Incidental Mutation 'R5677:Ly75'
ID 442754
Institutional Source Beutler Lab
Gene Symbol Ly75
Ensembl Gene ENSMUSG00000026980
Gene Name lymphocyte antigen 75
Synonyms DEC-205, CD205
MMRRC Submission 043316-MU
Accession Numbers

Genbank: NM_013825

Essential gene? Non essential (E-score: 0.000) question?
Stock # R5677 (G1)
Quality Score 225
Status Not validated
Chromosome 2
Chromosomal Location 60292103-60383303 bp(-) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) C to T at 60299082 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Arginine to Histidine at position 1653 (R1653H)
Ref Sequence ENSEMBL: ENSMUSP00000108152 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028362] [ENSMUST00000112533]
AlphaFold Q60767
Predicted Effect probably benign
Transcript: ENSMUST00000028362
AA Change: R1653H

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000028362
Gene: ENSMUSG00000026980
AA Change: R1653H

DomainStartEndE-ValueType
signal peptide 1 27 N/A INTRINSIC
RICIN 33 146 2.63e-17 SMART
FN2 162 209 1.22e-23 SMART
CLECT 216 341 7.36e-32 SMART
CLECT 361 486 9.28e-29 SMART
CLECT 501 624 1.11e-17 SMART
CLECT 643 791 1.93e-26 SMART
CLECT 811 932 7.94e-2 SMART
CLECT 952 1091 5.81e-21 SMART
CLECT 1104 1222 1.04e-22 SMART
CLECT 1240 1382 3.48e-10 SMART
CLECT 1395 1513 9.59e-22 SMART
CLECT 1530 1661 7.79e-22 SMART
transmembrane domain 1670 1692 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000112533
AA Change: R1653H

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)
SMART Domains Protein: ENSMUSP00000108152
Gene: ENSMUSG00000026980
AA Change: R1653H

DomainStartEndE-ValueType
signal peptide 1 27 N/A INTRINSIC
RICIN 33 146 2.63e-17 SMART
FN2 162 209 1.22e-23 SMART
CLECT 216 341 7.36e-32 SMART
CLECT 361 486 9.28e-29 SMART
CLECT 501 624 1.11e-17 SMART
CLECT 643 791 1.93e-26 SMART
CLECT 811 932 7.94e-2 SMART
CLECT 952 1091 5.81e-21 SMART
CLECT 1104 1222 1.04e-22 SMART
CLECT 1240 1382 3.48e-10 SMART
CLECT 1395 1513 9.59e-22 SMART
CLECT 1530 1661 7.79e-22 SMART
transmembrane domain 1670 1692 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.9%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele display abnormalities in CD8-positive T cell morphology and cytotoxic T cell physiology. [provided by MGI curators]
Allele List at MGI

All alleles(7) : Targeted, knock-out(1) Targeted, other(1) Gene trapped(5)

