Incidental Mutation 'R5606:Plch1'
ID 439284
Institutional Source Beutler Lab
Gene Symbol Plch1
Ensembl Gene ENSMUSG00000036834
Gene Name phospholipase C, eta 1
Synonyms Plcl3, PLCeta1
MMRRC Submission 043157-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.198) question?
Stock # R5606 (G1)
Quality Score 225
Status Not validated
Chromosome 3
Chromosomal Location 63603655-63806893 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 63648108 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Glutamic Acid at position 421 (V421E)
Ref Sequence ENSEMBL: ENSMUSP00000135353 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000048134] [ENSMUST00000059973] [ENSMUST00000084105] [ENSMUST00000159676] [ENSMUST00000160638] [ENSMUST00000162269] [ENSMUST00000175947] [ENSMUST00000177143]
AlphaFold Q4KWH5
Predicted Effect probably benign
Transcript: ENSMUST00000048134
AA Change: V403E

PolyPhen 2 Score 0.084 (Sensitivity: 0.93; Specificity: 0.85)
SMART Domains Protein: ENSMUSP00000047693
Gene: ENSMUSG00000036834
AA Change: V403E

DomainStartEndE-ValueType
PH 3 112 2.37e-6 SMART
EFh 128 156 2.41e-4 SMART
EFh 164 193 1.54e-2 SMART
Pfam:EF-hand_like 198 280 2.2e-26 PFAM
PLCXc 281 426 3.13e-71 SMART
low complexity region 440 453 N/A INTRINSIC
low complexity region 564 581 N/A INTRINSIC
PLCYc 583 696 3.4e-49 SMART
C2 715 823 5.47e-22 SMART
low complexity region 979 997 N/A INTRINSIC
low complexity region 1079 1091 N/A INTRINSIC
low complexity region 1420 1435 N/A INTRINSIC
low complexity region 1543 1557 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000059973
AA Change: V421E

PolyPhen 2 Score 0.084 (Sensitivity: 0.93; Specificity: 0.85)
SMART Domains Protein: ENSMUSP00000058524
Gene: ENSMUSG00000036834
AA Change: V421E

DomainStartEndE-ValueType
PH 21 130 1.1e-8 SMART
EFh 146 174 1.1e-6 SMART
EFh 182 211 7.6e-5 SMART
Pfam:EF-hand_like 216 298 4.5e-24 PFAM
PLCXc 299 444 1.6e-73 SMART
low complexity region 458 471 N/A INTRINSIC
low complexity region 582 599 N/A INTRINSIC
PLCYc 601 714 1.7e-51 SMART
C2 733 841 3.7e-24 SMART
low complexity region 1017 1035 N/A INTRINSIC
low complexity region 1117 1129 N/A INTRINSIC
low complexity region 1458 1473 N/A INTRINSIC
low complexity region 1581 1595 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000084105
AA Change: V421E

PolyPhen 2 Score 0.143 (Sensitivity: 0.92; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000081122
Gene: ENSMUSG00000036834
AA Change: V421E

DomainStartEndE-ValueType
PH 21 130 2.37e-6 SMART
EFh 146 174 2.41e-4 SMART
EFh 182 211 1.54e-2 SMART
Pfam:EF-hand_like 216 298 2.4e-27 PFAM
PLCXc 299 444 3.13e-71 SMART
low complexity region 458 471 N/A INTRINSIC
low complexity region 583 600 N/A INTRINSIC
PLCYc 602 715 3.4e-49 SMART
C2 734 842 5.47e-22 SMART
low complexity region 1018 1036 N/A INTRINSIC
low complexity region 1118 1130 N/A INTRINSIC
low complexity region 1459 1474 N/A INTRINSIC
low complexity region 1582 1596 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000159676
AA Change: V421E

PolyPhen 2 Score 0.143 (Sensitivity: 0.92; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000124632
Gene: ENSMUSG00000036834
AA Change: V421E

