Mutagenetix > Incidental Mutation

Incidental Mutation 'R5687:Supt5'

443426

Institutional Source

Beutler Lab

Gene Symbol

Supt5

Ensembl Gene

ENSMUSG00000003435

Gene Name

suppressor of Ty 5, DSIF elongation factor subunit

Synonyms

Spt5, Supt5h

MMRRC Submission

043320-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5687 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

28014316-28038171 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 28017188 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Isoleucine at position 668 (S668I)

Ref Sequence

ENSEMBL: ENSMUSP00000147164 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003527] [ENSMUST00000207563] [ENSMUST00000209141]

AlphaFold

O55201

Predicted Effect

probably benign
Transcript: ENSMUST00000003527
AA Change: S668I

PolyPhen 2 Score 0.267 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000003527
Gene: ENSMUSG00000003435
AA Change: S668I

Domain	Start	End	E-Value	Type
low complexity region	2	29	N/A	INTRINSIC
coiled coil region	36	63	N/A	INTRINSIC
Pfam:Spt5_N	73	170	8.1e-17	PFAM
NGN	174	265	2.2e-14	SMART
KOW	270	297	8.77e0	SMART
KOW	417	444	8.69e-4	SMART
KOW	469	496	9.1e-7	SMART
KOW	591	618	2.46e-3	SMART
low complexity region	677	695	N/A	INTRINSIC
KOW	697	724	3.93e-2	SMART
CTD	766	902	2.09e-31	SMART
KOW	1028	1055	9.69e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000207563

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207649

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207879

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209105

Predicted Effect

probably benign
Transcript: ENSMUST00000209141
AA Change: S668I

PolyPhen 2 Score 0.267 (Sensitivity: 0.91; Specificity: 0.88)

Meta Mutation Damage Score

0.0778

Coding Region Coverage

1x: 99.4%
3x: 98.8%
10x: 97.4%
20x: 95.6%

Validation Efficiency

99% (72/73)

