Mutagenetix > Incidental Mutation

Incidental Mutation 'R5604:Hnf4g'

439163

Institutional Source

Beutler Lab

Gene Symbol

Hnf4g

Ensembl Gene

ENSMUSG00000017688

Gene Name

hepatocyte nuclear factor 4, gamma

Synonyms

NR2A2

MMRRC Submission

043156-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.200) question?

Stock #

R5604 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

3573090-3724863 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 3722186 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 447 (Q447*)

Ref Sequence

ENSEMBL: ENSMUSP00000104031 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000108393] [ENSMUST00000108394]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000108393
AA Change: Q403*

SMART Domains

Protein: ENSMUSP00000104030
Gene: ENSMUSG00000017688
AA Change: Q403*

Domain	Start	End	E-Value	Type
ZnF_C4	9	80	6.51e-35	SMART
low complexity region	118	125	N/A	INTRINSIC
HOLI	141	299	7.29e-47	SMART
low complexity region	334	345	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000108394
AA Change: Q447*

SMART Domains

Protein: ENSMUSP00000104031
Gene: ENSMUSG00000017688
AA Change: Q447*

Domain	Start	End	E-Value	Type
ZnF_C4	63	134	6.51e-35	SMART
low complexity region	172	179	N/A	INTRINSIC
HOLI	195	353	7.29e-47	SMART
low complexity region	388	399	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.6%
20x: 96.3%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele are less inclined to build nests, spend more time in a passive state during the forced swim test, and display a reduction in energy expenditure and night time activity that results in increased body weight despite adecreased intake of food and water. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310034C09Rik	A	T	16: 88,556,278 (GRCm39)	N164I	possibly damaging	Het
4933402J07Rik	C	A	8: 88,295,125 (GRCm39)	R88S	possibly damaging	Het
Abca1	A	T	4: 53,067,168 (GRCm39)		probably null	Het
Abca13	T	A	11: 9,516,279 (GRCm39)	I4406K	probably damaging	Het
Adam6b	T	A	12: 113,454,420 (GRCm39)	Y412*	probably null	Het
Ahcyl2	C	T	6: 29,908,366 (GRCm39)	H370Y	probably damaging	Het
Ahi1	A	G	10: 20,862,904 (GRCm39)	Y693C	probably damaging	Het
Anapc4	T	A	5: 52,999,076 (GRCm39)	Y129*	probably null	Het
Ankrd35	A	G	3: 96,592,215 (GRCm39)	T834A	probably benign	Het
Antxr2	T	C	5: 98,096,169 (GRCm39)	K372E	probably damaging	Het
Arhgef1	C	T	7: 24,612,210 (GRCm39)	H198Y	probably benign	Het
Barhl2	T	C	5: 106,603,412 (GRCm39)	E249G	probably benign	Het
C2cd5	T	C	6: 142,957,747 (GRCm39)	E987G	probably benign	Het
C87436	T	C	6: 86,424,337 (GRCm39)	S290P	probably benign	Het
Ccser1	C	T	6: 61,290,788 (GRCm39)	T490M	probably damaging	Het
