119,361,132 (GRCm38) H68Q probably benign Het
Other mutations in Xdh
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00493:Xdh APN 17 73,923,106 (GRCm38) missense possibly damaging 0.58
IGL00556:Xdh APN 17 73,884,435 (GRCm38) makesense probably null
IGL01524:Xdh APN 17 73,923,137 (GRCm38) critical splice acceptor site probably null
IGL01604:Xdh APN 17 73,909,337 (GRCm38) missense probably benign 0.02
IGL01625:Xdh APN 17 73,916,786 (GRCm38) critical splice donor site probably null
IGL01778:Xdh APN 17 73,900,280 (GRCm38) missense probably benign 0.00
IGL01804:Xdh APN 17 73,892,759 (GRCm38) missense probably damaging 1.00
IGL01825:Xdh APN 17 73,891,245 (GRCm38) missense probably damaging 1.00
IGL01929:Xdh APN 17 73,934,855 (GRCm38) missense probably damaging 1.00
IGL02068:Xdh APN 17 73,913,950 (GRCm38) missense probably damaging 1.00
IGL02079:Xdh APN 17 73,891,277 (GRCm38) missense probably damaging 1.00
IGL02210:Xdh APN 17 73,943,895 (GRCm38) missense probably benign 0.00
IGL02261:Xdh APN 17 73,913,965 (GRCm38) missense possibly damaging 0.81
IGL02365:Xdh APN 17 73,943,890 (GRCm38) missense probably benign 0.14
IGL02424:Xdh APN 17 73,926,570 (GRCm38) missense probably benign 0.00
IGL02491:Xdh APN 17 73,886,464 (GRCm38) missense probably damaging 0.99
IGL02525:Xdh APN 17 73,924,995 (GRCm38) missense possibly damaging 0.91
IGL02578:Xdh APN 17 73,906,246 (GRCm38) missense probably damaging 1.00
IGL02793:Xdh APN 17 73,900,581 (GRCm38) missense probably damaging 1.00
IGL02939:Xdh APN 17 73,943,845 (GRCm38) critical splice donor site probably null
IGL03327:Xdh APN 17 73,916,792 (GRCm38) missense probably benign
IGL03345:Xdh APN 17 73,906,032 (GRCm38) missense probably damaging 0.98
IGL03353:Xdh APN 17 73,895,786 (GRCm38) missense possibly damaging 0.65
inky UTSW 17 73,921,351 (GRCm38) missense probably damaging 1.00
nucleus UTSW 17 73,899,012 (GRCm38) nonsense probably null
squidgame UTSW 17 73,939,836 (GRCm38) missense probably benign
R0018:Xdh UTSW 17 73,925,025 (GRCm38) missense probably benign 0.00
R0018:Xdh UTSW 17 73,925,025 (GRCm38) missense probably benign 0.00
R0033:Xdh UTSW 17 73,907,632 (GRCm38) missense probably benign 0.06
R0079:Xdh UTSW 17 73,891,218 (GRCm38) missense probably damaging 1.00
R0086:Xdh UTSW 17 73,884,438 (GRCm38) missense probably benign
R0319:Xdh UTSW 17 73,906,101 (GRCm38) splice site probably benign
R0336:Xdh UTSW 17 73,922,463 (GRCm38) missense possibly damaging 0.91
R0389:Xdh UTSW 17 73,898,362 (GRCm38) missense probably damaging 1.00
R0684:Xdh UTSW 17 73,943,891 (GRCm38) missense probably damaging 0.97
R0930:Xdh UTSW 17 73,923,082 (GRCm38) missense probably benign 0.00
R1073:Xdh UTSW 17 73,939,836 (GRCm38) missense probably benign
R1114:Xdh UTSW 17 73,941,149 (GRCm38) splice site probably benign
R1201:Xdh UTSW 17 73,918,418 (GRCm38) missense probably benign 0.05
R1230:Xdh UTSW 17 73,891,256 (GRCm38) missense probably damaging 1.00
R1351:Xdh UTSW 17 73,923,078 (GRCm38) missense probably benign 0.02
