Mutagenetix > Incidental Mutations

Incidental Mutation 'R5591:Zfp407'

437554

Institutional Source

Beutler Lab

Gene Symbol

Zfp407

Ensembl Gene

ENSMUSG00000048410

Gene Name

zinc finger protein 407

Synonyms

6430585N13Rik, LOC240469, LOC381139

MMRRC Submission

043269-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R5591 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

84128027-84589725 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 84561137 bp

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 617 (F617S)

Ref Sequence

ENSEMBL: ENSMUSP00000118361 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000125763]

Predicted Effect

probably benign
Transcript: ENSMUST00000125450

Predicted Effect

probably damaging
Transcript: ENSMUST00000125763
AA Change: F617S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000118361
Gene: ENSMUSG00000048410
AA Change: F617S

Domain	Start	End	E-Value	Type
low complexity region	20	37	N/A	INTRINSIC
ZnF_C2H2	178	200	8.67e-1	SMART
ZnF_U1	233	267	6.79e-1	SMART
ZnF_C2H2	236	260	4.65e-1	SMART
ZnF_C2H2	522	545	7.05e-1	SMART
ZnF_U1	548	582	1.54e1	SMART
ZnF_C2H2	551	575	1.01e-1	SMART
ZnF_C2H2	582	605	1.41e0	SMART
ZnF_U1	606	639	2.22e0	SMART
ZnF_C2H2	609	632	1.01e2	SMART
ZnF_C2H2	695	718	6.23e-2	SMART
ZnF_U1	721	755	2.96e0	SMART
ZnF_C2H2	724	748	7.11e0	SMART
ZnF_C2H2	840	863	7.55e-1	SMART
ZnF_U1	866	900	3.81e-1	SMART
ZnF_C2H2	869	893	1.07e0	SMART
ZnF_C2H2	1009	1032	6.13e-1	SMART
ZnF_U1	1035	1069	2.22e0	SMART
ZnF_C2H2	1038	1062	5.62e0	SMART
low complexity region	1223	1234	N/A	INTRINSIC
ZnF_C2H2	1405	1428	5.92e0	SMART
ZnF_U1	1432	1466	2.35e0	SMART
ZnF_C2H2	1435	1459	1.76e-1	SMART
ZnF_C2H2	1477	1500	5.42e-2	SMART
ZnF_C2H2	1528	1552	1.68e1	SMART
ZnF_C2H2	1558	1580	1.43e-1	SMART
ZnF_C2H2	1586	1609	9.58e-3	SMART
ZnF_C2H2	1619	1641	2.61e-4	SMART
ZnF_C2H2	1647	1671	1.04e-3	SMART
ZnF_C2H2	1677	1699	9.44e-2	SMART
ZnF_C2H2	1705	1727	1.82e-3	SMART
ZnF_C2H2	1733	1758	4.65e-1	SMART
ZnF_C2H2	1764	1787	1.26e-2	SMART
low complexity region	1876	1887	N/A	INTRINSIC
low complexity region	2017	2032	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156181

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000182297

Meta Mutation Damage Score

0.0996

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.6%
20x: 96.2%

Validation Efficiency

97% (56/58)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a zinc finger protein whose exact function is not known. It may be involved in transcriptional regulation. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2009]