Other mutations in this stock
Total: 116 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2310057J18Rik C T 10: 28,986,229 (GRCm38) V22I probably benign Het
4930430A15Rik T C 2: 111,211,565 (GRCm38) T342A probably benign Het
4931423N10Rik T A 2: 23,212,718 (GRCm38) L156Q probably damaging Het
Abca8a A T 11: 110,038,399 (GRCm38) V1296D possibly damaging Het
Abca8b C T 11: 109,940,861 (GRCm38) S1328N probably damaging Het
Adcy1 G A 11: 7,161,914 (GRCm38) M926I probably damaging Het
Aff4 G T 11: 53,400,275 (GRCm38) M687I possibly damaging Het
Agbl2 T A 2: 90,807,978 (GRCm38) Y636N possibly damaging Het
Agtr1a A T 13: 30,381,584 (GRCm38) I211F probably damaging Het
Alkbh8 T G 9: 3,385,147 (GRCm38) S480A possibly damaging Het
Ankrd13b A T 11: 77,477,544 (GRCm38) V84E probably damaging Het
Ap3b1 C T 13: 94,528,196 (GRCm38) T881I unknown Het
Apbb1 A C 7: 105,559,246 (GRCm38) D617E probably damaging Het
Apobec4 A G 1: 152,757,282 (GRCm38) R354G probably benign Het
BC003331 G A 1: 150,374,837 (GRCm38) L319F probably damaging Het
Brdt T G 5: 107,348,617 (GRCm38) C198W possibly damaging Het
Cacna1b G T 2: 24,679,358 (GRCm38) H851Q possibly damaging Het
Car2 G T 3: 14,898,055 (GRCm38) V217F possibly damaging Het
Ccdc24 A C 4: 117,869,880 (GRCm38) probably benign Het
Chodl C A 16: 78,941,315 (GRCm38) A57E probably damaging Het
Clgn G T 8: 83,409,538 (GRCm38) C185F probably damaging Het
Cltc G T 11: 86,705,242 (GRCm38) N1223K probably damaging Het
Cnot10 T C 9: 114,629,093 (GRCm38) N115S probably damaging Het
Col12a1 T C 9: 79,699,321 (GRCm38) R607G probably damaging Het
Cpd A G 11: 76,799,825 (GRCm38) V835A probably benign Het
Csmd3 G C 15: 48,622,051 (GRCm38) L153V probably damaging Het
Ctr9 A G 7: 111,044,002 (GRCm38) H527R probably benign Het
Cwc22 G A 2: 77,929,443 (GRCm38) R87W probably damaging Het
D930020B18Rik T A 10: 121,669,201 (GRCm38) N107K probably benign Het
Dgkg C A 16: 22,570,171 (GRCm38) V418L probably benign Het
Dhx40 A G 11: 86,800,963 (GRCm38) probably null Het
Diaph1 A T 18: 37,855,951 (GRCm38) M910K probably damaging Het
Diras2 T A 13: 52,507,675 (GRCm38) M199L possibly damaging Het
Dnah8 G A 17: 30,748,568 (GRCm38) D2585N probably benign Het
Dock5 T A 14: 67,777,603 (GRCm38) Q1302H probably benign Het
Dync1i2 T C 2: 71,228,623 (GRCm38) S90P probably benign Het
E2f8 A T 7: 48,867,195 (GRCm38) V812E probably damaging Het
Egfem1 C A 3: 29,690,174 (GRCm38) Q521K probably damaging Het
Fbxl18 A T 5: 142,878,720 (GRCm38) C699* probably null Het
Fgf3 C T 7: 144,838,783 (GRCm38) R26* probably null Het
Fpr-rs7 T G 17: 20,114,103 (GRCm38) I42L probably benign Het
Gm13101 A T 4: 143,965,138 (GRCm38) D338E possibly damaging Het
Gm3159 T A 14: 4,398,582 (GRCm38) M91K probably damaging Het
Gprin3 A G 6: 59,353,892 (GRCm38) S477P possibly damaging Het
Grm8 A T 6: 27,761,204 (GRCm38) probably null Het
Hepacam2 A T 6: 3,466,142 (GRCm38) D420E probably damaging Het
Hmcn1 A T 1: 150,609,778 (GRCm38) W4358R probably benign Het
Ifna6 G A 4: 88,827,719 (GRCm38) A102T probably benign Het
Ighv2-2 T C 12: 113,588,522 (GRCm38) Q32R probably benign Het
Igkv1-131 T A 6: 67,766,258 (GRCm38) Q47L possibly damaging Het
Il16 T C 7: 83,674,553 (GRCm38) E263G probably damaging Het
Kansl1 A T 11: 104,335,148 (GRCm38) C981S probably benign Het
Lrp1 A T 10: 127,574,429 (GRCm38) F1483I probably damaging Het
Ltf T C 9: 111,020,912 (GRCm38) M1T probably null Het
Macrod2 T C 2: 142,176,667 (GRCm38) F240S probably damaging Het
Man1c1 T C 4: 134,569,060 (GRCm38) E433G probably damaging Het