Cd8b1	T	C	6: 71,303,159 (GRCm39)	V78A	probably benign	Het
Cdc25c	A	G	18: 34,866,701 (GRCm39)	Y374H	probably damaging	Het
Cmya5	C	T	13: 93,229,271 (GRCm39)	R1939H	probably benign	Het
Cyp2d40	A	G	15: 82,648,256 (GRCm39)	F19S	probably damaging	Het
Dll3	A	G	7: 27,994,057 (GRCm39)	V460A	probably benign	Het
Dnajb12	GC	G	10: 59,728,574 (GRCm39)		probably null	Het
E4f1	A	G	17: 24,663,118 (GRCm39)	I729T	probably damaging	Het
Endou	A	C	15: 97,618,800 (GRCm39)	S75A	probably benign	Het
Epas1	C	T	17: 87,113,200 (GRCm39)	H129Y	probably damaging	Het
Grm1	T	A	10: 10,622,479 (GRCm39)	N415Y	probably damaging	Het
Hdc	A	T	2: 126,436,583 (GRCm39)	S429R	probably benign	Het
Htr6	C	T	4: 138,788,814 (GRCm39)	A414T	probably benign	Het
Insig1	T	C	5: 28,280,080 (GRCm39)	L224P	probably damaging	Het
Ipo9	G	A	1: 135,329,983 (GRCm39)	L486F	probably damaging	Het
Irak2	T	A	6: 113,667,792 (GRCm39)	S458T	possibly damaging	Het
Irs2	A	G	8: 11,055,007 (GRCm39)	S1142P	possibly damaging	Het
Kirrel1	T	A	3: 86,996,462 (GRCm39)	N379I	possibly damaging	Het
L3mbtl4	T	A	17: 69,084,917 (GRCm39)	D609E	probably benign	Het
Lama3	A	G	18: 12,572,405 (GRCm39)	T537A	probably benign	Het
Lce1i	A	T	3: 92,685,056 (GRCm39)	V40E	unknown	Het
Mprip	T	A	11: 59,649,293 (GRCm39)	V999D	probably benign	Het
Myd88	G	T	9: 119,168,829 (GRCm39)	T85K	possibly damaging	Het
Or1e35	T	A	11: 73,797,853 (GRCm39)	H155L	probably benign	Het
Padi6	A	T	4: 140,458,473 (GRCm39)	M473K	probably damaging	Het
Pcdh12	T	A	18: 38,401,935 (GRCm39)	S97C	probably damaging	Het
Pkd1l1	T	A	11: 8,783,877 (GRCm39)	D2026V	probably damaging	Het
Plcxd1	T	C	5: 110,250,451 (GRCm39)	V264A	probably benign	Het
Plekha4	T	C	7: 45,198,580 (GRCm39)	S558P	probably damaging	Het
Ppm1a	T	A	12: 72,837,455 (GRCm39)	M334K	probably benign	Het
Ppp1r13l	T	C	7: 19,109,524 (GRCm39)	S684P	possibly damaging	Het
Prdm4	TCTCCTCCT	TCTCCT	10: 85,728,987 (GRCm39)		probably null	Het
Prl2a1	T	C	13: 27,990,369 (GRCm39)		probably benign	Het
Ptch1	T	C	13: 63,672,936 (GRCm39)	K753E	probably benign	Het
Qrich1	A	G	9: 108,436,502 (GRCm39)		probably benign	Het
Ror2	G	A	13: 53,271,201 (GRCm39)	R373C	probably benign	Het
Rtn4	C	A	11: 29,658,140 (GRCm39)	L765I	probably damaging	Het
Sema3a	T	C	5: 13,523,487 (GRCm39)		probably null	Het
Setd2	T	A	9: 110,433,284 (GRCm39)	D62E	probably damaging	Het
Ss18	A	T	18: 14,769,577 (GRCm39)	Y327N	unknown	Het
Ticam1	G	A	17: 56,578,756 (GRCm39)	T113I	probably benign	Het
Tnrc6a	A	G	7: 122,773,459 (GRCm39)	I1134V	probably damaging	Het
Top3b	T	G	16: 16,707,399 (GRCm39)	Y526*	probably null	Het
Tph2	T	C	10: 114,926,614 (GRCm39)	E384G	probably damaging	Het
Ttll11	A	T	2: 35,707,798 (GRCm39)	I503N	probably benign	Het
Zfp87	T	G	13: 67,665,945 (GRCm39)	K172N	probably damaging	Het

