Incidental Mutation 'R0079:Vmn1r28'
ID 44192
Institutional Source Beutler Lab
Gene Symbol Vmn1r28
Ensembl Gene ENSMUSG00000115705
Gene Name vomeronasal 1 receptor 28
Synonyms V1rc25
MMRRC Submission 038366-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.120) question?
Stock # R0079 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 58239279-58243645 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 58242702 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Threonine at position 182 (A182T)
Ref Sequence ENSEMBL: ENSMUSP00000153785 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000176874] [ENSMUST00000226813] [ENSMUST00000227805] [ENSMUST00000228678]
AlphaFold Q8R2C9
Predicted Effect probably benign
Transcript: ENSMUST00000176874
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000135311
Gene: ENSMUSG00000094291
AA Change: A182T

DomainStartEndE-ValueType
Pfam:V1R 28 293 8.4e-59 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000226813
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000227805
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Predicted Effect probably benign
Transcript: ENSMUST00000228678
AA Change: A182T

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 98.8%
  • 3x: 97.8%
  • 10x: 95.4%
  • 20x: 90.7%
Validation Efficiency 78% (155/199)
Allele List at MGI
Other mutations in this stock
Total: 61 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2410004P03Rik T A 12: 17,057,183 (GRCm39) T105S possibly damaging Het
Abca13 G A 11: 9,243,493 (GRCm39) M1785I probably benign Het
Adamts3 G C 5: 89,840,912 (GRCm39) P804A probably benign Het
Ahrr G A 13: 74,431,143 (GRCm39) probably benign Het
Ank2 G T 3: 126,728,264 (GRCm39) D776E probably benign Het
Cep152 T A 2: 125,460,373 (GRCm39) K193M possibly damaging Het
Cep55 C T 19: 38,048,769 (GRCm39) L142F probably benign Het
Chd5 A G 4: 152,470,206 (GRCm39) Y1884C probably damaging Het
Clasp1 T C 1: 118,471,034 (GRCm39) L890P probably damaging Het
Cul9 C A 17: 46,848,589 (GRCm39) E716* probably null Het
Cytip T A 2: 58,050,006 (GRCm39) D21V probably benign Het
Denr T G 5: 124,062,908 (GRCm39) F137C probably damaging Het
Dhrs3 A T 4: 144,646,618 (GRCm39) S197C probably damaging Het
Egr4 A T 6: 85,489,751 (GRCm39) M103K probably damaging Het
Eif4enif1 C T 11: 3,192,676 (GRCm39) Q835* probably null Het
Gckr A G 5: 31,463,883 (GRCm39) I268V probably benign Het
Glt6d1 C A 2: 25,684,739 (GRCm39) probably null Het
Hpd T C 5: 123,319,544 (GRCm39) Y8C probably damaging Het
Il12rb2 A T 6: 67,338,889 (GRCm39) F16I probably benign Het
Ildr2 A T 1: 166,135,289 (GRCm39) Y347F probably damaging Het
Kcnv1 T C 15: 44,976,729 (GRCm39) D186G probably damaging Het
Khdrbs2 A G 1: 32,558,996 (GRCm39) probably null Het
L1cam G T X: 72,913,364 (GRCm39) P16H probably damaging Het
Lyn A G 4: 3,746,768 (GRCm39) H161R probably damaging Het
Mctp2 T A 7: 71,863,864 (GRCm39) probably benign Het
Miox C T 15: 89,220,477 (GRCm39) L189F possibly damaging Het
Mitf A C 6: 97,973,401 (GRCm39) M220L probably benign Het
Mrpl21 T C 19: 3,334,807 (GRCm39) Y50H possibly damaging Het
Myh1 T A 11: 67,104,237 (GRCm39) L968Q probably damaging Het
Myo3b A G 2: 69,925,502 (GRCm39) K18E possibly damaging Het
Ncoa6 TGC TGCGC 2: 155,250,211 (GRCm39) probably null Het
Nlrp2 T A 7: 5,330,729 (GRCm39) T556S possibly damaging Het
Nsmf T C 2: 24,949,096 (GRCm39) probably benign Het
Nsun7 C T 5: 66,452,856 (GRCm39) P558S probably benign Het
Or10h5 G A 17: 33,435,079 (GRCm39) R80C probably benign Het
Or1e34 T G 11: 73,778,563 (GRCm39) I212L probably benign Het
Or56a3 T C 7: 104,735,135 (GRCm39) S71P probably damaging Het
Or5d40 A T 2: 88,015,698 (GRCm39) Y159F possibly damaging Het
Phf19 T C 2: 34,785,966 (GRCm39) N501S probably benign Het
Ranbp17 A C 11: 33,450,682 (GRCm39) I85S probably damaging Het
Robo1 A G 16: 72,730,230 (GRCm39) probably benign Het
Sntg1 A G 1: 8,749,286 (GRCm39) probably benign Het
Snx15 A G 19: 6,173,943 (GRCm39) L58P probably damaging Het
Spink5 G T 18: 44,110,831 (GRCm39) C134F probably damaging Het
Strip2 T C 6: 29,920,532 (GRCm39) probably null Het
Taf1d C T 9: 15,221,240 (GRCm39) A182V probably benign Het
