Mutagenetix > Incidental Mutation

Incidental Mutation 'R5586:Dlgap1'

438776

Institutional Source

Beutler Lab

Gene Symbol

Dlgap1

Ensembl Gene

ENSMUSG00000003279

Gene Name

DLG associated protein 1

Synonyms

GKAP/SAPAP, 4933422O14Rik, SAPAP1, Gkap, Sapap1, D17Bwg0511e, DAP-1 beta

MMRRC Submission

043140-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5586 (G1)

Quality Score

163

Status

Validated

Chromosome

Chromosomal Location

69969073-70821413 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 70818161 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Aspartic acid at position 969 (V969D)

Ref Sequence

ENSEMBL: ENSMUSP00000122896 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000060072] [ENSMUST00000097288] [ENSMUST00000133717] [ENSMUST00000133983] [ENSMUST00000135938] [ENSMUST00000140728] [ENSMUST00000146730] [ENSMUST00000148486] [ENSMUST00000155016]

AlphaFold

Q9D415

Predicted Effect

probably damaging
Transcript: ENSMUST00000060072
AA Change: V959D

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000052858
Gene: ENSMUSG00000003279
AA Change: V959D

Domain	Start	End	E-Value	Type
low complexity region	180	210	N/A	INTRINSIC
low complexity region	515	539	N/A	INTRINSIC
low complexity region	542	559	N/A	INTRINSIC
low complexity region	628	642	N/A	INTRINSIC
Pfam:GKAP	643	982	6.8e-139	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000097288

SMART Domains

Protein: ENSMUSP00000094890
Gene: ENSMUSG00000003279

Domain	Start	End	E-Value	Type
low complexity region	208	228	N/A	INTRINSIC
low complexity region	244	261	N/A	INTRINSIC
low complexity region	330	344	N/A	INTRINSIC
Pfam:GKAP	345	625	9.4e-106	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000133717
AA Change: V643D

PolyPhen 2 Score 0.989 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000122370
Gene: ENSMUSG00000003279
AA Change: V643D

Domain	Start	End	E-Value	Type
low complexity region	218	238	N/A	INTRINSIC
low complexity region	312	326	N/A	INTRINSIC
Pfam:GKAP	327	666	1.3e-139	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000133983
AA Change: V959D

PolyPhen 2 Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000116716
Gene: ENSMUSG00000003279
AA Change: V959D

Domain	Start	End	E-Value	Type
low complexity region	180	210	N/A	INTRINSIC
low complexity region	515	539	N/A	INTRINSIC
low complexity region	542	559	N/A	INTRINSIC
low complexity region	628	642	N/A	INTRINSIC
Pfam:GKAP	643	982	6.8e-139	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000135938
AA Change: V941D

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000118497
Gene: ENSMUSG00000003279
AA Change: V941D

Domain	Start	End	E-Value	Type
low complexity region	180	210	N/A	INTRINSIC
low complexity region	516	536	N/A	INTRINSIC
low complexity region	610	624	N/A	INTRINSIC
Pfam:GKAP	625	964	9.3e-139	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000140728
AA Change: V669D

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000117358
Gene: ENSMUSG00000003279
AA Change: V669D

Domain	Start	End	E-Value	Type
low complexity region	216	236	N/A	INTRINSIC
low complexity region	252	269	N/A	INTRINSIC
low complexity region	338	352	N/A	INTRINSIC
Pfam:GKAP	353	692	1.4e-139	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000146730

SMART Domains

Protein: ENSMUSP00000116072
Gene: ENSMUSG00000003279

Domain	Start	End	E-Value	Type
low complexity region	180	210	N/A	INTRINSIC
low complexity region	516	536	N/A	INTRINSIC
low complexity region	552	569	N/A	INTRINSIC
low complexity region	638	652	N/A	INTRINSIC
Pfam:GKAP	653	933	9.5e-106	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000148486
AA Change: V659D

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000122337
Gene: ENSMUSG00000003279
AA Change: V659D

Domain	Start	End	E-Value	Type
low complexity region	215	239	N/A	INTRINSIC
low complexity region	242	259	N/A	INTRINSIC
low complexity region	328	342	N/A	INTRINSIC
Pfam:GKAP	343	682	1.3e-139	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000155016
AA Change: V969D

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000122896
Gene: ENSMUSG00000003279
AA Change: V969D