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamts20	T	A	15: 94,223,852 (GRCm39)	D1292V	probably benign	Het
Adcy2	A	T	13: 68,768,938 (GRCm39)	C1063*	probably null	Het
Adcy2	A	T	13: 68,790,688 (GRCm39)	V892D	probably damaging	Het
Agtpbp1	T	C	13: 59,648,329 (GRCm39)	D497G	probably benign	Het
Anks1b	A	C	10: 90,750,573 (GRCm39)	I195L	probably benign	Het
Asmt	G	T	X: 169,111,749 (GRCm39)	S377I	unknown	Het
C1s1	T	A	6: 124,517,909 (GRCm39)	T24S	probably benign	Het
Ccdc85a	A	T	11: 28,342,854 (GRCm39)		probably benign	Het
Ccndbp1	T	C	2: 120,845,183 (GRCm39)		probably benign	Het
Cct8	T	C	16: 87,285,709 (GRCm39)	I250V	probably benign	Het
Cmya5	T	C	13: 93,234,684 (GRCm39)	T135A	possibly damaging	Het
Col11a1	T	C	3: 114,010,752 (GRCm39)		probably benign	Het
Crybg3	A	G	16: 59,379,529 (GRCm39)	M575T	probably benign	Het
Dmp1	C	T	5: 104,354,952 (GRCm39)		probably benign	Het
Emc1	G	T	4: 139,102,691 (GRCm39)	R950L	probably damaging	Het
Enpep	T	C	3: 129,092,743 (GRCm39)		probably null	Het
Eya1	G	A	1: 14,253,476 (GRCm39)	T500I	probably damaging	Het
Fam169a	T	C	13: 97,230,126 (GRCm39)	F54L	probably damaging	Het
Fbxo8	A	G	8: 57,044,552 (GRCm39)	K285R	probably damaging	Het
Galnt1	A	T	18: 24,405,807 (GRCm39)	E416D	probably benign	Het
Gcc1	T	A	6: 28,419,232 (GRCm39)		probably null	Het
Gm10800	T	A	2: 98,496,965 (GRCm39)	Y196F	probably benign	Het
Gmpr	T	A	13: 45,692,496 (GRCm39)		probably null	Het
Jrkl	C	T	9: 13,244,387 (GRCm39)	E425K	probably benign	Het
Kl	T	G	5: 150,911,931 (GRCm39)	I560S	possibly damaging	Het
Kyat3	C	A	3: 142,440,343 (GRCm39)	R356S	probably null	Het
Lrig2	C	T	3: 104,371,388 (GRCm39)		probably null	Het
Lrrc47	A	G	4: 154,100,140 (GRCm39)	T239A	probably benign	Het
Map4k2	T	C	19: 6,395,672 (GRCm39)		probably benign	Het
Mon2	A	G	10: 122,844,144 (GRCm39)	S1469P	probably damaging	Het
Mthfd1l	G	A	10: 3,940,002 (GRCm39)		probably null	Het
Mvk	G	T	5: 114,588,826 (GRCm39)	G144V	probably damaging	Het
Nasp	T	A	4: 116,463,002 (GRCm39)		probably benign	Het
Ndst4	A	C	3: 125,232,258 (GRCm39)	N276H	possibly damaging	Het
Nsmf	C	T	2: 24,946,079 (GRCm39)	P189S	probably damaging	Het
Nt5m	T	G	11: 59,743,649 (GRCm39)	D92E	probably benign	Het
Or10g6	T	G	9: 39,933,731 (GRCm39)	L14R	probably damaging	Het
Or4k39	T	C	2: 111,239,033 (GRCm39)		noncoding transcript	Het
Or4p23	A	T	2: 88,577,094 (GRCm39)	I46N	probably damaging	Het
Pan3	T	A	5: 147,391,982 (GRCm39)	I119N	probably damaging	Het
Pard6b	A	T	2: 167,940,546 (GRCm39)	S178C	probably damaging	Het
Parl	A	G	16: 20,106,728 (GRCm39)		probably benign	Het
Pdk2	A	G	11: 94,919,851 (GRCm39)		probably benign	Het
Prag1	A	G	8: 36,613,967 (GRCm39)	E1173G	probably benign	Het
Prph2	T	A	17: 47,234,391 (GRCm39)	L320Q	probably damaging	Het
Psmd3	T	C	11: 98,584,495 (GRCm39)	I200T	probably damaging	Het
Rhbdd3	T	A	11: 5,055,707 (GRCm39)	S324T	probably damaging	Het
Rps6-ps2	A	T	8: 89,533,112 (GRCm39)		noncoding transcript	Het
Rps8	G	C	4: 117,012,352 (GRCm39)		probably benign	Het
Samd4	A	G	14: 47,254,022 (GRCm39)	N61S	probably benign	Het
Sfrp2	G	A	3: 83,674,146 (GRCm39)	A100T	probably damaging	Het
Sh3bp5	C	A	14: 31,099,452 (GRCm39)	R265L	probably benign	Het
Slc6a13	A	G	6: 121,279,700 (GRCm39)	T25A	probably benign	Het
Sntg1	C	A	1: 8,533,667 (GRCm39)	R329L	possibly damaging	Het
Sorbs2	T	C	8: 46,228,669 (GRCm39)	F285L	probably damaging	Het
Speg	T	C	1: 75,395,773 (GRCm39)		probably null	Het
Srgap1	T	C	10: 121,661,541 (GRCm39)	Y533C	probably damaging	Het
Taf6l	T	G	19: 8,750,676 (GRCm39)	I133L	probably benign	Het
Thrap3	G	A	4: 126,074,279 (GRCm39)		probably benign	Het
Tmem115	A	G	9: 107,412,054 (GRCm39)	N126S	probably benign	Het
Trgc1	A	T	13: 19,400,729 (GRCm39)	I153F	unknown	Het
Tspoap1	T	A	11: 87,667,952 (GRCm39)	I1192N	probably damaging	Het
Vcan	T	C	13: 89,826,253 (GRCm39)	I3184V	probably damaging	Het
Yeats4	G	A	10: 117,051,585 (GRCm39)	T224M	probably benign	Het
Zc3h13	A	T	14: 75,569,400 (GRCm39)	R1416*	probably null	Het
Zmynd12	T	A	4: 119,299,098 (GRCm39)	Y193N	probably damaging	Het