Allele List at MGI

Other mutations in this stock

Total: 57 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aldh16a1	T	C	7: 45,144,652	E13G	probably null	Het
Ankrd39	C	T	1: 36,541,981	G96R	probably damaging	Het
Bub1	A	T	2: 127,819,343	M276K	probably benign	Het
Casp14	A	T	10: 78,714,345	D156E	unknown	Het
Ccdc82	T	A	9: 13,272,503		probably null	Het
Cdc42bpb	T	C	12: 111,323,087	N436S	probably benign	Het
Cyp2j12	A	G	4: 96,141,122		probably benign	Het
Cysltr2	T	C	14: 73,029,491	K260E	probably benign	Het
Daxx	T	C	17: 33,911,688	S226P	probably damaging	Het
Gm13101	G	T	4: 143,964,960	L398I	probably damaging	Het
Gm3676	T	C	14: 41,643,224	Y158C	probably benign	Het
Gm7102	C	T	19: 61,175,926	G24R	unknown	Het
Gnai1	A	T	5: 18,271,846	I285K	probably benign	Het
Gpr179	C	T	11: 97,345,755	V417I	probably benign	Het
Helz2	C	T	2: 181,240,258	M247I	probably damaging	Het
Hmcn2	C	T	2: 31,344,047	L275F	probably damaging	Het
Ifi27l2b	A	G	12: 103,451,307	V207A	probably damaging	Het
Isg20l2	C	T	3: 87,930,424		probably benign	Het
Itga6	A	G	2: 71,840,590	D221G	probably damaging	Het
Lca5l	T	C	16: 96,178,729	Y67C	probably damaging	Het
Loxl3	T	A	6: 83,048,037	C249S	probably damaging	Het
Luc7l3	T	C	11: 94,293,234		probably benign	Het
Lyst	T	G	13: 13,743,333	I3326S	probably damaging	Het
Mbd5	A	C	2: 49,274,669	Q958H	probably damaging	Het
Mlip	G	A	9: 77,230,482	S381L	probably damaging	Het
Mpp6	A	G	6: 50,180,179	S276G	probably benign	Het
Mrm3	G	A	11: 76,250,081	R305H	probably benign	Het
Olfr1261	A	G	2: 89,993,407	T5A	possibly damaging	Het
Olfr1328	A	T	4: 118,934,461	I127K	probably damaging	Het
Olfr170	T	A	16: 19,605,858	Q270L	probably damaging	Het
Olfr320	A	G	11: 58,684,125	N84S	probably benign	Het
Olfr347	A	T	2: 36,735,232	I304F	probably benign	Het
Olfr635	G	T	7: 103,980,113	R307L	probably benign	Het
Olfr709-ps1	A	T	7: 106,927,282	M59K	probably damaging	Het
P3h3	C	T	6: 124,854,695		probably benign	Het
Plekhg3	C	T	12: 76,560,292	S42L	possibly damaging	Het
Polq	A	G	16: 37,011,885		probably benign	Het
Pramef25	T	C	4: 143,948,807	Y483C	probably damaging	Het
Raph1	G	A	1: 60,501,746		probably benign	Het
Rnf144b	G	A	13: 47,242,954		probably null	Het
Ryr2	A	G	13: 11,595,014	S4309P	probably benign	Het
Sash1	A	T	10: 8,725,718	S1158T	probably benign	Het
Sim2	T	C	16: 94,097,189	V94A	probably damaging	Het
Sirt5	A	G	13: 43,371,841	D42G	possibly damaging	Het
Skiv2l2	A	T	13: 112,927,356	M1K	probably null	Het
Smarcal1	A	T	1: 72,591,253	K155N	probably damaging	Het
Spam1	A	G	6: 24,800,546	Y428C	probably damaging	Het
Spef2	T	C	15: 9,583,836	N1655S	probably benign	Het
Sympk	A	G	7: 19,054,039	E1160G	probably damaging	Het
Tmem192	A	G	8: 64,965,602	Y168C	possibly damaging	Het
Ttn	T	A	2: 76,709,668	M25998L	probably benign	Het
Usp48	A	G	4: 137,652,652		probably benign	Het
Vamp4	A	G	1: 162,588,242	I71V	possibly damaging	Het
Washc5	C	A	15: 59,369,163	D108Y	probably damaging	Het
Wdfy4	T	A	14: 33,107,130	H1043L	probably benign	Het
Zcchc14	C	T	8: 121,605,448		probably benign	Het
Zfp869	T	A	8: 69,707,692	N77I	probably benign	Het