Domain	Start	End	E-Value	Type
low complexity region	180	210	N/A	INTRINSIC
low complexity region	516	536	N/A	INTRINSIC
low complexity region	552	569	N/A	INTRINSIC
low complexity region	638	652	N/A	INTRINSIC
Pfam:GKAP	660	992	2e-153	PFAM

Meta Mutation Damage Score

0.5452

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.6%
20x: 96.0%

Validation Efficiency

98% (101/103)

Allele List at MGI

Other mutations in this stock

Total: 92 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930432E11Rik	A	G	7: 29,577,728		noncoding transcript	Het
Aaas	A	T	15: 102,346,676		probably null	Het
Abcc3	G	A	11: 94,364,421	R600W	probably damaging	Het
Abhd13	A	T	8: 9,988,318	Q305L	probably benign	Het
Adcy5	A	T	16: 35,157,116	I340F	probably damaging	Het
Adgrl3	T	A	5: 81,724,147	I964N	probably damaging	Het
Anks1b	T	A	10: 90,077,064	H316Q	probably damaging	Het
Ap3d1	A	T	10: 80,719,130	F454I	possibly damaging	Het
Apol7c	T	C	15: 77,526,399	R116G	possibly damaging	Het
Arhgap5	A	G	12: 52,519,912	E1222G	possibly damaging	Het
AW551984	A	G	9: 39,591,263	V673A	probably benign	Het
Baiap2l1	A	G	5: 144,282,139	S220P	probably damaging	Het
Bcl6	A	G	16: 23,973,176	F143L	probably benign	Het
Calb1	A	T	4: 15,900,811	T165S	probably benign	Het
Ccdc66	C	A	14: 27,506,711	G6C	probably damaging	Het
Ccdc88a	A	G	11: 29,503,484	I344V	probably benign	Het
Cdh19	T	A	1: 110,929,857	D249V	probably damaging	Het
Ces1c	T	A	8: 93,127,599	T103S	probably benign	Het
Cfap54	T	A	10: 92,972,611	K1401*	probably null	Het
Copa	T	A	1: 172,105,222	N371K	probably damaging	Het
Cyp2b10	A	T	7: 25,917,012	Y348F	probably damaging	Het
Dennd5a	T	C	7: 109,905,721	R861G	possibly damaging	Het
Dhx8	T	C	11: 101,733,036		probably benign	Het
Dido1	C	T	2: 180,659,652	W2153*	probably null	Het
Dvl3	A	G	16: 20,517,289	D32G	probably damaging	Het
Epdr1	T	C	13: 19,594,548	D24G	probably benign	Het
Etnk2	T	A	1: 133,379,305		probably null	Het
Fam129a	C	T	1: 151,717,556	T664I	probably benign	Het
Fhad1	C	T	4: 141,905,131	M1232I	probably benign	Het
Gcnt2	A	C	13: 40,860,953	E200A	probably damaging	Het
Gm12800	T	A	4: 101,910,120	F189I	probably benign	Het
Gm5174	A	G	10: 86,656,545		noncoding transcript	Het
Gm6408	T	A	5: 146,484,457	F299I	possibly damaging	Het
Gpr85	G	T	6: 13,836,001	Y301*	probably null	Het
Gucy2e	G	T	11: 69,226,256	P780T	probably damaging	Het
Icam5	A	T	9: 21,034,820	N316I	probably damaging	Het
Ifit1bl1	C	T	19: 34,594,277	R260Q	probably damaging	Het
Il1r1	A	C	1: 40,225,251		probably benign	Het
Kif3c	A	T	12: 3,389,656	I86F	probably benign	Het
Klhdc2	A	G	12: 69,307,693		probably null	Het
Mast2	A	G	4: 116,435,563	L9P	probably damaging	Het