Tenm3 A G 8: 48,796,380 (GRCm39) V475A possibly damaging Het
Tent4b T A 8: 88,926,631 (GRCm39) Y14N possibly damaging Het
Tgds A T 14: 118,353,647 (GRCm39) H223Q possibly damaging Het
Thoc2 G T X: 40,952,985 (GRCm39) S230Y probably benign Het
Tm9sf4 T A 2: 153,033,065 (GRCm39) V290E probably damaging Het
Trak2 A T 1: 58,965,883 (GRCm39) L97Q probably damaging Het
Trnau1ap A G 4: 132,041,656 (GRCm39) Y145H probably damaging Het
Vars2 A T 17: 35,970,048 (GRCm39) D780E probably damaging Het
Vmn1r170 T A 7: 23,305,735 (GRCm39) S46T possibly damaging Het
Vmn1r20 A T 6: 57,408,777 (GRCm39) R34S possibly damaging Het
Wdr64 T C 1: 175,622,668 (GRCm39) M805T probably benign Het
Xdh G A 17: 74,198,213 (GRCm39) R1225C probably damaging Het
Zfp341 T A 2: 154,466,914 (GRCm39) Y94* probably null Het
Zfp641 T C 15: 98,186,970 (GRCm39) N218D probably benign Het
Zscan22 T C 7: 12,638,014 (GRCm39) probably null Het
Other mutations in Vmn1r28
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01365:Vmn1r28 APN 6 58,242,176 (GRCm39) missense possibly damaging 0.76
IGL01712:Vmn1r28 APN 6 58,242,393 (GRCm39) missense probably benign 0.00
IGL01788:Vmn1r28 APN 6 58,242,522 (GRCm39) missense probably benign 0.00
IGL02629:Vmn1r28 APN 6 58,242,801 (GRCm39) missense probably benign 0.00
R0001:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0009:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0040:Vmn1r28 UTSW 6 58,242,879 (GRCm39) missense probably damaging 1.00
R0078:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0081:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0164:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0164:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0165:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0166:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0167:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0172:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0173:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0284:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0288:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R0704:Vmn1r28 UTSW 6 58,242,702 (GRCm39) missense probably benign 0.00
R1143:Vmn1r28 UTSW 6 58,242,727 (GRCm39) missense probably benign 0.00
R1225:Vmn1r28 UTSW 6 58,242,951 (GRCm39) nonsense probably null
R1464:Vmn1r28 UTSW 6 58,242,217 (GRCm39) missense probably benign 0.05
R1464:Vmn1r28 UTSW 6 58,242,217 (GRCm39) missense probably benign 0.05
R1836:Vmn1r28 UTSW 6 58,242,237 (GRCm39) missense probably damaging 0.98
R1882:Vmn1r28 UTSW 6 58,242,963 (GRCm39) missense probably benign
R1905:Vmn1r28 UTSW 6 58,242,912 (GRCm39) missense probably benign 0.01
R4912:Vmn1r28 UTSW 6 58,242,525 (GRCm39) missense possibly damaging 0.86
R5071:Vmn1r28 UTSW 6 58,242,894 (GRCm39) missense probably benign 0.25
R5113:Vmn1r28 UTSW 6 58,242,843 (GRCm39) missense probably benign 0.12
R5261:Vmn1r28 UTSW 6 58,242,524 (GRCm39) missense probably benign 0.02
R5265:Vmn1r28 UTSW 6 58,242,949 (GRCm39) missense probably damaging 0.98
R5839:Vmn1r28 UTSW 6 58,242,280 (GRCm39) missense possibly damaging 0.94
R6180:Vmn1r28 UTSW 6 58,242,476 (GRCm39) missense probably damaging 0.99
R6643:Vmn1r28 UTSW 6 58,242,945 (GRCm39) missense probably benign 0.17
R6884:Vmn1r28 UTSW 6 58,242,633 (GRCm39) missense probably benign 0.03
R7393:Vmn1r28 UTSW 6 58,242,574 (GRCm39) missense possibly damaging 0.81
R7471:Vmn1r28 UTSW 6 58,242,850 (GRCm39) nonsense probably null
R7738:Vmn1r28 UTSW 6 58,243,039 (GRCm39) missense probably benign 0.00
R7961:Vmn1r28 UTSW 6 58,242,178 (GRCm39) missense probably benign
R8009:Vmn1r28 UTSW 6 58,242,178 (GRCm39) missense probably benign
R8156:Vmn1r28 UTSW 6 58,242,183 (GRCm39) missense probably damaging 1.00
R8167:Vmn1r28 UTSW 6 58,243,052 (GRCm39) missense noncoding transcript
R8879:Vmn1r28 UTSW 6 58,242,669 (GRCm39) missense probably benign 0.05
R9639:Vmn1r28 UTSW 6 58,242,996 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- TGTCACAATCAGTCCCAGTACCTCC -3'
(R):5'- ACACTACCAACAGCAAGATGGTCTG -3'

Sequencing Primer
(F):5'- GGTTTTACCAATGTGAGTGAGACC -3'
(R):5'- CAGCAAGATGGTCTGGGTGG -3'
Posted On 2013-06-11