Mutagenetix > Incidental Mutation

Incidental Mutation 'R5637:Skint8'

440422

Institutional Source

Beutler Lab

Gene Symbol

Skint8

Ensembl Gene

ENSMUSG00000078599

Gene Name

selection and upkeep of intraepithelial T cells 8

Synonyms

OTTMUSG00000009475

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.093) question?

Stock #

R5637 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

111776643-111807558 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 111807390 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Methionine at position 359 (L359M)

Ref Sequence

ENSEMBL: ENSMUSP00000133268 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000165046]

AlphaFold

A7XV07

Predicted Effect

probably damaging
Transcript: ENSMUST00000165046
AA Change: L359M

PolyPhen 2 Score 0.976 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000133268
Gene: ENSMUSG00000078599
AA Change: L359M

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
IG	34	141	3.13e-5	SMART
transmembrane domain	243	265	N/A	INTRINSIC
transmembrane domain	285	307	N/A	INTRINSIC
transmembrane domain	327	352	N/A	INTRINSIC

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acmsd	T	C	1: 127,694,050 (GRCm39)	F327L	probably damaging	Het
Adgrl3	C	A	5: 81,841,391 (GRCm39)	S824Y	probably damaging	Het
Arfip2	A	G	7: 105,286,370 (GRCm39)	M144T	probably damaging	Het
Arhgap32	A	G	9: 32,158,502 (GRCm39)	N179S	probably damaging	Het
Ash2l	T	C	8: 26,317,339 (GRCm39)	Y249C	probably damaging	Het
Ccndbp1	A	G	2: 120,842,165 (GRCm39)	T141A	probably benign	Het
Cd177	T	A	7: 24,455,748 (GRCm39)	H258L	probably benign	Het
Celsr3	T	C	9: 108,714,332 (GRCm39)	W1956R	probably damaging	Het
Cep295	T	C	9: 15,245,108 (GRCm39)		probably null	Het
Cngb1	T	C	8: 95,984,549 (GRCm39)	H420R	probably damaging	Het
Cobl	C	T	11: 12,246,531 (GRCm39)		probably benign	Het
Cobll1	T	C	2: 64,956,247 (GRCm39)	D337G	possibly damaging	Het
Dmrta1	A	G	4: 89,577,068 (GRCm39)	N175D	probably benign	Het
Dnah7b	G	T	1: 46,395,674 (GRCm39)	V3859L	possibly damaging	Het
Dnah7c	A	G	1: 46,799,521 (GRCm39)		probably null	Het
Dusp4	C	A	8: 35,284,451 (GRCm39)	H255Q	probably damaging	Het
Evx1	T	C	6: 52,292,751 (GRCm39)	V134A	possibly damaging	Het
F12	T	C	13: 55,570,228 (GRCm39)	K93E	possibly damaging	Het
Fam186a	A	C	15: 99,839,628 (GRCm39)	H2205Q	possibly damaging	Het
Fcgbpl1	A	G	7: 27,852,277 (GRCm39)	N1267D	probably benign	Het
Frem2	A	G	3: 53,560,358 (GRCm39)	I1383T	probably damaging	Het
Gm11595	G	A	11: 99,663,381 (GRCm39)	R100C	unknown	Het
