Mutagenetix > Incidental Mutations

Incidental Mutation 'H8562:Dmbt1'

44343

Institutional Source

Beutler Lab

Gene Symbol

Dmbt1

Ensembl Gene

ENSMUSG00000047517

Gene Name

deleted in malignant brain tumors 1

Synonyms

CRP-[a], Crpd, gp300, vomeroglandin, CRP-[b], ebnerin, MUCLIN, hensin

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.204) question?

Stock #

H8562 (G3) of strain 604

Quality Score

210

Status

Validated

Chromosome

Chromosomal Location

131032053-131121630 bp(+) (GRCm38)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 131112076 bp

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Stop codon at position 1450 (C1450*)

Ref Sequence

ENSEMBL: ENSMUSP00000148657 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000084509] [ENSMUST00000124096] [ENSMUST00000208311] [ENSMUST00000213064]

Predicted Effect

probably null
Transcript: ENSMUST00000084509
AA Change: C1613*

SMART Domains

Protein: ENSMUSP00000081556
Gene: ENSMUSG00000047517
AA Change: C1613*

Domain	Start	End	E-Value	Type
SR	37	137	5.54e-59	SMART
SR	186	286	3.6e-58	SMART
SR	324	424	1.21e-59	SMART
SR	463	563	2.97e-59	SMART
SR	602	702	3.36e-58	SMART
SR	741	841	5.17e-59	SMART
low complexity region	848	879	N/A	INTRINSIC
CUB	884	993	4.22e-41	SMART
CUB	1000	1109	7.35e-41	SMART
CUB	1126	1235	3.73e-42	SMART
CUB	1242	1351	2.02e-38	SMART
SR	1371	1471	3.92e-59	SMART
low complexity region	1476	1488	N/A	INTRINSIC
CUB	1494	1603	6.7e-44	SMART
ZP	1612	1860	8.11e-74	SMART
transmembrane domain	1906	1928	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000124096

SMART Domains

Protein: ENSMUSP00000130971
Gene: ENSMUSG00000030849

Domain	Start	End	E-Value	Type
Pfam:Pkinase	1	118	4.8e-19	PFAM
Pfam:Pkinase_Tyr	1	118	1.7e-50	PFAM
low complexity region	146	160	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000208311
AA Change: C1624*

