Mutagenetix > Incidental Mutation

Incidental Mutation 'R5605:Nfyc'

439238

Institutional Source

Beutler Lab

Gene Symbol

Nfyc

Ensembl Gene

ENSMUSG00000032897

Gene Name

nuclear transcription factor-Y gamma

Synonyms

MMRRC Submission

043270-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.971) question?

Stock #

R5605 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

120614635-120688769 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 120647686 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000114591 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000043429] [ENSMUST00000097906] [ENSMUST00000118902] [ENSMUST00000120779] [ENSMUST00000134979] [ENSMUST00000136236] [ENSMUST00000145658]

AlphaFold

P70353

Predicted Effect

probably benign
Transcript: ENSMUST00000043429

SMART Domains

Protein: ENSMUSP00000047441
Gene: ENSMUSG00000032897

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
Pfam:Histone	36	107	2.5e-13	PFAM
Pfam:CBFD_NFYB_HMF	41	105	4.5e-23	PFAM
low complexity region	150	190	N/A	INTRINSIC
low complexity region	193	231	N/A	INTRINSIC
low complexity region	275	297	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000097906

SMART Domains

Protein: ENSMUSP00000095516
Gene: ENSMUSG00000032897

Domain	Start	End	E-Value	Type
Pfam:Histone	9	107	7.2e-17	PFAM
Pfam:CBFD_NFYB_HMF	41	105	7.8e-23	PFAM
low complexity region	150	190	N/A	INTRINSIC
low complexity region	193	231	N/A	INTRINSIC
low complexity region	275	297	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000118902

SMART Domains

Protein: ENSMUSP00000112610
Gene: ENSMUSG00000032897

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
Pfam:Histone	36	107	2.5e-13	PFAM
Pfam:CBFD_NFYB_HMF	41	105	4.5e-23	PFAM
low complexity region	150	190	N/A	INTRINSIC
low complexity region	193	231	N/A	INTRINSIC
low complexity region	275	297	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000120779

SMART Domains

Protein: ENSMUSP00000112810
Gene: ENSMUSG00000032897

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
Pfam:Histone	36	107	2.5e-13	PFAM
Pfam:CBFD_NFYB_HMF	41	105	4.5e-23	PFAM
low complexity region	150	190	N/A	INTRINSIC
low complexity region	193	231	N/A	INTRINSIC
low complexity region	275	297	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000134979

SMART Domains

Protein: ENSMUSP00000114640
Gene: ENSMUSG00000032897

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
PDB:1N1J\|B	23	58	8e-9	PDB
low complexity region	88	128	N/A	INTRINSIC
low complexity region	132	163	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000136236

SMART Domains

Protein: ENSMUSP00000117646
Gene: ENSMUSG00000032897

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
Pfam:CBFD_NFYB_HMF	41	70	5.1e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000145658

SMART Domains

Protein: ENSMUSP00000114591
Gene: ENSMUSG00000032897

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
SCOP:d1b67a_	25	53	3e-3	SMART

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.5%
20x: 95.9%

Validation Efficiency

100% (55/55)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes one subunit of a trimeric complex forming a highly conserved transcription factor that binds with high specificity to CCAAT motifs in the promoters of a variety of genes. The encoded protein, subunit C, forms a tight dimer with the B subunit, a prerequisite for subunit A association. The resulting trimer binds to DNA with high specificity and affinity. Subunits B and C each contain a histone-like motif. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2008]

