Incidental Mutation 'R5656:Vmn1r29'
ID442315
Institutional Source Beutler Lab
Gene Symbol Vmn1r29
Ensembl Gene ENSMUSG00000091734
Gene Namevomeronasal 1 receptor 29
SynonymsV1rc2
MMRRC Submission 043302-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.077) question?
Stock #R5656 (G1)
Quality Score225
Status Not validated
Chromosome6
Chromosomal Location58301549-58311685 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to A at 58308167 bp
ZygosityHeterozygous
Amino Acid Change Leucine to Methionine at position 291 (L291M)
Ref Sequence ENSEMBL: ENSMUSP00000154278 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000168416] [ENSMUST00000226971] [ENSMUST00000227761] [ENSMUST00000228038] [ENSMUST00000228909]
Predicted Effect possibly damaging
Transcript: ENSMUST00000168416
AA Change: L291M

PolyPhen 2 Score 0.942 (Sensitivity: 0.80; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000129069
Gene: ENSMUSG00000091734
AA Change: L291M

DomainStartEndE-ValueType
Pfam:V1R 28 293 1.7e-53 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000226971
AA Change: L291M

PolyPhen 2 Score 0.942 (Sensitivity: 0.80; Specificity: 0.94)
Predicted Effect possibly damaging
Transcript: ENSMUST00000227761
AA Change: L291M

PolyPhen 2 Score 0.942 (Sensitivity: 0.80; Specificity: 0.94)
Predicted Effect possibly damaging
Transcript: ENSMUST00000228038
AA Change: L291M

PolyPhen 2 Score 0.942 (Sensitivity: 0.80; Specificity: 0.94)
Predicted Effect possibly damaging
Transcript: ENSMUST00000228909
AA Change: L291M