Other mutations in Hnf4g

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00089:Hnf4g	APN	3	3,713,142 (GRCm39)	missense	probably benign
IGL00832:Hnf4g	APN	3	3,706,336 (GRCm39)	missense	probably damaging	1.00
IGL01571:Hnf4g	APN	3	3,716,326 (GRCm39)	splice site	probably benign
IGL01896:Hnf4g	APN	3	3,716,470 (GRCm39)	missense	probably damaging	1.00
IGL02068:Hnf4g	APN	3	3,709,636 (GRCm39)	missense	probably benign
IGL03040:Hnf4g	APN	3	3,699,271 (GRCm39)	utr 5 prime	probably benign
IGL03097:Hnf4g	UTSW	3	3,716,674 (GRCm39)	missense	probably damaging	1.00
R0124:Hnf4g	UTSW	3	3,708,142 (GRCm39)	splice site	probably benign
R0477:Hnf4g	UTSW	3	3,716,851 (GRCm39)	splice site	probably benign
R0512:Hnf4g	UTSW	3	3,716,682 (GRCm39)	missense	probably damaging	1.00
R0744:Hnf4g	UTSW	3	3,716,689 (GRCm39)	missense	possibly damaging	0.92
R1323:Hnf4g	UTSW	3	3,699,281 (GRCm39)	missense	possibly damaging	0.73
R1323:Hnf4g	UTSW	3	3,699,281 (GRCm39)	missense	possibly damaging	0.73
R1656:Hnf4g	UTSW	3	3,718,011 (GRCm39)	missense	probably benign
R1982:Hnf4g	UTSW	3	3,703,268 (GRCm39)	missense	probably damaging	0.99
R2336:Hnf4g	UTSW	3	3,706,284 (GRCm39)	missense	probably benign	0.25
R3104:Hnf4g	UTSW	3	3,717,916 (GRCm39)	missense	probably benign	0.42
R3105:Hnf4g	UTSW	3	3,717,916 (GRCm39)	missense	probably benign	0.42
R3106:Hnf4g	UTSW	3	3,717,916 (GRCm39)	missense	probably benign	0.42
R3843:Hnf4g	UTSW	3	3,716,362 (GRCm39)	missense	probably benign	0.09
R4200:Hnf4g	UTSW	3	3,716,344 (GRCm39)	missense	possibly damaging	0.94
R4248:Hnf4g	UTSW	3	3,717,909 (GRCm39)	missense	possibly damaging	0.69
R4418:Hnf4g	UTSW	3	3,713,154 (GRCm39)	missense	possibly damaging	0.66
R4756:Hnf4g	UTSW	3	3,708,069 (GRCm39)	missense	possibly damaging	0.69
R4871:Hnf4g	UTSW	3	3,716,448 (GRCm39)	missense	possibly damaging	0.94
R5022:Hnf4g	UTSW	3	3,709,647 (GRCm39)	missense	probably damaging	0.99
R5023:Hnf4g	UTSW	3	3,709,647 (GRCm39)	missense	probably damaging	0.99
R5088:Hnf4g	UTSW	3	3,722,181 (GRCm39)	missense	probably benign	0.09
R6746:Hnf4g	UTSW	3	3,722,170 (GRCm39)	nonsense	probably null
R7088:Hnf4g	UTSW	3	3,713,185 (GRCm39)	splice site	probably null
R7335:Hnf4g	UTSW	3	3,717,924 (GRCm39)	missense	possibly damaging	0.93
R8153:Hnf4g	UTSW	3	3,699,250 (GRCm39)	start gained	probably benign
R8182:Hnf4g	UTSW	3	3,716,679 (GRCm39)	missense	possibly damaging	0.82
R8676:Hnf4g	UTSW	3	3,708,133 (GRCm39)	splice site	probably benign
R9008:Hnf4g	UTSW	3	3,708,096 (GRCm39)	missense	probably benign
R9153:Hnf4g	UTSW	3	3,573,378 (GRCm39)	start gained	probably benign
R9671:Hnf4g	UTSW	3	3,703,273 (GRCm39)	missense	probably benign	0.00
R9802:Hnf4g	UTSW	3	3,699,404 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GGTGAGAATGCTCTGCCATTAGC -3'
(R):5'- CAGGATAGAATCTTATAACAGCACC -3'

Sequencing Primer
(F):5'- GCCATTAGCATGCCAAAGG -3'
(R):5'- CCATGAAGAAGCCTTGCCTG -3'

Posted On

2016-10-26