Mutagenetix > Incidental Mutation

Incidental Mutation 'R5574:Cfap97'

437114

Institutional Source

Beutler Lab

Gene Symbol

Cfap97

Ensembl Gene

ENSMUSG00000031631

Gene Name

cilia and flagella associated protein 97

Synonyms

1110068E21Rik, 4933411K20Rik

MMRRC Submission

043129-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.066) question?

Stock #

R5574 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

46615515-46648627 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 46623179 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 190 (S190P)

Ref Sequence

ENSEMBL: ENSMUSP00000106005 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034048] [ENSMUST00000110376] [ENSMUST00000145229] [ENSMUST00000154040] [ENSMUST00000164504]

AlphaFold

Q6ZPR1

Predicted Effect

possibly damaging
Transcript: ENSMUST00000034048
AA Change: S190P

PolyPhen 2 Score 0.734 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000034048
Gene: ENSMUSG00000031631
AA Change: S190P

Domain	Start	End	E-Value	Type
low complexity region	113	126	N/A	INTRINSIC
low complexity region	176	201	N/A	INTRINSIC
low complexity region	287	294	N/A	INTRINSIC
Pfam:KIAA1430	352	457	4.4e-21	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000110376
AA Change: S190P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000106005
Gene: ENSMUSG00000031631
AA Change: S190P

Domain	Start	End	E-Value	Type
low complexity region	113	126	N/A	INTRINSIC
low complexity region	176	201	N/A	INTRINSIC
low complexity region	287	294	N/A	INTRINSIC
Pfam:KIAA1430	353	456	1.4e-19	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145080

Predicted Effect

probably damaging
Transcript: ENSMUST00000145229
AA Change: S190P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000115734
Gene: ENSMUSG00000031631
AA Change: S190P

Domain	Start	End	E-Value	Type
low complexity region	113	126	N/A	INTRINSIC
low complexity region	176	201	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000154040
AA Change: S190P

SMART Domains

Protein: ENSMUSP00000120522
Gene: ENSMUSG00000031631
AA Change: S190P

Domain	Start	End	E-Value	Type
low complexity region	113	126	N/A	INTRINSIC
low complexity region	176	201	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000164504
AA Change: S190P

PolyPhen 2 Score 0.734 (Sensitivity: 0.85; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000133211
Gene: ENSMUSG00000031631
AA Change: S190P

Domain	Start	End	E-Value	Type
low complexity region	113	126	N/A	INTRINSIC
low complexity region	176	201	N/A	INTRINSIC
low complexity region	287	294	N/A	INTRINSIC
Pfam:KIAA1430	352	457	4.4e-21	PFAM

Meta Mutation Damage Score

0.1834

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.7%
20x: 96.6%

Validation Efficiency

99% (68/69)