Gpr158	A	G	2: 21,788,083 (GRCm39)	I575V	probably benign	Het
Hdc	A	G	2: 126,458,109 (GRCm39)	V71A	probably benign	Het
Helb	G	A	10: 119,941,353 (GRCm39)	T445M	probably benign	Het
Inppl1	A	T	7: 101,478,055 (GRCm39)	S652R	probably benign	Het
Itpripl1	T	C	2: 126,984,044 (GRCm39)	D26G	probably damaging	Het
Klc1	T	A	12: 111,740,842 (GRCm39)	L106H	probably damaging	Het
Klhl25	T	A	7: 75,515,540 (GRCm39)		probably null	Het
Krt6a	T	C	15: 101,600,714 (GRCm39)	D318G	probably benign	Het
Lrp2	T	C	2: 69,302,762 (GRCm39)	N2989S	probably damaging	Het
Lta4h	A	G	10: 93,304,731 (GRCm39)		probably null	Het
Man1c1	A	G	4: 134,318,735 (GRCm39)	S251P	probably damaging	Het
Mapre2	T	C	18: 23,886,919 (GRCm39)		probably benign	Het
Mfap3l	A	T	8: 61,109,821 (GRCm39)	I66F	probably damaging	Het
Mvk	A	G	5: 114,594,003 (GRCm39)	E286G	possibly damaging	Het
Nos1ap	T	A	1: 170,176,968 (GRCm39)	K145M	probably damaging	Het
Or14a260	G	A	7: 85,984,812 (GRCm39)	T264I	probably benign	Het
Or4f52	T	A	2: 111,061,456 (GRCm39)	K227N	probably benign	Het
Or7d11	A	T	9: 19,966,279 (GRCm39)	V160D	possibly damaging	Het
Pcdh9	A	G	14: 94,123,198 (GRCm39)	F991L	possibly damaging	Het
Pcdha9	T	C	18: 37,131,426 (GRCm39)	V165A	probably benign	Het
Pcsk6	A	G	7: 65,618,745 (GRCm39)	H437R	probably damaging	Het
Pfas	C	T	11: 68,884,149 (GRCm39)	V589M	probably damaging	Het
Prpf40a	A	G	2: 53,046,746 (GRCm39)	V288A	possibly damaging	Het
Rnf183	T	C	4: 62,346,387 (GRCm39)	D137G	probably benign	Het
Rsph6a	A	G	7: 18,788,820 (GRCm39)	S51G	probably benign	Het
Scap	G	A	9: 110,210,640 (GRCm39)	A991T	possibly damaging	Het
Sdk2	C	A	11: 113,724,005 (GRCm39)	V1222F	probably damaging	Het
Sdr16c6	T	A	4: 4,063,232 (GRCm39)	N181I	possibly damaging	Het
Semp2l2a	A	T	8: 13,887,713 (GRCm39)	M126K	possibly damaging	Het
Serpinb7	A	T	1: 107,356,037 (GRCm39)	D20V	probably damaging	Het
Sh3bp2	C	A	5: 34,718,392 (GRCm39)	R531S	possibly damaging	Het
Sox2	A	G	3: 34,704,677 (GRCm39)	N38S	probably benign	Het
Spg7	C	A	8: 123,821,314 (GRCm39)	Q680K	possibly damaging	Het
Styk1	T	C	6: 131,277,381 (GRCm39)	E331G	possibly damaging	Het
Tkfc	G	A	19: 10,571,897 (GRCm39)	R380W	probably benign	Het
Trib3	A	G	2: 152,180,410 (GRCm39)	F261S	probably damaging	Het
Ubr1	T	A	2: 120,793,998 (GRCm39)	Q62L	possibly damaging	Het
Vmn2r54	T	C	7: 12,349,296 (GRCm39)	Y762C	probably benign	Het
Vmn2r97	T	A	17: 19,167,628 (GRCm39)	Y627*	probably null	Het
Zfp12	A	G	5: 143,231,451 (GRCm39)	K625E	probably damaging	Het
Zw10	T	C	9: 48,968,950 (GRCm39)	V38A	probably damaging	Het