Mansc4 A T 6: 147,081,549 (GRCm38) M130K probably benign Het
Mccc1 C T 3: 35,990,048 (GRCm38) probably null Het
Mink1 G T 11: 70,605,165 (GRCm38) R75L possibly damaging Het
Mst1 A G 9: 108,081,286 (GRCm38) D65G probably damaging Het
Myo9b C T 8: 71,343,686 (GRCm38) A857V probably damaging Het
Ndufa4 A G 6: 11,900,575 (GRCm38) V70A probably benign Het
Npat T A 9: 53,555,100 (GRCm38) S230T probably benign Het
Nr1d1 A G 11: 98,771,308 (GRCm38) Y167H probably damaging Het
Oca2 A G 7: 56,414,462 (GRCm38) D735G probably damaging Het
Olfr13 T C 6: 43,174,331 (GRCm38) V115A probably benign Het
Olfr1359 C T 13: 21,703,223 (GRCm38) T74I probably benign Het
Olfr1383 A G 11: 49,523,944 (GRCm38) T74A probably damaging Het
Olfr835 T A 9: 19,035,558 (GRCm38) I145N possibly damaging Het
Otop1 A G 5: 38,300,163 (GRCm38) Y422C probably damaging Het
Pde4dip G A 3: 97,841,648 (GRCm38) R126* probably null Het
Pdp2 C T 8: 104,594,688 (GRCm38) P390S probably damaging Het
Pds5b A T 5: 150,716,461 (GRCm38) T14S possibly damaging Het
Pfkp T C 13: 6,588,595 (GRCm38) E580G probably damaging Het
Piezo2 G C 18: 63,117,697 (GRCm38) L444V probably benign Het
Piezo2 A T 18: 63,117,696 (GRCm38) L212Q possibly damaging Het
Pla2g4d T A 2: 120,278,948 (GRCm38) T207S possibly damaging Het
Plk2 C A 13: 110,399,057 (GRCm38) T471K possibly damaging Het
Ppp1r3g G A 13: 35,969,262 (GRCm38) E222K probably damaging Het
Prkcg A G 7: 3,323,458 (GRCm38) D480G probably damaging Het
Pxdc1 T A 13: 34,652,195 (GRCm38) T81S probably benign Het
Rnf150 A T 8: 83,003,599 (GRCm38) K253* probably null Het
Rsg1 C T 4: 141,219,866 (GRCm38) P186L probably benign Het
Sae1 T C 7: 16,370,462 (GRCm38) probably null Het
Scin C T 12: 40,063,259 (GRCm38) D538N probably damaging Het
Serpinb3c C A 1: 107,271,803 (GRCm38) K329N probably damaging Het
Sgo2b T A 8: 63,926,974 (GRCm38) K941N possibly damaging Het
Six1 C T 12: 73,046,284 (GRCm38) S48N possibly damaging Het
Slc39a8 G A 3: 135,884,688 (GRCm38) G381R probably damaging Het
Slc9b1 A G 3: 135,357,559 (GRCm38) K35E unknown Het
Srek1 C T 13: 103,759,244 (GRCm38) A274T probably damaging Het
Steap2 A T 5: 5,677,497 (GRCm38) Y279* probably null Het
Svil T A 18: 5,046,823 (GRCm38) L110* probably null Het
Syncrip T C 9: 88,456,709 (GRCm38) probably benign Het
Tcf20 A G 15: 82,853,242 (GRCm38) I1336T probably benign Het
Tecpr1 T A 5: 144,218,633 (GRCm38) K36* probably null Het
Tenm2 A G 11: 36,141,683 (GRCm38) V670A probably damaging Het
Thbd G A 2: 148,407,366 (GRCm38) T194I probably damaging Het
Tm9sf2 A T 14: 122,151,962 (GRCm38) probably null Het
Tmtc4 A T 14: 122,950,499 (GRCm38) I225N probably damaging Het
Tpp1 C T 7: 105,747,536 (GRCm38) V425M probably damaging Het
Trbc2 T A 6: 41,547,812 (GRCm38) Y144* probably null Het
Trps1 T C 15: 50,846,108 (GRCm38) D282G probably damaging Het
Tsc22d4 T A 5: 137,747,142 (GRCm38) S9R probably damaging Het
Upp1 T A 11: 9,136,025 (GRCm38) D287E probably benign Het
Uso1 A C 5: 92,201,299 (GRCm38) Q916H probably damaging Het
Uty T A Y: 1,134,902 (GRCm38) Y884F probably damaging Het
Vmn1r222 T C 13: 23,232,780 (GRCm38) R88G probably damaging Het
Vmn1r79 T C 7: 12,177,001 (GRCm38) V270A possibly damaging Het
Zbtb22 T C 17: 33,917,735 (GRCm38) S285P probably benign Het
Zfp385a A G 15: 103,318,065 (GRCm38) V82A probably damaging Het
Zfp59 T C 7: 27,854,169 (GRCm38) F349L probably benign Het
Zfp780b T G 7: 27,962,799 (GRCm38) H777P probably benign Het
Zfp82 T C 7: 30,057,124 (GRCm38) T178A probably benign Het
Zfp850 T C 7: 27,989,088 (GRCm38) Y565C probably damaging Het