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700129C05Rik	T	A	14: 59,380,205 (GRCm39)	N31I	possibly damaging	Het
Acvr1b	T	A	15: 101,099,958 (GRCm39)	M304K	probably benign	Het
Adamts1	G	T	16: 85,596,530 (GRCm39)	D106E	probably damaging	Het
Atosa	A	T	9: 74,917,672 (GRCm39)	D757V	probably damaging	Het
Blm	C	A	7: 80,149,521 (GRCm39)	C696F	probably damaging	Het
Bnip3l-ps	T	A	12: 18,267,119 (GRCm39)		noncoding transcript	Het
Ccdc171	A	T	4: 83,611,990 (GRCm39)	N895I	probably damaging	Het
Cdhr4	A	T	9: 107,870,527 (GRCm39)		probably benign	Het
Chrnb1	A	C	11: 69,684,509 (GRCm39)		probably benign	Het
Clns1a	A	G	7: 97,370,165 (GRCm39)		probably benign	Het
Col8a2	G	A	4: 126,205,061 (GRCm39)		probably benign	Het
Cr2	T	A	1: 194,823,544 (GRCm39)	E721V	probably damaging	Het
Csk	A	G	9: 57,536,584 (GRCm39)	V172A	probably benign	Het
Cyp2g1	G	A	7: 26,520,165 (GRCm39)	V466M	possibly damaging	Het
Cyp4f13	A	G	17: 33,148,179 (GRCm39)	Y349H	probably benign	Het
Dnm1l	T	C	16: 16,147,685 (GRCm39)	Y205C	probably damaging	Het
Dync1i2	A	T	2: 71,063,994 (GRCm39)	T113S	probably benign	Het
Edem2	T	C	2: 155,558,075 (GRCm39)	E186G	probably damaging	Het
Eya2	G	A	2: 165,605,736 (GRCm39)	R380H	probably damaging	Het
Gldn	A	G	9: 54,220,206 (GRCm39)	T132A	probably damaging	Het
Gm13941	A	T	2: 110,930,951 (GRCm39)	I74K	unknown	Het
Gm3898	C	T	9: 43,741,339 (GRCm39)		noncoding transcript	Het
Ighmbp2	C	T	19: 3,321,536 (GRCm39)	V408I	probably benign	Het
Klhdc10	C	T	6: 30,439,864 (GRCm39)	L127F	possibly damaging	Het
Letm1	G	A	5: 33,926,730 (GRCm39)	T189M	possibly damaging	Het
Lrrc17	A	T	5: 21,775,355 (GRCm39)	I306F	possibly damaging	Het
Lrrk2	T	A	15: 91,671,219 (GRCm39)	V2000E	probably damaging	Het
Mettl9	A	T	7: 120,647,093 (GRCm39)	E66D	probably benign	Het
Mroh1	T	A	15: 76,318,131 (GRCm39)	V877D	probably benign	Het
Mycbp2	C	T	14: 103,380,203 (GRCm39)	V3760M	possibly damaging	Het
Nos3	A	G	5: 24,573,859 (GRCm39)	T208A	possibly damaging	Het
Npdc1	G	A	2: 25,298,957 (GRCm39)	D284N	probably damaging	Het
Obp2a	A	T	2: 25,590,842 (GRCm39)	T70S	possibly damaging	Het
Or4a72	C	T	2: 89,405,321 (GRCm39)	V250I	possibly damaging	Het
Or52a5b	T	G	7: 103,417,323 (GRCm39)	I94L	possibly damaging	Het
Or5al6	T	C	2: 85,976,535 (GRCm39)	D181G	probably damaging	Het
Or8b8	A	T	9: 37,808,877 (GRCm39)	Y59F	probably damaging	Het
Or8h10	A	G	2: 86,808,867 (GRCm39)	V91A	probably benign	Het
Pate2	A	G	9: 35,597,411 (GRCm39)		probably benign	Het
Pdzph1	A	G	17: 59,280,942 (GRCm39)	F447L	probably benign	Het
Pias1	A	G	9: 62,827,775 (GRCm39)	C211R	probably damaging	Het
Plb1	A	G	5: 32,487,291 (GRCm39)	S929G	probably benign	Het
Pramel32	T	G	4: 88,546,280 (GRCm39)	E354A	probably benign	Het
Prc1	G	A	7: 79,944,290 (GRCm39)		probably benign	Het
Prex2	A	G	1: 11,210,282 (GRCm39)	D574G	probably damaging	Het
Rapgef4	G	A	2: 71,864,464 (GRCm39)		probably null	Het
Rmc1	CTGTGTGTT	CTGTGTGTTGTGTGTT	18: 12,318,063 (GRCm39)		probably null	Het
Rock2	T	C	12: 17,011,642 (GRCm39)	M690T	possibly damaging	Het
Sinhcaf	C	T	6: 148,846,378 (GRCm39)		probably benign	Het
Slc18a2	A	G	19: 59,249,837 (GRCm39)	I25V	probably benign	Het
Slc9a5	T	A	8: 106,091,323 (GRCm39)	I701K	probably benign	Het
Sorcs1	T	A	19: 50,210,571 (GRCm39)	N765Y	probably damaging	Het
Ssh2	A	T	11: 77,340,941 (GRCm39)	I698L	probably benign	Het
Stam	A	G	2: 14,120,675 (GRCm39)	D58G	probably damaging	Het
Thsd4	C	A	9: 59,879,683 (GRCm39)	R1018L	probably damaging	Het
Tnxb	A	G	17: 34,929,998 (GRCm39)	T2911A	probably benign	Het
Trpm7	A	C	2: 126,654,950 (GRCm39)	F1329L	probably benign	Het
Ttll9	A	G	2: 152,826,168 (GRCm39)	E126G	possibly damaging	Het
Tubgcp5	G	A	7: 55,455,077 (GRCm39)	V258M	probably benign	Het
Unc45a	G	A	7: 79,984,604 (GRCm39)	A232V	probably damaging	Het
Utp14b	G	A	1: 78,644,126 (GRCm39)	V675M	probably damaging	Het
Vmn2r67	T	A	7: 84,801,099 (GRCm39)	H279L	probably benign	Het
Vmn2r75	G	T	7: 85,815,510 (GRCm39)	A118E	probably benign	Het
Wdr36	A	T	18: 32,999,012 (GRCm39)	Q886L	probably damaging	Het
Zfp433	T	A	10: 81,555,125 (GRCm39)	Y27*	probably null	Het
Zfp715	A	T	7: 42,960,463 (GRCm39)	S43T	possibly damaging	Het
Zfyve26	A	G	12: 79,286,698 (GRCm39)	S2297P	possibly damaging	Het