DomainStartEndE-ValueType
PH 21 130 2.37e-6 SMART
EFh 146 174 2.41e-4 SMART
EFh 182 211 1.54e-2 SMART
Pfam:EF-hand_like 216 298 1.8e-26 PFAM
PLCXc 299 444 3.13e-71 SMART
low complexity region 458 471 N/A INTRINSIC
low complexity region 583 600 N/A INTRINSIC
PLCYc 602 715 3.4e-49 SMART
C2 734 842 5.47e-22 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159982
Predicted Effect probably benign
Transcript: ENSMUST00000160638
AA Change: V421E

PolyPhen 2 Score 0.020 (Sensitivity: 0.95; Specificity: 0.80)
SMART Domains Protein: ENSMUSP00000123921
Gene: ENSMUSG00000036834
AA Change: V421E

DomainStartEndE-ValueType
PH 21 130 2.37e-6 SMART
EFh 146 174 2.41e-4 SMART
EFh 182 211 1.54e-2 SMART
Pfam:EF-hand_like 216 298 5.3e-28 PFAM
PLCXc 299 444 3.13e-71 SMART
low complexity region 458 471 N/A INTRINSIC
low complexity region 583 600 N/A INTRINSIC
PLCYc 602 715 3.4e-49 SMART
C2 734 842 5.47e-22 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000162269
AA Change: V421E

PolyPhen 2 Score 0.143 (Sensitivity: 0.92; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000124463
Gene: ENSMUSG00000036834
AA Change: V421E

DomainStartEndE-ValueType
PH 21 130 2.37e-6 SMART
EFh 146 174 2.41e-4 SMART
EFh 182 211 1.54e-2 SMART
Pfam:EF-hand_like 216 298 1.7e-26 PFAM
PLCXc 299 444 3.13e-71 SMART
low complexity region 458 471 N/A INTRINSIC
low complexity region 583 600 N/A INTRINSIC
PLCYc 602 715 3.4e-49 SMART
C2 734 842 5.47e-22 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000175947
AA Change: V421E

PolyPhen 2 Score 0.348 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000135353
Gene: ENSMUSG00000036834
AA Change: V421E

DomainStartEndE-ValueType
PH 21 130 2.37e-6 SMART
EFh 146 174 2.41e-4 SMART
EFh 182 211 1.54e-2 SMART
Pfam:EF-hand_like 216 298 1.2e-26 PFAM
PLCXc 299 444 3.13e-71 SMART
low complexity region 458 471 N/A INTRINSIC
low complexity region 582 599 N/A INTRINSIC
PLCYc 601 714 3.4e-49 SMART
C2 733 841 5.47e-22 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000177143
AA Change: V433E

PolyPhen 2 Score 0.074 (Sensitivity: 0.93; Specificity: 0.85)
SMART Domains Protein: ENSMUSP00000135424
Gene: ENSMUSG00000036834
AA Change: V433E