R1470:Xdh UTSW 17 73,891,112 (GRCm38) missense probably damaging 1.00
R1470:Xdh UTSW 17 73,891,112 (GRCm38) missense probably damaging 1.00
R1485:Xdh UTSW 17 73,914,019 (GRCm38) nonsense probably null
R1548:Xdh UTSW 17 73,913,901 (GRCm38) missense probably damaging 0.98
R1637:Xdh UTSW 17 73,900,578 (GRCm38) missense probably benign
R1641:Xdh UTSW 17 73,926,552 (GRCm38) missense probably benign
R1758:Xdh UTSW 17 73,910,209 (GRCm38) missense probably damaging 1.00
R1951:Xdh UTSW 17 73,907,658 (GRCm38) missense probably damaging 1.00
R1969:Xdh UTSW 17 73,892,751 (GRCm38) missense possibly damaging 0.55
R2024:Xdh UTSW 17 73,921,305 (GRCm38) missense possibly damaging 0.92
R2080:Xdh UTSW 17 73,909,325 (GRCm38) missense probably damaging 1.00
R2157:Xdh UTSW 17 73,922,537 (GRCm38) missense probably damaging 1.00
R2300:Xdh UTSW 17 73,891,265 (GRCm38) missense probably damaging 1.00
R3783:Xdh UTSW 17 73,893,595 (GRCm38) splice site probably benign
R3796:Xdh UTSW 17 73,907,658 (GRCm38) missense probably damaging 1.00
R3797:Xdh UTSW 17 73,907,658 (GRCm38) missense probably damaging 1.00
R3798:Xdh UTSW 17 73,907,658 (GRCm38) missense probably damaging 1.00
R3799:Xdh UTSW 17 73,907,658 (GRCm38) missense probably damaging 1.00
R3819:Xdh UTSW 17 73,906,725 (GRCm38) missense probably benign 0.35
R4085:Xdh UTSW 17 73,916,879 (GRCm38) missense probably benign 0.35
R4240:Xdh UTSW 17 73,895,795 (GRCm38) missense possibly damaging 0.72
R4356:Xdh UTSW 17 73,915,690 (GRCm38) missense probably benign 0.01
R4522:Xdh UTSW 17 73,898,344 (GRCm38) missense probably damaging 1.00
R4523:Xdh UTSW 17 73,898,344 (GRCm38) missense probably damaging 1.00
R4524:Xdh UTSW 17 73,898,344 (GRCm38) missense probably damaging 1.00
R4600:Xdh UTSW 17 73,910,200 (GRCm38) missense probably benign 0.19
R4617:Xdh UTSW 17 73,918,394 (GRCm38) missense probably damaging 0.99
R4756:Xdh UTSW 17 73,886,386 (GRCm38) missense probably benign 0.24
R4761:Xdh UTSW 17 73,910,267 (GRCm38) missense possibly damaging 0.91
R4815:Xdh UTSW 17 73,906,215 (GRCm38) missense probably damaging 1.00
R4850:Xdh UTSW 17 73,898,335 (GRCm38) missense probably damaging 1.00
R4896:Xdh UTSW 17 73,910,243 (GRCm38) missense probably damaging 0.96
R4897:Xdh UTSW 17 73,900,708 (GRCm38) missense probably benign
R4923:Xdh UTSW 17 73,924,936 (GRCm38) missense possibly damaging 0.72
R4977:Xdh UTSW 17 73,898,970 (GRCm38) missense probably benign 0.05
R5030:Xdh UTSW 17 73,891,293 (GRCm38) missense probably damaging 1.00
R5185:Xdh UTSW 17 73,925,011 (GRCm38) missense probably damaging 1.00
R5347:Xdh UTSW 17 73,925,032 (GRCm38) missense probably benign
R5556:Xdh UTSW 17 73,897,764 (GRCm38) missense probably benign 0.21
R5566:Xdh UTSW 17 73,893,622 (GRCm38) missense probably damaging 1.00
R5635:Xdh UTSW 17 73,913,875 (GRCm38) missense possibly damaging 0.92
R5662:Xdh UTSW 17 73,941,115 (GRCm38) missense probably damaging 0.99
R5955:Xdh UTSW 17 73,898,320 (GRCm38) missense probably damaging 1.00