Mcoln1	G	T	8: 3,510,389	C316F	probably damaging	Het
Mon1a	A	T	9: 107,898,695	D4V	probably damaging	Het
Ms4a18	T	A	19: 11,013,674	M19L	probably benign	Het
Nbea	T	C	3: 55,631,971	K2790E	probably benign	Het
Noc3l	C	T	19: 38,814,695	E167K	possibly damaging	Het
Nol10	G	A	12: 17,416,828	E570K	possibly damaging	Het
Nr2e3	T	C	9: 59,949,201	R69G	probably damaging	Het
Obscn	G	A	11: 59,001,468	R1358*	probably null	Het
Olfr115	A	T	17: 37,610,254	F166I	probably damaging	Het
Olfr1472	A	T	19: 13,454,382	M45K	probably benign	Het
Olfr1535	C	A	13: 21,555,096	V309F	probably damaging	Het
Olfr675	A	G	7: 105,024,221	I253T	probably damaging	Het
Pak2	A	T	16: 32,041,519	D175E	probably benign	Het
Pccb	C	T	9: 100,985,803	V357I	possibly damaging	Het
Pcdhb4	C	T	18: 37,308,981	P448L	probably damaging	Het
Pcdhb9	A	G	18: 37,401,114	M54V	probably benign	Het
Ppp3cb	A	G	14: 20,520,690		probably benign	Het
Ppp4r1	A	G	17: 65,824,568	D452G	probably benign	Het
Prmt3	T	A	7: 49,826,751	D369E	probably damaging	Het
Psmd12	T	A	11: 107,486,475	V120D	probably benign	Het
Ptprb	T	C	10: 116,353,827	L1797P	probably damaging	Het
Ptprm	A	G	17: 66,920,196	S653P	probably damaging	Het
Pxdn	T	A	12: 30,003,142	V926D	probably damaging	Het
Retreg3	T	G	11: 101,106,339	Q105P	probably damaging	Het
Sacs	A	T	14: 61,206,441	R1979*	probably null	Het
Scn2a	T	A	2: 65,707,295	L696*	probably null	Het
Sema3c	A	T	5: 17,711,424	N465Y	probably damaging	Het
Slc25a32	A	T	15: 39,099,913	V171E	possibly damaging	Het
Slc30a7	C	T	3: 115,990,051	V158I	probably benign	Het
Slc44a5	G	A	3: 154,270,165		probably benign	Het
Slc4a8	A	G	15: 100,787,164	D140G	probably damaging	Het
Slc7a11	G	A	3: 50,443,083	S60L	possibly damaging	Het
Spryd3	A	T	15: 102,131,937	H59Q	probably benign	Het
Sqstm1	T	C	11: 50,203,022	D256G	probably damaging	Het
Sst	A	T	16: 23,889,737	S115T	probably damaging	Het
Surf1	T	C	2: 26,915,951		probably benign	Het
Synj1	A	T	16: 91,009,977		probably benign	Het
Tet1	C	A	10: 62,878,294	C574F	probably damaging	Het
Thnsl1	T	A	2: 21,212,390	Y318*	probably null	Het
Tmem110	A	G	14: 30,870,819	K166E	probably damaging	Het
Tomm70a	A	G	16: 57,122,130	E90G	probably damaging	Het
Treml4	A	G	17: 48,264,899	D110G	probably damaging	Het
Ttn	A	T	2: 76,811,243	L5176Q	possibly damaging	Het
Txnl1	C	T	18: 63,664,325	G283D	probably damaging	Het
Uba6	T	C	5: 86,135,047	D559G	probably damaging	Het
Usp4	T	C	9: 108,356,462	V94A	possibly damaging	Het
Vmn2r25	A	C	6: 123,825,296	C549W	probably damaging	Het
Vmn2r59	G	T	7: 42,045,681	Q436K	probably benign	Het
Wdr70	A	T	15: 7,884,288	Y627N	possibly damaging	Het
Xpr1	T	C	1: 155,312,863	I344V	probably benign	Het
Zfp423	T	A	8: 87,859,340	Q61L	possibly damaging	Het