DomainStartEndE-ValueType
PH 33 142 2.37e-6 SMART
EFh 158 186 2.41e-4 SMART
EFh 194 223 1.54e-2 SMART
Pfam:EF-hand_like 228 310 2.3e-26 PFAM
PLCXc 311 456 3.13e-71 SMART
low complexity region 470 483 N/A INTRINSIC
low complexity region 594 611 N/A INTRINSIC
PLCYc 613 726 3.4e-49 SMART
C2 745 853 5.47e-22 SMART
low complexity region 1009 1027 N/A INTRINSIC
low complexity region 1109 1121 N/A INTRINSIC
low complexity region 1450 1465 N/A INTRINSIC
low complexity region 1573 1587 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.5%
  • 20x: 96.1%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] PLCH1 is a member of the PLC-eta family of the phosphoinositide-specific phospholipase C (PLC) superfamily of enzymes that cleave phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2) to generate second messengers inositol 1,4,5-trisphosphate (IP3) and diacylglycerol (DAG) (Hwang et al., 2005 [PubMed 15702972]).[supplied by OMIM, Jun 2009]
Allele List at MGI
Other mutations in this stock
Total: 36 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aldh1a7 A G 19: 20,699,731 (GRCm39) S75P probably damaging Het
Ankib1 A T 5: 3,751,907 (GRCm39) I711N probably damaging Het
Ankmy2 A G 12: 36,215,920 (GRCm39) N40S probably benign Het
Armc8 T C 9: 99,418,315 (GRCm39) K80E probably benign Het
Blm C A 7: 80,110,580 (GRCm39) probably null Het
Cand1 C A 10: 119,047,359 (GRCm39) Q710H possibly damaging Het
Ckap2l A T 2: 129,127,959 (GRCm39) I73N probably damaging Het
Ddx27 T A 2: 166,861,886 (GRCm39) D129E probably benign Het
Dnm3 T C 1: 162,113,587 (GRCm39) E491G probably damaging Het
Fgd6 C A 10: 93,974,190 (GRCm39) Y1310* probably null Het
Hnrnph3 C T 10: 62,855,222 (GRCm39) R21H possibly damaging Het
Hs3st4 C A 7: 123,996,365 (GRCm39) Q344K probably damaging Het
Hyal3 T C 9: 107,462,265 (GRCm39) S100P probably benign Het
Map3k19 G A 1: 127,750,694 (GRCm39) R886C probably benign Het
Mmrn2 G A 14: 34,119,581 (GRCm39) D187N probably damaging Het
Myo5c G A 9: 75,182,790 (GRCm39) A810T probably damaging Het
Noxa1 T A 2: 24,976,292 (GRCm39) E332V possibly damaging Het
Or10al7 T C 17: 38,365,693 (GRCm39) T264A probably damaging Het
Or12j5 T A 7: 140,083,713 (GRCm39) I220F probably damaging Het
Or51r1 T C 7: 102,228,481 (GRCm39) S260P probably damaging Het
Or7c70 A G 10: 78,683,395 (GRCm39) M118T probably benign Het
Parg T A 14: 31,984,693 (GRCm39) V241E probably damaging Het
Pitrm1 T A 13: 6,610,101 (GRCm39) V391D probably damaging Het
Slc27a2 C T 2: 126,406,610 (GRCm39) A98V probably damaging Het
Spta1 A T 1: 174,047,468 (GRCm39) H1704L probably damaging Het
Tbpl2 G A 2: 23,977,245 (GRCm39) P258S possibly damaging Het
Thoc2l T C 5: 104,669,744 (GRCm39) I1422T probably benign Het
Tlr11 T C 14: 50,599,717 (GRCm39) C568R probably benign Het
Tmem260 T A 14: 48,722,437 (GRCm39) M324K probably damaging Het
Tmprss11g T A 5: 86,635,269 (GRCm39) T402S probably damaging Het
Trim21 C G 7: 102,208,813 (GRCm39) R302P probably damaging Het