PolyPhen 2 Score 0.942 (Sensitivity: 0.80; Specificity: 0.94)
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 97.1%
  • 20x: 94.9%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 60 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933405L10Rik A G 8: 105,709,512 S139G probably benign Het
Adrb3 T C 8: 27,227,377 D348G probably damaging Het
Atg2b A G 12: 105,621,328 V1959A probably benign Het
Bicral G A 17: 46,808,369 T742M probably damaging Het
Bub1b T A 2: 118,605,431 I60N probably damaging Het
Ccdc162 A G 10: 41,569,934 V414A probably benign Het
Cd22 T G 7: 30,869,773 Y612S probably damaging Het
Cd68 T A 11: 69,664,421 I320F probably damaging Het
Clca3a2 A T 3: 144,797,632 N852K probably benign Het
Cpa6 T A 1: 10,329,514 H363L probably benign Het
Ddx18 A T 1: 121,561,358 L320Q probably damaging Het
Dnah5 A G 15: 28,421,064 D3849G probably benign Het
Eci1 T A 17: 24,437,309 N164K probably damaging Het
Efs T C 14: 54,917,127 T552A probably damaging Het
Fbp1 C A 13: 62,875,196 V96L probably damaging Het
Gtf3c1 T A 7: 125,662,654 N1139I probably benign Het
Gucy1b2 T C 14: 62,422,981 Y152C probably damaging Het
Gxylt1 A T 15: 93,245,661 L362Q probably damaging Het
Iqcd A G 5: 120,605,126 probably null Het
Klhl41 T A 2: 69,683,532 I585N possibly damaging Het
Map6 A G 7: 99,336,298 K470E probably damaging Het
Mast3 T C 8: 70,786,221 T496A probably damaging Het
Mbd6 A T 10: 127,285,286 probably benign Het
Melk A G 4: 44,312,237 K183R possibly damaging Het
Mta1 T C 12: 113,123,139 V152A probably damaging Het
Naa35 G A 13: 59,622,866 probably benign Het
Nav3 A C 10: 109,764,633 S1378A probably damaging Het
Ncapd3 T A 9: 27,051,645 D415E possibly damaging Het
Nlrp4f G A 13: 65,190,871 R651* probably null Het
Olfr1480 A G 19: 13,530,380 T280A probably benign Het
Olfr397 T A 11: 73,964,710 M34K probably damaging Het
Olfr497 A G 7: 108,422,618 I16V probably benign Het
P2rx7 A T 5: 122,673,717 R364W probably damaging Het
Phactr2 T C 10: 13,388,703 D2G probably benign Het
Phc3 G T 3: 30,965,866 S28R probably damaging Het
Ppfia1 A T 7: 144,519,974 probably null Het
Prdm10 C T 9: 31,353,417 T667M probably benign Het
Pwwp2b T A 7: 139,255,971 S443T possibly damaging Het
Pzp T C 6: 128,490,072 T1113A probably damaging Het
Rapgef6 A G 11: 54,636,136 E551G possibly damaging Het
Sec23ip A G 7: 128,776,784 Y774C probably damaging Het
Setdb2 T C 14: 59,419,118 D266G probably damaging Het
Shank1 T C 7: 44,352,886 V1343A probably benign Het
Slf2 T A 19: 44,973,235 D1064E probably benign Het
Slu7 A G 11: 43,443,418 K424E probably benign Het
Smg1 A T 7: 118,154,664 probably benign Het
Sptlc2 A T 12: 87,346,761 L264Q probably damaging Het
Sra1 A G 18: 36,678,407 S93P probably damaging Het
Sult1c1 T C 17: 53,964,652 E169G probably benign Het
Sv2a A G 3: 96,185,572 D196G probably damaging Het
Tbc1d22b A G 17: 29,594,780 I362M probably damaging Het
Tenm3 T C 8: 48,228,762 D2611G probably damaging Het
Tmem43 T C 6: 91,480,708 F191L probably benign Het
Trbv13-2 T A 6: 41,121,694 Y68N probably benign Het
Ttn T G 2: 76,774,654 D18312A possibly damaging Het
Ublcp1 A G 11: 44,465,606 V95A probably damaging Het
Usp17ld A G 7: 103,250,840 V295A probably damaging Het
Vsig10l C T 7: 43,464,151 R176* probably null Het
Zbtb46 A G 2: 181,423,417 probably null Het
Zfp644 A G 5: 106,637,982 V233A probably benign Het
Other mutations in Vmn1r29
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02504:Vmn1r29 APN 6 58307670 missense probably benign 0.03
IGL03351:Vmn1r29 APN 6 58307750 missense probably damaging 1.00
R0457:Vmn1r29 UTSW 6 58308087 missense probably benign 0.35
R0594:Vmn1r29 UTSW 6 58307772 missense probably benign 0.35
R0735:Vmn1r29 UTSW 6 58307732 missense probably damaging 0.96
R1422:Vmn1r29 UTSW 6 58307886 missense probably damaging 1.00
R1476:Vmn1r29 UTSW 6 58307678 missense probably benign 0.23
R1679:Vmn1r29 UTSW 6 58308018 missense probably damaging 1.00
R1831:Vmn1r29 UTSW 6 58307707 nonsense probably null
R1925:Vmn1r29 UTSW 6 58308102 missense possibly damaging 0.79
R1933:Vmn1r29 UTSW 6 58307420 missense probably benign 0.03
R4582:Vmn1r29 UTSW 6 58308032 missense probably damaging 0.98
R4677:Vmn1r29 UTSW 6 58307300 missense probably benign 0.02
R4706:Vmn1r29 UTSW 6 58308151 missense probably benign 0.00
R5023:Vmn1r29 UTSW 6 58308067 nonsense probably null
R5542:Vmn1r29 UTSW 6 58308123 missense probably benign 0.14
R5649:Vmn1r29 UTSW 6 58307691 missense probably benign 0.13
R5906:Vmn1r29 UTSW 6 58307751 missense probably benign 0.19
R6078:Vmn1r29 UTSW 6 58308095 missense probably benign 0.01
R6349:Vmn1r29 UTSW 6 58307427 missense probably damaging 1.00
R7946:Vmn1r29 UTSW 6 58307849 missense probably benign 0.18
RF020:Vmn1r29 UTSW 6 58307543 missense probably benign 0.01
U15987:Vmn1r29 UTSW 6 58308095 missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- GAGCATCCCCTGAGAAAAGG -3'
(R):5'- CCAGCTGTATGTGTAATTCCTGG -3'

Sequencing Primer
(F):5'- AGACCATCTTACTGCTTGTGG -3'
(R):5'- GTGTAATTCCTGGAGATCCTATGTAC -3'
Posted On2016-11-09