R6058:Xdh UTSW 17 73,906,269 (GRCm38) missense probably damaging 1.00
R6061:Xdh UTSW 17 73,921,347 (GRCm38) missense probably damaging 1.00
R6412:Xdh UTSW 17 73,935,907 (GRCm38) missense probably benign 0.09
R6526:Xdh UTSW 17 73,900,551 (GRCm38) missense probably damaging 0.97
R6558:Xdh UTSW 17 73,893,713 (GRCm38) missense possibly damaging 0.95
R6843:Xdh UTSW 17 73,923,130 (GRCm38) missense probably damaging 1.00
R6932:Xdh UTSW 17 73,922,562 (GRCm38) missense probably damaging 0.99
R7028:Xdh UTSW 17 73,943,873 (GRCm38) missense probably damaging 0.99
R7418:Xdh UTSW 17 73,913,965 (GRCm38) missense possibly damaging 0.81
R7503:Xdh UTSW 17 73,926,210 (GRCm38) missense probably damaging 1.00
R7653:Xdh UTSW 17 73,897,045 (GRCm38) missense probably benign 0.10
R7763:Xdh UTSW 17 73,934,834 (GRCm38) missense possibly damaging 0.69
R7768:Xdh UTSW 17 73,939,836 (GRCm38) missense probably benign
R7904:Xdh UTSW 17 73,922,472 (GRCm38) missense probably benign 0.09
R8010:Xdh UTSW 17 73,909,317 (GRCm38) nonsense probably null
R8067:Xdh UTSW 17 73,900,657 (GRCm38) missense probably benign 0.01
R8238:Xdh UTSW 17 73,886,417 (GRCm38) missense probably benign
R8253:Xdh UTSW 17 73,918,382 (GRCm38) missense possibly damaging 0.94
R8346:Xdh UTSW 17 73,913,943 (GRCm38) missense probably damaging 1.00
R8350:Xdh UTSW 17 73,934,842 (GRCm38) missense probably damaging 1.00
R8381:Xdh UTSW 17 73,912,461 (GRCm38) missense probably benign
R8427:Xdh UTSW 17 73,935,931 (GRCm38) missense probably damaging 1.00
R8465:Xdh UTSW 17 73,899,012 (GRCm38) nonsense probably null
R8478:Xdh UTSW 17 73,906,058 (GRCm38) missense probably benign 0.00
R8680:Xdh UTSW 17 73,922,505 (GRCm38) missense probably benign
R8802:Xdh UTSW 17 73,918,410 (GRCm38) missense probably benign 0.00
R8984:Xdh UTSW 17 73,921,351 (GRCm38) missense probably damaging 1.00
R8985:Xdh UTSW 17 73,921,351 (GRCm38) missense probably damaging 1.00
R8995:Xdh UTSW 17 73,898,374 (GRCm38) missense probably damaging 1.00
R9035:Xdh UTSW 17 73,910,227 (GRCm38) missense probably benign
R9149:Xdh UTSW 17 73,915,693 (GRCm38) missense probably benign
R9181:Xdh UTSW 17 73,925,011 (GRCm38) missense probably damaging 1.00
R9357:Xdh UTSW 17 73,926,546 (GRCm38) critical splice donor site probably null
R9357:Xdh UTSW 17 73,907,716 (GRCm38) missense probably damaging 0.97
R9609:Xdh UTSW 17 73,924,995 (GRCm38) missense possibly damaging 0.91
R9803:Xdh UTSW 17 73,922,460 (GRCm38) missense probably benign
X0019:Xdh UTSW 17 73,918,454 (GRCm38) missense probably damaging 1.00
Z1088:Xdh UTSW 17 73,886,428 (GRCm38) missense probably benign
Z1176:Xdh UTSW 17 73,923,042 (GRCm38) critical splice donor site probably null
Z1177:Xdh UTSW 17 73,897,695 (GRCm38) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGGATCACCCAAGGATTCTCAG -3'
(R):5'- TGGAATTCTAGGACCCGAGG -3'

Sequencing Primer
(F):5'- CTCAGTTATATTGAGTGCCACAGCTG -3'
(R):5'- CACGATTGTGTTTTACAGCTCATG -3'
Posted On 2016-10-24