Uox T A 3: 146,316,057 (GRCm39) Y21* probably null Het
Vmn1r74 A G 7: 11,580,822 (GRCm39) M41V probably benign Het
Vmn2r59 A C 7: 41,695,318 (GRCm39) S365A probably benign Het
Zfp345 A T 2: 150,316,788 (GRCm39) Y6* probably null Het
Zpld2 A C 4: 133,927,523 (GRCm39) V410G probably benign Het
Other mutations in Plch1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01397:Plch1 APN 3 63,639,150 (GRCm39) splice site probably null
IGL01542:Plch1 APN 3 63,639,070 (GRCm39) missense probably damaging 0.99
IGL01999:Plch1 APN 3 63,660,728 (GRCm39) missense probably damaging 1.00
IGL02153:Plch1 APN 3 63,688,772 (GRCm39) missense probably damaging 1.00
IGL02203:Plch1 APN 3 63,606,160 (GRCm39) missense possibly damaging 0.46
IGL02220:Plch1 APN 3 63,606,382 (GRCm39) missense probably damaging 0.97
IGL02259:Plch1 APN 3 63,630,170 (GRCm39) critical splice donor site probably null
IGL02268:Plch1 APN 3 63,606,704 (GRCm39) makesense probably null
IGL02411:Plch1 APN 3 63,605,177 (GRCm39) splice site probably null
IGL02472:Plch1 APN 3 63,609,270 (GRCm39) missense probably damaging 1.00
IGL02477:Plch1 APN 3 63,660,714 (GRCm39) missense probably damaging 1.00
IGL02503:Plch1 APN 3 63,605,285 (GRCm39) missense probably damaging 1.00
IGL02800:Plch1 APN 3 63,605,899 (GRCm39) missense probably benign 0.21
IGL03167:Plch1 APN 3 63,630,165 (GRCm39) splice site probably benign
IGL03182:Plch1 APN 3 63,610,015 (GRCm39) nonsense probably null
IGL03197:Plch1 APN 3 63,660,591 (GRCm39) missense probably damaging 1.00
IGL03251:Plch1 APN 3 63,691,423 (GRCm39) missense possibly damaging 0.93
BB009:Plch1 UTSW 3 63,609,402 (GRCm39) missense probably benign 0.05
BB019:Plch1 UTSW 3 63,609,402 (GRCm39) missense probably benign 0.05
R0335:Plch1 UTSW 3 63,618,399 (GRCm39) missense probably damaging 1.00
R0347:Plch1 UTSW 3 63,660,737 (GRCm39) missense probably damaging 1.00
R0631:Plch1 UTSW 3 63,606,640 (GRCm39) missense probably benign 0.23
R0687:Plch1 UTSW 3 63,623,450 (GRCm39) missense probably damaging 1.00
R0738:Plch1 UTSW 3 63,609,974 (GRCm39) intron probably benign
R0883:Plch1 UTSW 3 63,660,677 (GRCm39) missense probably damaging 1.00
R1437:Plch1 UTSW 3 63,604,954 (GRCm39) missense probably benign 0.37
R1678:Plch1 UTSW 3 63,648,115 (GRCm39) missense probably damaging 1.00
R1738:Plch1 UTSW 3 63,626,659 (GRCm39) missense probably benign 0.12
R1929:Plch1 UTSW 3 63,651,956 (GRCm39) missense probably damaging 1.00
R1955:Plch1 UTSW 3 63,662,688 (GRCm39) missense probably damaging 0.98
R2078:Plch1 UTSW 3 63,609,364 (GRCm39) missense probably benign 0.01
R2112:Plch1 UTSW 3 63,630,227 (GRCm39) missense probably damaging 1.00
R2158:Plch1 UTSW 3 63,628,655 (GRCm39) missense probably benign 0.00
R2165:Plch1 UTSW 3 63,605,903 (GRCm39) missense probably benign 0.01
R2259:Plch1 UTSW 3 63,605,398 (GRCm39) missense possibly damaging 0.94
R2271:Plch1 UTSW 3 63,651,956 (GRCm39) missense probably damaging 1.00
R3110:Plch1 UTSW 3 63,616,952 (GRCm39) missense probably damaging 1.00