Other mutations in Skint8

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00772:Skint8	APN	4	111,796,120 (GRCm39)	missense	probably benign	0.05
IGL01411:Skint8	APN	4	111,794,103 (GRCm39)	missense	probably damaging	0.97
IGL02973:Skint8	APN	4	111,796,790 (GRCm39)	missense	probably benign	0.09
IGL03154:Skint8	APN	4	111,796,707 (GRCm39)	splice site	probably null
FR4976:Skint8	UTSW	4	111,796,099 (GRCm39)	missense	probably benign	0.02
R0309:Skint8	UTSW	4	111,796,064 (GRCm39)	missense	probably benign	0.02
R0448:Skint8	UTSW	4	111,794,087 (GRCm39)	missense	probably damaging	1.00
R0483:Skint8	UTSW	4	111,796,020 (GRCm39)	splice site	probably benign
R0586:Skint8	UTSW	4	111,794,126 (GRCm39)	missense	probably damaging	1.00
R1076:Skint8	UTSW	4	111,784,416 (GRCm39)	missense	probably damaging	1.00
R1169:Skint8	UTSW	4	111,785,710 (GRCm39)	missense	possibly damaging	0.86
R1588:Skint8	UTSW	4	111,785,924 (GRCm39)	nonsense	probably null
R1707:Skint8	UTSW	4	111,796,769 (GRCm39)	missense	probably damaging	1.00
R1865:Skint8	UTSW	4	111,794,192 (GRCm39)	missense	probably damaging	1.00
R1954:Skint8	UTSW	4	111,807,278 (GRCm39)	missense	possibly damaging	0.54
R2147:Skint8	UTSW	4	111,794,274 (GRCm39)	missense	probably damaging	1.00
R2896:Skint8	UTSW	4	111,807,333 (GRCm39)	missense	probably null
R4945:Skint8	UTSW	4	111,796,805 (GRCm39)	missense	probably damaging	0.96
R5019:Skint8	UTSW	4	111,785,845 (GRCm39)	missense	probably damaging	0.99
R5281:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R5284:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R5289:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R5309:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R5310:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R5588:Skint8	UTSW	4	111,794,089 (GRCm39)	missense	probably benign	0.01
R5636:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R5638:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R5639:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R5719:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R5720:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R5754:Skint8	UTSW	4	111,807,387 (GRCm39)	missense	probably benign
R5850:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R5855:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R6036:Skint8	UTSW	4	111,807,390 (GRCm39)	missense	probably damaging	0.98
R6525:Skint8	UTSW	4	111,785,935 (GRCm39)	missense	probably damaging	0.98
R6554:Skint8	UTSW	4	111,784,413 (GRCm39)	missense	probably benign	0.35
R6578:Skint8	UTSW	4	111,794,159 (GRCm39)	missense	probably benign	0.03
R6841:Skint8	UTSW	4	111,785,968 (GRCm39)	missense	probably damaging	1.00
R7000:Skint8	UTSW	4	111,794,222 (GRCm39)	missense	probably benign	0.16
R7317:Skint8	UTSW	4	111,796,717 (GRCm39)	missense	possibly damaging	0.94
R7336:Skint8	UTSW	4	111,796,769 (GRCm39)	missense	probably benign	0.32
R7412:Skint8	UTSW	4	111,785,758 (GRCm39)	missense	probably benign	0.07
R7480:Skint8	UTSW	4	111,785,784 (GRCm39)	nonsense	probably null
R8027:Skint8	UTSW	4	111,785,936 (GRCm39)	missense	probably benign	0.36
R8204:Skint8	UTSW	4	111,796,090 (GRCm39)	missense	probably benign	0.03
R8963:Skint8	UTSW	4	111,794,241 (GRCm39)	missense	probably benign	0.03
R9084:Skint8	UTSW	4	111,794,210 (GRCm39)	missense	probably benign	0.11
R9249:Skint8	UTSW	4	111,794,159 (GRCm39)	missense	probably damaging	0.98
R9283:Skint8	UTSW	4	111,785,644 (GRCm39)	missense	probably damaging	0.99
Z1177:Skint8	UTSW	4	111,794,251 (GRCm39)	missense	probably benign	0.39

Predicted Primers

PCR Primer
(F):5'- GACATTTGGTAGCATGCAAAGG -3'
(R):5'- AGACCTAGGCAAATGAAGTCC -3'

Sequencing Primer
(F):5'- GTTGAACCTATAGTACACAATCTCAC -3'
(R):5'- AATCTTCTTCAAAGACATGGCCTC -3'

Posted On

2016-11-08