Zfp957 A G 14: 79,212,767 (GRCm38) Y531H probably damaging Het
Other mutations in Ly75
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00561:Ly75 APN 2 60,376,077 (GRCm38) missense probably damaging 1.00
IGL01072:Ly75 APN 2 60,354,496 (GRCm38) missense probably damaging 1.00
IGL01409:Ly75 APN 2 60,321,692 (GRCm38) splice site probably null
IGL01432:Ly75 APN 2 60,376,007 (GRCm38) missense probably damaging 1.00
IGL01626:Ly75 APN 2 60,301,015 (GRCm38) missense probably benign 0.13
IGL01690:Ly75 APN 2 60,338,311 (GRCm38) missense probably damaging 1.00
IGL01862:Ly75 APN 2 60,299,172 (GRCm38) missense probably damaging 1.00
IGL01982:Ly75 APN 2 60,311,764 (GRCm38) missense probably damaging 1.00
IGL02075:Ly75 APN 2 60,352,356 (GRCm38) missense probably damaging 0.99
IGL02338:Ly75 APN 2 60,354,452 (GRCm38) missense probably benign 0.04
IGL02364:Ly75 APN 2 60,358,507 (GRCm38) missense probably damaging 1.00
IGL02456:Ly75 APN 2 60,293,781 (GRCm38) missense probably benign 0.09
IGL02474:Ly75 APN 2 60,383,182 (GRCm38) missense probably null 1.00
IGL02608:Ly75 APN 2 60,321,900 (GRCm38) missense probably benign 0.41
IGL02986:Ly75 APN 2 60,308,191 (GRCm38) missense probably damaging 1.00
IGL03015:Ly75 APN 2 60,376,160 (GRCm38) missense probably damaging 1.00
IGL03049:Ly75 APN 2 60,352,070 (GRCm38) missense probably damaging 0.99
euphues UTSW 2 60,299,045 (GRCm38) critical splice donor site probably null
four_score UTSW 2 60,311,771 (GRCm38) missense possibly damaging 0.75
lyly UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
Witty UTSW 2 60,354,500 (GRCm38) missense probably damaging 1.00
D605:Ly75 UTSW 2 60,352,352 (GRCm38) critical splice donor site probably null
R0046:Ly75 UTSW 2 60,339,457 (GRCm38) intron probably benign
R0055:Ly75 UTSW 2 60,321,918 (GRCm38) missense probably benign 0.01
R0055:Ly75 UTSW 2 60,321,918 (GRCm38) missense probably benign 0.01
R0071:Ly75 UTSW 2 60,321,819 (GRCm38) missense probably benign 0.01
R0071:Ly75 UTSW 2 60,321,819 (GRCm38) missense probably benign 0.01
R0285:Ly75 UTSW 2 60,318,319 (GRCm38) missense probably damaging 1.00
R0387:Ly75 UTSW 2 60,306,404 (GRCm38) missense probably benign 0.20
R0492:Ly75 UTSW 2 60,308,276 (GRCm38) missense probably damaging 1.00
R0688:Ly75 UTSW 2 60,316,221 (GRCm38) missense probably benign 0.41
R1367:Ly75 UTSW 2 60,293,758 (GRCm38) splice site probably null
R1463:Ly75 UTSW 2 60,368,757 (GRCm38) critical splice donor site probably null
R1581:Ly75 UTSW 2 60,327,893 (GRCm38) missense probably damaging 1.00
R1663:Ly75 UTSW 2 60,314,234 (GRCm38) missense probably damaging 1.00
R1818:Ly75 UTSW 2 60,311,777 (GRCm38) missense probably damaging 1.00
R1881:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R2244:Ly75 UTSW 2 60,349,913 (GRCm38) missense probably benign 0.01
R2905:Ly75 UTSW 2 60,334,554 (GRCm38) missense probably benign 0.00
R3967:Ly75 UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
R3968:Ly75 UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
R4039:Ly75 UTSW 2 60,352,995 (GRCm38) missense probably damaging 1.00
R4406:Ly75 UTSW 2 60,354,550 (GRCm38) missense probably damaging 1.00
R4526:Ly75 UTSW 2 60,330,773 (GRCm38) missense probably benign 0.09
R4647:Ly75 UTSW 2 60,308,278 (GRCm38) missense probably damaging 1.00
R4795:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R4796:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R4962:Ly75 UTSW 2 60,352,125 (GRCm38) missense probably damaging 1.00
R4979:Ly75 UTSW 2 60,375,894 (GRCm38) missense probably damaging 1.00