R3112:Plch1 UTSW 3 63,616,952 (GRCm39) missense probably damaging 1.00
R3407:Plch1 UTSW 3 63,606,768 (GRCm39) unclassified probably benign
R3408:Plch1 UTSW 3 63,606,768 (GRCm39) unclassified probably benign
R3791:Plch1 UTSW 3 63,606,944 (GRCm39) missense probably benign
R3793:Plch1 UTSW 3 63,605,252 (GRCm39) missense probably damaging 0.96
R3928:Plch1 UTSW 3 63,675,044 (GRCm39) missense probably damaging 1.00
R4211:Plch1 UTSW 3 63,618,640 (GRCm39) missense probably damaging 1.00
R4212:Plch1 UTSW 3 63,778,180 (GRCm39) start gained probably benign
R4223:Plch1 UTSW 3 63,609,321 (GRCm39) missense probably damaging 1.00
R4491:Plch1 UTSW 3 63,648,160 (GRCm39) missense probably damaging 1.00
R4589:Plch1 UTSW 3 63,688,928 (GRCm39) missense probably damaging 1.00
R4656:Plch1 UTSW 3 63,611,598 (GRCm39) missense probably damaging 1.00
R4701:Plch1 UTSW 3 63,606,917 (GRCm39) splice site probably null
R4716:Plch1 UTSW 3 63,688,967 (GRCm39) missense probably damaging 1.00
R4772:Plch1 UTSW 3 63,660,746 (GRCm39) missense probably damaging 1.00
R4902:Plch1 UTSW 3 63,648,264 (GRCm39) intron probably benign
R5058:Plch1 UTSW 3 63,630,202 (GRCm39) missense probably damaging 1.00
R5092:Plch1 UTSW 3 63,606,131 (GRCm39) missense probably benign 0.02
R5093:Plch1 UTSW 3 63,681,136 (GRCm39) missense probably damaging 0.99
R5210:Plch1 UTSW 3 63,607,199 (GRCm39) critical splice donor site probably null
R5368:Plch1 UTSW 3 63,609,394 (GRCm39) missense possibly damaging 0.82
R5373:Plch1 UTSW 3 63,605,499 (GRCm39) missense probably benign 0.01
R5374:Plch1 UTSW 3 63,605,499 (GRCm39) missense probably benign 0.01
R5501:Plch1 UTSW 3 63,615,162 (GRCm39) missense probably damaging 1.00
R5738:Plch1 UTSW 3 63,681,076 (GRCm39) missense probably damaging 1.00
R5835:Plch1 UTSW 3 63,604,943 (GRCm39) missense probably benign
R6106:Plch1 UTSW 3 63,609,444 (GRCm39) missense probably damaging 1.00
R6107:Plch1 UTSW 3 63,609,444 (GRCm39) missense probably damaging 1.00
R6108:Plch1 UTSW 3 63,609,444 (GRCm39) missense probably damaging 1.00
R6110:Plch1 UTSW 3 63,606,279 (GRCm39) missense possibly damaging 0.62
R6116:Plch1 UTSW 3 63,609,444 (GRCm39) missense probably damaging 1.00
R6147:Plch1 UTSW 3 63,630,302 (GRCm39) missense probably damaging 1.00
R6195:Plch1 UTSW 3 63,648,210 (GRCm39) missense probably damaging 1.00
R6315:Plch1 UTSW 3 63,688,811 (GRCm39) nonsense probably null
R6316:Plch1 UTSW 3 63,688,811 (GRCm39) nonsense probably null
R6317:Plch1 UTSW 3 63,688,811 (GRCm39) nonsense probably null
R6318:Plch1 UTSW 3 63,688,811 (GRCm39) nonsense probably null
R6324:Plch1 UTSW 3 63,688,811 (GRCm39) nonsense probably null
R6325:Plch1 UTSW 3 63,688,811 (GRCm39) nonsense probably null
R6326:Plch1 UTSW 3 63,688,811 (GRCm39) nonsense probably null
R6479:Plch1 UTSW 3 63,651,931 (GRCm39) missense probably benign 0.06
R6544:Plch1 UTSW 3 63,758,399 (GRCm39) missense probably damaging 1.00
R6767:Plch1 UTSW 3 63,662,765 (GRCm39) missense probably damaging 1.00