Other mutations in Zfp407

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00499:Zfp407	APN	18	84561752	missense	probably damaging	0.99
IGL02105:Zfp407	APN	18	84562720	nonsense	probably null
IGL02110:Zfp407	APN	18	84559040	missense	probably benign	0.00
IGL02343:Zfp407	APN	18	84209724	missense	possibly damaging	0.71
IGL02456:Zfp407	APN	18	84558641	missense	probably damaging	1.00
IGL02705:Zfp407	APN	18	84559031	nonsense	probably null
IGL02946:Zfp407	APN	18	84560709	missense	probably damaging	1.00
IGL03069:Zfp407	APN	18	84350975	missense	probably damaging	1.00
IGL03145:Zfp407	APN	18	84209721	missense	probably damaging	0.99
IGL03403:Zfp407	APN	18	84560797	missense	probably damaging	1.00
IGL03134:Zfp407	UTSW	18	84209955	missense	probably damaging	0.99
PIT4362001:Zfp407	UTSW	18	84561268	missense	possibly damaging	0.87
PIT4520001:Zfp407	UTSW	18	84432420	missense	probably damaging	0.99
R0087:Zfp407	UTSW	18	84560411	missense	probably damaging	1.00
R0243:Zfp407	UTSW	18	84558711	missense	probably damaging	1.00
R0594:Zfp407	UTSW	18	84562567	missense	possibly damaging	0.87
R0766:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R0787:Zfp407	UTSW	18	84209022	missense	probably damaging	1.00
R0787:Zfp407	UTSW	18	84209346	missense	probably benign	0.00
R1065:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R1086:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R1165:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R1186:Zfp407	UTSW	18	84209448	missense	probably benign	0.39
R1203:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R1312:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R1345:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R1385:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R1421:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R1430:Zfp407	UTSW	18	84209455	missense	probably benign	0.18
R1436:Zfp407	UTSW	18	84343071	splice site	probably benign
R1498:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R1526:Zfp407	UTSW	18	84561033	missense	possibly damaging	0.61
R1579:Zfp407	UTSW	18	84209638	missense	probably benign	0.00
R1594:Zfp407	UTSW	18	84209331	missense	probably benign	0.01
R1628:Zfp407	UTSW	18	84354533	missense	probably damaging	1.00
R1698:Zfp407	UTSW	18	84562157	missense	probably damaging	1.00
R1962:Zfp407	UTSW	18	84559336	missense	probably benign	0.01
R1984:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R1985:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R1986:Zfp407	UTSW	18	84559773	missense	probably benign	0.14
R2151:Zfp407	UTSW	18	84209649	missense	possibly damaging	0.55
R2152:Zfp407	UTSW	18	84209649	missense	possibly damaging	0.55
R2154:Zfp407	UTSW	18	84209649	missense	possibly damaging	0.55
R2259:Zfp407	UTSW	18	84209793	missense	probably damaging	1.00
R2353:Zfp407	UTSW	18	84559880	missense	probably damaging	1.00
R2845:Zfp407	UTSW	18	84558397	nonsense	probably null
R3407:Zfp407	UTSW	18	84558872	missense	probably benign	0.08
R3432:Zfp407	UTSW	18	84208746	missense	probably damaging	1.00
R3892:Zfp407	UTSW	18	84560352	missense	probably damaging	1.00
R4026:Zfp407	UTSW	18	84559596	missense	possibly damaging	0.82
R4107:Zfp407	UTSW	18	84343007	missense	possibly damaging	0.82
R4398:Zfp407	UTSW	18	84562731	nonsense	probably null
R4447:Zfp407	UTSW	18	84562694	missense	possibly damaging	0.95
R4752:Zfp407	UTSW	18	84562914	missense	probably benign	0.01
R4881:Zfp407	UTSW	18	84559703	missense	probably benign	0.27
R4936:Zfp407	UTSW	18	84559464	missense	probably benign	0.00
R5194:Zfp407	UTSW	18	84561309	missense	probably benign	0.05
R5243:Zfp407	UTSW	18	84561091	missense	probably damaging	1.00
R5258:Zfp407	UTSW	18	84315926	missense	probably damaging	1.00
R5633:Zfp407	UTSW	18	84561044	missense	probably benign	0.35
R5739:Zfp407	UTSW	18	84208742	makesense	probably null
R5806:Zfp407	UTSW	18	84558614	missense	probably damaging	1.00
R5820:Zfp407	UTSW	18	84560524	missense	probably benign	0.01
R6187:Zfp407	UTSW	18	84559009	missense	possibly damaging	0.87
R6512:Zfp407	UTSW	18	84560349	missense	probably damaging	1.00
R6521:Zfp407	UTSW	18	84432411	missense	probably damaging	1.00
R6748:Zfp407	UTSW	18	84208830	missense	probably damaging	0.98
R6882:Zfp407	UTSW	18	84343069	splice site	probably null
R6899:Zfp407	UTSW	18	84561434	missense	possibly damaging	0.86
R7038:Zfp407	UTSW	18	84561857	missense	probably damaging	1.00
R7076:Zfp407	UTSW	18	84558476	missense	probably damaging	1.00
R7326:Zfp407	UTSW	18	84559042	missense	possibly damaging	0.77
R7397:Zfp407	UTSW	18	84561819	missense	possibly damaging	0.59
R7402:Zfp407	UTSW	18	84561536	missense	probably benign	0.02
R7783:Zfp407	UTSW	18	84209922	missense	possibly damaging	0.69
R7800:Zfp407	UTSW	18	84560675	missense	probably damaging	0.99
RF003:Zfp407	UTSW	18	84209563	missense	probably benign	0.17

Predicted Primers

PCR Primer
(F):5'- TGCGGCTTACTTGAATGCC -3'
(R):5'- TCCGTCAAGGAGAGACTTGG -3'

Sequencing Primer
(F):5'- ACTTGAATGCCGTGCTTCAG -3'
(R):5'- ACTTGGAGGAGCACGTGCAC -3'

Posted On

2016-10-26