Other mutations in Dlgap1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00162:Dlgap1	APN	17	70516085	missense	probably benign	0.02
IGL01413:Dlgap1	APN	17	70516074	missense	probably benign	0.00
IGL01531:Dlgap1	APN	17	70516379	missense	probably damaging	1.00
IGL02226:Dlgap1	APN	17	70516034	missense	probably damaging	1.00
BB009:Dlgap1	UTSW	17	70516238	missense	probably damaging	1.00
BB019:Dlgap1	UTSW	17	70516238	missense	probably damaging	1.00
R0453:Dlgap1	UTSW	17	70761346	missense	probably benign	0.03
R0482:Dlgap1	UTSW	17	70516190	missense	probably benign	0.11
R0520:Dlgap1	UTSW	17	70516994	nonsense	probably null
R1951:Dlgap1	UTSW	17	70761311	missense	probably damaging	0.96
R2072:Dlgap1	UTSW	17	70662770	missense	probably damaging	0.99
R2076:Dlgap1	UTSW	17	70786831	nonsense	probably null
R3438:Dlgap1	UTSW	17	70516361	missense	probably damaging	0.97
R3743:Dlgap1	UTSW	17	70718226	critical splice donor site	probably null
R3881:Dlgap1	UTSW	17	70786815	missense	probably damaging	1.00
R3981:Dlgap1	UTSW	17	70516785	missense	probably damaging	1.00
R4043:Dlgap1	UTSW	17	70761080	missense	probably damaging	1.00
R4272:Dlgap1	UTSW	17	70766043	missense	probably benign
R4273:Dlgap1	UTSW	17	70766043	missense	probably benign
R4557:Dlgap1	UTSW	17	70516689	missense	probably benign	0.01
R4652:Dlgap1	UTSW	17	70761095	missense	probably damaging	1.00
R4771:Dlgap1	UTSW	17	70593380	nonsense	probably null
R5000:Dlgap1	UTSW	17	70766058	missense	probably damaging	1.00
R5004:Dlgap1	UTSW	17	70718227	critical splice donor site	probably null
R5291:Dlgap1	UTSW	17	70718210	missense	probably benign	0.03
R5304:Dlgap1	UTSW	17	70815207	missense	probably damaging	1.00
R5473:Dlgap1	UTSW	17	70517030	intron	probably benign
R5522:Dlgap1	UTSW	17	70516998	critical splice donor site	probably null
R5742:Dlgap1	UTSW	17	70718199	missense	probably benign
R5802:Dlgap1	UTSW	17	70766091	critical splice donor site	probably null
R5850:Dlgap1	UTSW	17	70787092	missense	probably damaging	1.00
R5857:Dlgap1	UTSW	17	70815393	intron	probably benign
R5883:Dlgap1	UTSW	17	70517013	intron	probably benign
R6045:Dlgap1	UTSW	17	70818098	missense	probably damaging	1.00
R6336:Dlgap1	UTSW	17	70815289	missense	probably damaging	1.00
R6448:Dlgap1	UTSW	17	70593330	missense	possibly damaging	0.59
R6682:Dlgap1	UTSW	17	70787123	missense	probably damaging	1.00
R6795:Dlgap1	UTSW	17	70818074	missense	possibly damaging	0.48
R7147:Dlgap1	UTSW	17	70662758	missense	probably benign	0.00
R7187:Dlgap1	UTSW	17	70516098	missense	possibly damaging	0.93
R7382:Dlgap1	UTSW	17	70787174	missense	probably damaging	1.00
R7859:Dlgap1	UTSW	17	70516688	missense	probably benign
R7932:Dlgap1	UTSW	17	70516238	missense	probably damaging	1.00
R8477:Dlgap1	UTSW	17	70516972	missense	probably damaging	1.00
R8673:Dlgap1	UTSW	17	70815298	missense	probably damaging	1.00
R8866:Dlgap1	UTSW	17	70516440	missense	probably damaging	1.00
R8910:Dlgap1	UTSW	17	70786820	missense	probably damaging	1.00
R8997:Dlgap1	UTSW	17	70516533	missense	possibly damaging	0.63
R9012:Dlgap1	UTSW	17	70516187	missense	possibly damaging	0.94
R9035:Dlgap1	UTSW	17	70516860	missense	possibly damaging	0.73
R9067:Dlgap1	UTSW	17	70809191	missense	probably damaging	1.00
R9361:Dlgap1	UTSW	17	70761264	missense	probably damaging	1.00
R9464:Dlgap1	UTSW	17	70516969	missense	probably benign	0.11
R9550:Dlgap1	UTSW	17	70786907	missense	possibly damaging	0.61
R9564:Dlgap1	UTSW	17	70657463	missense	probably benign	0.02
R9565:Dlgap1	UTSW	17	70657463	missense	probably benign	0.02
T0975:Dlgap1	UTSW	17	70516955	missense	possibly damaging	0.86
Z1176:Dlgap1	UTSW	17	70815209	missense	probably damaging	1.00
Z1177:Dlgap1	UTSW	17	70662743	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TGTGTAATGTCCTGAACCTTCTG -3'
(R):5'- TCTGCATGAGGCTTCAGGAC -3'

Sequencing Primer
(F):5'- GAACCTTCTGCTTTGATCAGGAGC -3'
(R):5'- TCCTGCGAGGTGGACAACTAC -3'

Posted On

2016-10-26