R6829:Plch1 UTSW 3 63,604,939 (GRCm39) missense probably damaging 0.99
R6891:Plch1 UTSW 3 63,605,504 (GRCm39) missense probably benign
R6893:Plch1 UTSW 3 63,660,562 (GRCm39) nonsense probably null
R6921:Plch1 UTSW 3 63,615,155 (GRCm39) missense possibly damaging 0.90
R7298:Plch1 UTSW 3 63,623,458 (GRCm39) nonsense probably null
R7396:Plch1 UTSW 3 63,606,375 (GRCm39) missense probably benign 0.00
R7420:Plch1 UTSW 3 63,630,278 (GRCm39) missense probably damaging 1.00
R7566:Plch1 UTSW 3 63,688,663 (GRCm39) splice site probably null
R7572:Plch1 UTSW 3 63,648,105 (GRCm39) missense possibly damaging 0.89
R7649:Plch1 UTSW 3 63,605,590 (GRCm39) nonsense probably null
R7696:Plch1 UTSW 3 63,662,726 (GRCm39) missense probably benign
R7851:Plch1 UTSW 3 63,605,855 (GRCm39) missense probably damaging 0.99
R7853:Plch1 UTSW 3 63,681,068 (GRCm39) missense probably benign 0.44
R7932:Plch1 UTSW 3 63,609,402 (GRCm39) missense probably benign 0.05
R7983:Plch1 UTSW 3 63,615,164 (GRCm39) missense probably damaging 1.00
R8057:Plch1 UTSW 3 63,605,557 (GRCm39) missense probably benign
R8066:Plch1 UTSW 3 63,618,478 (GRCm39) nonsense probably null
R8206:Plch1 UTSW 3 63,610,047 (GRCm39) splice site probably null
R8678:Plch1 UTSW 3 63,623,468 (GRCm39) nonsense probably null
R8731:Plch1 UTSW 3 63,605,059 (GRCm39) missense probably benign 0.37
R8739:Plch1 UTSW 3 63,778,106 (GRCm39) missense possibly damaging 0.66
R8853:Plch1 UTSW 3 63,688,967 (GRCm39) missense probably damaging 1.00
R8875:Plch1 UTSW 3 63,618,391 (GRCm39) missense probably damaging 1.00
R8945:Plch1 UTSW 3 63,639,039 (GRCm39) missense probably benign 0.02
R8947:Plch1 UTSW 3 63,691,547 (GRCm39) missense probably damaging 0.99
R8953:Plch1 UTSW 3 63,639,126 (GRCm39) missense possibly damaging 0.94
R9065:Plch1 UTSW 3 63,674,924 (GRCm39) missense probably damaging 1.00
R9068:Plch1 UTSW 3 63,612,036 (GRCm39) missense probably damaging 1.00
R9188:Plch1 UTSW 3 63,639,075 (GRCm39) missense probably null 1.00
R9238:Plch1 UTSW 3 63,606,412 (GRCm39) missense possibly damaging 0.53
R9478:Plch1 UTSW 3 63,606,825 (GRCm39) missense probably benign 0.01
R9526:Plch1 UTSW 3 63,758,549 (GRCm39) intron probably benign
R9539:Plch1 UTSW 3 63,691,427 (GRCm39) missense probably null 0.01
R9634:Plch1 UTSW 3 63,605,152 (GRCm39) missense probably damaging 1.00
R9643:Plch1 UTSW 3 63,660,747 (GRCm39) missense
R9659:Plch1 UTSW 3 63,681,136 (GRCm39) missense probably benign 0.17
R9711:Plch1 UTSW 3 63,615,176 (GRCm39) missense probably damaging 1.00
R9788:Plch1 UTSW 3 63,681,136 (GRCm39) missense probably benign 0.17
R9799:Plch1 UTSW 3 63,605,591 (GRCm39) missense possibly damaging 0.89
RF018:Plch1 UTSW 3 63,628,636 (GRCm39) missense probably damaging 1.00
X0028:Plch1 UTSW 3 63,651,930 (GRCm39) missense possibly damaging 0.94
Predicted Primers PCR Primer
(F):5'- CTGAAGGGGTGCCTCTACATTAAC -3'
(R):5'- TTCCAAGATCCCTGTGCACTG -3'

Sequencing Primer
(F):5'- GGGGTGCCTCTACATTAACATAAG -3'
(R):5'- GTGCACTGTCGCCATTGAC -3'
Posted On 2016-10-26