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Afg3l2	C	A	18: 67,575,425 (GRCm39)	G83*	probably null	Het
Arap2	A	T	5: 62,772,410 (GRCm39)	M1476K	possibly damaging	Het
Catsper2	G	A	2: 121,227,533 (GRCm39)	R546C	possibly damaging	Het
Ceacam5	T	C	7: 17,481,161 (GRCm39)	F303L	probably benign	Het
Clvs1	A	G	4: 9,281,751 (GRCm39)	D65G	probably damaging	Het
Coq5	T	C	5: 115,421,776 (GRCm39)		probably null	Het
D630045J12Rik	A	T	6: 38,168,699 (GRCm39)	V950E	probably damaging	Het
Dennd4b	G	A	3: 90,175,675 (GRCm39)	R148Q	probably damaging	Het
Dnah7c	A	G	1: 46,837,395 (GRCm39)	D3936G	possibly damaging	Het
Doc2b	T	C	11: 75,662,786 (GRCm39)	E404G	probably damaging	Het
Dsg1b	C	T	18: 20,532,596 (GRCm39)	P547S	probably benign	Het
Eif1ad17	T	A	12: 87,978,768 (GRCm39)	C51S	probably damaging	Het
Erich6	A	G	3: 58,532,540 (GRCm39)	Y356H	probably damaging	Het
Galnt6	C	T	15: 100,595,106 (GRCm39)	R465Q	probably damaging	Het
Gbp5	T	C	3: 142,207,037 (GRCm39)	S69P	probably damaging	Het
Gdpd4	T	C	7: 97,655,507 (GRCm39)	V562A	probably benign	Het
Greb1	A	T	12: 16,758,727 (GRCm39)	V663D	probably damaging	Het
Gtf3c3	A	T	1: 54,455,085 (GRCm39)	S593T	probably benign	Het
H2-Eb1	T	C	17: 34,528,807 (GRCm39)	S113P	probably benign	Het
Herc3	C	T	6: 58,834,712 (GRCm39)	R240C	probably damaging	Het
Iqub	T	C	6: 24,505,620 (GRCm39)	D96G	probably benign	Het
Irag1	C	T	7: 110,545,209 (GRCm39)	C29Y	possibly damaging	Het
Kcnt2	A	T	1: 140,502,481 (GRCm39)	E858D	possibly damaging	Het
Lcor	T	A	19: 41,571,302 (GRCm39)	I165N	probably damaging	Het
Lrp2	C	T	2: 69,353,643 (GRCm39)	R539K	probably damaging	Het
Lrrc10	C	A	10: 116,881,805 (GRCm39)	P160T	probably damaging	Het
Map3k12	G	T	15: 102,412,300 (GRCm39)	D280E	probably benign	Het
Mcub	T	C	3: 129,710,658 (GRCm39)	E258G	probably damaging	Het
Mdn1	T	C	4: 32,765,664 (GRCm39)	S5208P	probably benign	Het
Med20	C	A	17: 47,934,069 (GRCm39)		probably benign	Het
Mertk	T	C	2: 128,580,227 (GRCm39)	V227A	probably benign	Het
Ncstn	A	G	1: 171,908,717 (GRCm39)		probably benign	Het
Nedd4l	T	C	18: 65,307,315 (GRCm39)		probably null	Het
Npdc1	G	A	2: 25,298,957 (GRCm39)	D284N	probably damaging	Het
Nt5dc1	C	T	10: 34,279,691 (GRCm39)	C117Y	probably benign	Het
Nup88	A	T	11: 70,834,896 (GRCm39)		probably benign	Het
Or6z7	C	T	7: 6,483,325 (GRCm39)	V277M	probably benign	Het
Pbrm1	T	A	14: 30,757,949 (GRCm39)	I193K	probably benign	Het
Pcsk2	T	C	2: 143,591,165 (GRCm39)		probably benign	Het
Pdzd2	A	T	15: 12,592,436 (GRCm39)	C69*	probably null	Het
Polr1e	A	G	4: 45,018,723 (GRCm39)	T18A	probably benign	Het
Prima1	T	A	12: 103,166,163 (GRCm39)	I124F	probably benign	Het
Rbm34	T	C	8: 127,676,169 (GRCm39)	K382R	probably benign	Het
Rftn1	T	G	17: 50,354,435 (GRCm39)	N309T	probably damaging	Het
Septin1	C	T	7: 126,814,598 (GRCm39)	D260N	probably damaging	Het
Serpina3g	T	C	12: 104,207,299 (GRCm39)	V154A	probably damaging	Het
Spef2	A	T	15: 9,609,606 (GRCm39)	N1306K	probably damaging	Het
Stk4	T	C	2: 163,921,486 (GRCm39)	F29S	probably damaging	Het
Stxbp5	A	G	10: 9,645,490 (GRCm39)		probably benign	Het
Tbl3	T	C	17: 24,919,733 (GRCm39)	T774A	probably benign	Het
Tinag	A	G	9: 76,952,694 (GRCm39)	Y97H	probably damaging	Het
Tpm1	T	C	9: 66,956,317 (GRCm39)	E33G	probably damaging	Het
Usp17lb	T	C	7: 104,489,847 (GRCm39)	E359G	probably benign	Het
Vmn2r91	A	G	17: 18,356,763 (GRCm39)	E810G	probably damaging	Het
Vwce	A	T	19: 10,635,402 (GRCm39)	T633S	possibly damaging	Het
Ylpm1	G	A	12: 85,075,627 (GRCm39)	R326H	probably damaging	Het

Other mutations in Nfyc

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00837:Nfyc	APN	4	120,638,744 (GRCm39)	intron	probably benign
IGL01522:Nfyc	APN	4	120,638,721 (GRCm39)	missense	probably damaging	1.00
IGL01673:Nfyc	APN	4	120,636,307 (GRCm39)	unclassified	probably benign
IGL03197:Nfyc	APN	4	120,630,958 (GRCm39)	missense	probably damaging	1.00
PIT4378001:Nfyc	UTSW	4	120,647,688 (GRCm39)	critical splice acceptor site	probably null
R0638:Nfyc	UTSW	4	120,626,081 (GRCm39)	missense	probably benign	0.19
R0725:Nfyc	UTSW	4	120,625,931 (GRCm39)	unclassified	probably benign
R0842:Nfyc	UTSW	4	120,616,574 (GRCm39)	missense	probably benign	0.16
R1480:Nfyc	UTSW	4	120,625,921 (GRCm39)	critical splice donor site	probably null
R1535:Nfyc	UTSW	4	120,618,921 (GRCm39)	missense	probably damaging	0.99
R1940:Nfyc	UTSW	4	120,630,861 (GRCm39)	splice site	probably benign
R3753:Nfyc	UTSW	4	120,622,527 (GRCm39)	unclassified	probably benign
R6047:Nfyc	UTSW	4	120,636,314 (GRCm39)	splice site	probably null
R7545:Nfyc	UTSW	4	120,630,966 (GRCm39)	critical splice acceptor site	probably null
R8479:Nfyc	UTSW	4	120,626,089 (GRCm39)	missense	probably damaging	0.97
Z1176:Nfyc	UTSW	4	120,647,684 (GRCm39)	splice site	probably benign
Z1177:Nfyc	UTSW	4	120,647,663 (GRCm39)	missense	unknown

Predicted Primers

Posted On

2016-10-26