R5072:Ly75 UTSW 2 60,375,963 (GRCm38) missense probably damaging 1.00
R5288:Ly75 UTSW 2 60,303,641 (GRCm38) missense probably damaging 1.00
R5373:Ly75 UTSW 2 60,311,771 (GRCm38) missense possibly damaging 0.75
R5374:Ly75 UTSW 2 60,311,771 (GRCm38) missense possibly damaging 0.75
R5384:Ly75 UTSW 2 60,334,487 (GRCm38) nonsense probably null
R5385:Ly75 UTSW 2 60,303,641 (GRCm38) missense probably damaging 1.00
R5395:Ly75 UTSW 2 60,365,111 (GRCm38) missense probably benign 0.41
R5531:Ly75 UTSW 2 60,365,145 (GRCm38) missense probably damaging 0.98
R5662:Ly75 UTSW 2 60,352,381 (GRCm38) missense probably damaging 1.00
R5667:Ly75 UTSW 2 60,308,311 (GRCm38) missense probably damaging 1.00
R5668:Ly75 UTSW 2 60,354,500 (GRCm38) missense probably damaging 1.00
R5671:Ly75 UTSW 2 60,308,311 (GRCm38) missense probably damaging 1.00
R5764:Ly75 UTSW 2 60,318,439 (GRCm38) missense probably benign
R5896:Ly75 UTSW 2 60,383,146 (GRCm38) missense probably benign
R6025:Ly75 UTSW 2 60,375,962 (GRCm38) missense probably damaging 1.00
R6113:Ly75 UTSW 2 60,368,873 (GRCm38) missense probably benign 0.04
R6448:Ly75 UTSW 2 60,299,045 (GRCm38) critical splice donor site probably null
R6601:Ly75 UTSW 2 60,318,376 (GRCm38) missense probably benign 0.11
R6745:Ly75 UTSW 2 60,308,179 (GRCm38) missense probably damaging 1.00
R6955:Ly75 UTSW 2 60,327,873 (GRCm38) missense possibly damaging 0.49
R6960:Ly75 UTSW 2 60,306,405 (GRCm38) missense probably benign
R7100:Ly75 UTSW 2 60,306,434 (GRCm38) missense probably benign
R7110:Ly75 UTSW 2 60,376,184 (GRCm38) missense probably benign 0.31
R7203:Ly75 UTSW 2 60,323,852 (GRCm38) nonsense probably null
R7291:Ly75 UTSW 2 60,329,993 (GRCm38) missense probably damaging 0.98
R7308:Ly75 UTSW 2 60,334,515 (GRCm38) missense probably benign 0.04
R7447:Ly75 UTSW 2 60,334,474 (GRCm38) nonsense probably null
R7512:Ly75 UTSW 2 60,334,563 (GRCm38) missense probably damaging 1.00
R7595:Ly75 UTSW 2 60,293,827 (GRCm38) missense probably benign 0.01
R7976:Ly75 UTSW 2 60,365,088 (GRCm38) missense probably damaging 1.00
R8005:Ly75 UTSW 2 60,332,934 (GRCm38) missense probably damaging 1.00
R8171:Ly75 UTSW 2 60,314,228 (GRCm38) missense possibly damaging 0.51
R8392:Ly75 UTSW 2 60,349,940 (GRCm38) missense probably benign 0.00
R8705:Ly75 UTSW 2 60,318,385 (GRCm38) missense probably damaging 0.98
R8714:Ly75 UTSW 2 60,334,485 (GRCm38) missense probably damaging 1.00
R8798:Ly75 UTSW 2 60,323,926 (GRCm38) missense probably benign 0.32
R8799:Ly75 UTSW 2 60,348,441 (GRCm38) missense probably damaging 1.00
R8834:Ly75 UTSW 2 60,331,089 (GRCm38) missense probably benign
R8990:Ly75 UTSW 2 60,358,559 (GRCm38) missense probably benign 0.10
R9015:Ly75 UTSW 2 60,316,098 (GRCm38) missense probably benign
R9547:Ly75 UTSW 2 60,330,725 (GRCm38) critical splice donor site probably null
R9628:Ly75 UTSW 2 60,327,941 (GRCm38) missense probably damaging 1.00
R9659:Ly75 UTSW 2 60,338,321 (GRCm38) missense probably damaging 1.00
R9660:Ly75 UTSW 2 60,323,840 (GRCm38) missense probably damaging 1.00
R9747:Ly75 UTSW 2 60,306,328 (GRCm38) critical splice donor site probably null
X0025:Ly75 UTSW 2 60,354,475 (GRCm38) missense probably damaging 1.00
Z1177:Ly75 UTSW 2 60,352,133 (GRCm38) missense possibly damaging 0.65
Z1177:Ly75 UTSW 2 60,350,004 (GRCm38) nonsense probably null
Predicted Primers PCR Primer
(F):5'- ATCCTCAAAGCAATGTCTTCCC -3'
(R):5'- AATGGGTTATCTGAGCCTCATGAG -3'

Sequencing Primer
(F):5'- GGCAGCTCCCATTTTTAGTTAGAAG -3'
(R):5'- ATCTGAGCCTCATGAGTTTTTATTG -3'
Posted On 2016-11-09