Other mutations in Cfap97

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00325:Cfap97	APN	8	46,623,222 (GRCm39)	missense	probably damaging	1.00
IGL01335:Cfap97	APN	8	46,623,492 (GRCm39)	missense	probably damaging	1.00
IGL02327:Cfap97	APN	8	46,623,179 (GRCm39)	missense	probably damaging	1.00
IGL02457:Cfap97	APN	8	46,623,315 (GRCm39)	missense	possibly damaging	0.63
R4289:Cfap97	UTSW	8	46,645,698 (GRCm39)	missense	probably benign	0.03
R4777:Cfap97	UTSW	8	46,648,334 (GRCm39)	nonsense	probably null
R4844:Cfap97	UTSW	8	46,622,712 (GRCm39)	missense	possibly damaging	0.85
R5369:Cfap97	UTSW	8	46,622,687 (GRCm39)	missense	probably damaging	1.00
R5914:Cfap97	UTSW	8	46,634,895 (GRCm39)	missense	probably damaging	0.97
R6227:Cfap97	UTSW	8	46,644,769 (GRCm39)	critical splice donor site	probably null
R6790:Cfap97	UTSW	8	46,623,113 (GRCm39)	missense	possibly damaging	0.81
R7409:Cfap97	UTSW	8	46,645,733 (GRCm39)	missense	probably benign	0.13
R7964:Cfap97	UTSW	8	46,623,237 (GRCm39)	missense	possibly damaging	0.85
R8077:Cfap97	UTSW	8	46,623,482 (GRCm39)	missense	possibly damaging	0.86
R8960:Cfap97	UTSW	8	46,623,605 (GRCm39)	missense	probably damaging	1.00
R8968:Cfap97	UTSW	8	46,623,114 (GRCm39)	missense	possibly damaging	0.86
R9186:Cfap97	UTSW	8	46,644,665 (GRCm39)	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- CGAAGTTCCTCAGTGTTGACTTC -3'
(R):5'- GAAGGCTGTGCACTTGATTTTC -3'

Sequencing Primer
(F):5'- CAGTGTTGACTTCTTCACGATC -3'
(R):5'- GTGCACTTGATTTTCTTCCTGAC -3'

Posted On

2016-10-26