Other mutations in Supt5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00468:Supt5	APN	7	28,014,807 (GRCm39)	missense	probably benign	0.08
IGL01077:Supt5	APN	7	28,023,213 (GRCm39)	nonsense	probably null
IGL01477:Supt5	APN	7	28,016,689 (GRCm39)	missense	possibly damaging	0.94
IGL01813:Supt5	APN	7	28,023,400 (GRCm39)	missense	probably damaging	0.99
IGL02405:Supt5	APN	7	28,015,249 (GRCm39)	missense	probably benign	0.00
IGL02525:Supt5	APN	7	28,018,372 (GRCm39)	splice site	probably benign
IGL02584:Supt5	APN	7	28,025,592 (GRCm39)	missense	probably benign	0.08
IGL03387:Supt5	APN	7	28,019,508 (GRCm39)	missense	possibly damaging	0.89
R0420:Supt5	UTSW	7	28,016,754 (GRCm39)	splice site	probably benign
R0715:Supt5	UTSW	7	28,028,462 (GRCm39)	missense	probably damaging	1.00
R1226:Supt5	UTSW	7	28,028,172 (GRCm39)	missense	probably benign	0.03
R1655:Supt5	UTSW	7	28,029,449 (GRCm39)	missense	probably benign	0.00
R1801:Supt5	UTSW	7	28,016,639 (GRCm39)	critical splice donor site	probably null
R2424:Supt5	UTSW	7	28,014,590 (GRCm39)	missense	possibly damaging	0.47
R2883:Supt5	UTSW	7	28,028,745 (GRCm39)	missense	possibly damaging	0.75
R4280:Supt5	UTSW	7	28,016,498 (GRCm39)	missense	probably damaging	1.00
R4614:Supt5	UTSW	7	28,025,397 (GRCm39)	missense	possibly damaging	0.65
R4792:Supt5	UTSW	7	28,015,754 (GRCm39)	missense	probably benign	0.19
R4997:Supt5	UTSW	7	28,015,462 (GRCm39)	missense	probably benign	0.05
R5041:Supt5	UTSW	7	28,014,805 (GRCm39)	missense	probably damaging	1.00
R5062:Supt5	UTSW	7	28,028,440 (GRCm39)	splice site	probably null
R5119:Supt5	UTSW	7	28,015,795 (GRCm39)	missense	probably damaging	1.00
R5170:Supt5	UTSW	7	28,015,508 (GRCm39)	missense	probably benign	0.05
R5720:Supt5	UTSW	7	28,021,993 (GRCm39)	missense	probably damaging	0.97
R5935:Supt5	UTSW	7	28,028,900 (GRCm39)	missense	probably benign	0.09
R6032:Supt5	UTSW	7	28,015,600 (GRCm39)	missense	probably damaging	1.00
R6032:Supt5	UTSW	7	28,015,600 (GRCm39)	missense	probably damaging	1.00
R6049:Supt5	UTSW	7	28,014,622 (GRCm39)	missense	probably benign	0.32
R7043:Supt5	UTSW	7	28,019,435 (GRCm39)	missense	probably benign	0.00
R7085:Supt5	UTSW	7	28,030,914 (GRCm39)	missense	unknown
R7152:Supt5	UTSW	7	28,023,325 (GRCm39)	missense	probably benign	0.00
R7201:Supt5	UTSW	7	28,016,213 (GRCm39)	missense	probably benign	0.03
R7401:Supt5	UTSW	7	28,023,197 (GRCm39)	missense	probably damaging	0.99
R7959:Supt5	UTSW	7	28,015,224 (GRCm39)	missense	probably benign	0.43
R8181:Supt5	UTSW	7	28,030,899 (GRCm39)	missense	unknown
R8998:Supt5	UTSW	7	28,037,848 (GRCm39)	missense	unknown
R8999:Supt5	UTSW	7	28,037,848 (GRCm39)	missense	unknown
R9021:Supt5	UTSW	7	28,016,671 (GRCm39)	missense	probably damaging	0.98
R9314:Supt5	UTSW	7	28,019,799 (GRCm39)	missense	probably damaging	0.99
R9345:Supt5	UTSW	7	28,016,412 (GRCm39)	missense	probably benign	0.03
R9477:Supt5	UTSW	7	28,025,500 (GRCm39)	missense	probably damaging	0.99
R9568:Supt5	UTSW	7	28,014,688 (GRCm39)	missense	probably damaging	1.00
Z1177:Supt5	UTSW	7	28,016,456 (GRCm39)	missense	possibly damaging	0.90

Predicted Primers

PCR Primer
(F):5'- GCTATATCCACAGCCAGGAC -3'
(R):5'- CCTAGGAGATGGAGGCTTTG -3'

Sequencing Primer
(F):5'- AAATCCCTCTCTACCAGCTTGAG -3'
(R):5'- CTTTGTCCATAGGAGGAGGAATG -3'

Posted On

2016-11-09