Predicted Effect

probably null
Transcript: ENSMUST00000213064
AA Change: C1450*

Meta Mutation Damage Score

0.9717

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 95.0%

Validation Efficiency

96% (109/114)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Loss of sequences from human chromosome 10q has been associated with the progression of human cancers. This gene was originally isolated based on its deletion in a medulloblastoma cell line. This gene is expressed with transcripts of 6.0, 7.5, and 8.0 kb in fetal lung and with one transcript of 8.0 kb in adult lung, although the 7.5 kb transcript has not been characterized. The encoded protein precursor is a glycoprotein containing multiple scavenger receptor cysteine-rich (SRCR) domains separated by SRCR-interspersed domains (SID). Transcript variant 2 (8.0 kb) has been shown to bind surfactant protein D independently of carbohydrate recognition. This indicates that DMBT1 may not be a classical tumor suppressor gene, but rather play a role in the interaction of tumor cells and the immune system. [provided by RefSeq, Mar 2016]
PHENOTYPE: Mice homozygous for one null allele display embryonic lethality and an abnormal inner cell mass. Mice homozygous for a different null allele are viable and fertile with an increased susceptibility to induced colitis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 109 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700081O15Rik	A	G	19: 7,422,921	K251E	probably benign	Het
2810021J22Rik	T	C	11: 58,880,891	C400R	probably damaging	Het
4930519F16Rik	A	T	X: 103,255,857		noncoding transcript	Het
5430402E10Rik	G	T	X: 77,922,734	H117Q	probably damaging	Het
Abca15	T	C	7: 120,374,854		probably benign	Het
Abca8a	A	G	11: 110,043,009	I1190T	probably benign	Het
Acmsd	T	C	1: 127,749,058	Y107H	probably benign	Het
Adcy5	A	G	16: 35,267,181	I471V	probably damaging	Het
Aff2	G	A	X: 69,848,926	A939T	unknown	Het
Ampd2	C	A	3: 108,081,111	A11S	probably benign	Het
Aoah	T	A	13: 20,816,524	C43S	probably damaging	Het
Apobec4	T	C	1: 152,757,174	S318P	probably damaging	Het
Arid2	C	T	15: 96,369,546	P636S	possibly damaging	Het
Atp13a3	A	T	16: 30,359,725	C164*	probably null	Het
Avl9	G	A	6: 56,757,310	A625T	probably damaging	Het
Bco1	G	T	8: 117,105,647		probably benign	Het
Brd3	C	T	2: 27,450,533	G555S	possibly damaging	Het
Brd4	A	T	17: 32,229,403		probably benign	Het
Btbd7	A	G	12: 102,788,302	V735A	probably benign	Het
C2cd2	G	T	16: 97,879,640	Q325K	possibly damaging	Het
Carmil1	A	G	13: 24,064,647	V485A	probably benign	Het
Casz1	T	C	4: 148,933,451	L113P	probably damaging	Het
Ccdc3	T	C	2: 5,138,205	L91S	probably damaging	Het
Cd180	A	G	13: 102,705,418	K324R	probably benign	Het
Cd200r4	A	G	16: 44,833,373	T132A	possibly damaging	Het
Cops7a	A	G	6: 124,962,453		probably benign	Het
Cyp2c29	A	T	19: 39,309,662	N217I	probably damaging	Het
Dapk1	C	A	13: 60,761,312	H1246Q	probably damaging	Het
Dnah10	T	A	5: 124,829,529	M4151K	probably damaging	Het
Dnaic1	C	A	4: 41,629,833	F452L	possibly damaging	Het
Dync1h1	T	C	12: 110,616,807	M446T	probably benign	Het
Dytn	A	C	1: 63,674,912	S143A	possibly damaging	Het
E130308A19Rik	T	A	4: 59,691,033	L289Q	possibly damaging	Het
Efemp2	G	T	19: 5,480,649	V250L	probably benign	Het
Elmo1	T	C	13: 20,280,863	S201P	probably damaging	Het
Fam208b	A	T	13: 3,577,000	S983R	probably damaging	Het
Fam222b	T	A	11: 78,154,578	C194S	probably damaging	Het
Fam91a1	G	A	15: 58,427,121		probably null	Het
Fcf1	T	A	12: 84,980,612		probably benign	Het
Fnip1	T	A	11: 54,480,297	F134L	probably damaging	Het
Fyn	T	C	10: 39,511,954	S69P	probably benign	Het
Gabbr1	T	C	17: 37,071,949	Y845H	probably damaging	Het
Gfra2	C	T	14: 70,978,378	T169M	possibly damaging	Het
Gm13083	T	A	4: 143,615,350		probably benign	Het
Gm1966	A	G	7: 106,603,149	F296S	probably damaging	Het
Gm5435	T	C	12: 82,495,675		noncoding transcript	Het
Gm7251	A	G	13: 49,805,672	Y94H	probably damaging	Het
Heatr1	T	A	13: 12,408,713	N530K	probably benign	Het
Hist1h2bn	T	C	13: 21,754,478	V119A	probably benign	Het
Icam5	A	T	9: 21,035,146	E355V	probably benign	Het
Ighv3-6	A	G	12: 114,288,538		probably benign	Het
Intu	T	C	3: 40,692,673	S659P	probably damaging	Het
Ivns1abp	T	C	1: 151,354,695	V198A	probably damaging	Het
Katnb1	T	A	8: 95,095,510		probably benign	Het
Kcna5	T	C	6: 126,533,423	S581G	probably damaging	Het
Kif23	A	G	9: 61,924,065	V741A	probably benign	Het
Lbr	A	T	1: 181,820,668		probably benign	Het
Loxhd1	A	C	18: 77,341,931	T508P	possibly damaging	Het
Lrrk2	T	A	15: 91,673,358	N26K	probably benign	Het
Ly96	A	T	1: 16,691,694	K41N	probably damaging	Het
Lypd1	C	T	1: 125,910,537		probably benign	Het
Macf1	A	G	4: 123,466,040	V1817A	probably benign	Het
Mknk2	A	G	10: 80,668,934		probably benign	Het
Mmp19	A	T	10: 128,795,601	I117L	probably benign	Het
Mmrn1	G	A	6: 60,958,180	G220D	probably damaging	Het
Mtrr	T	C	13: 68,564,377	H630R	probably damaging	Het
Nfat5	T	C	8: 107,339,382		probably benign	Het
Ngef	C	A	1: 87,487,807	K288N	possibly damaging	Het
Nkain4	T	C	2: 180,943,145	E71G	probably benign	Het
Odc1	T	C	12: 17,548,037	Y122H	probably benign	Het
Olfr384	T	C	11: 73,603,447	I289T	probably damaging	Het
Olfr715	C	A	7: 107,129,241	A51S	probably benign	Het
Olfr919	C	A	9: 38,697,910	G156V	probably damaging	Het
Osbpl3	A	T	6: 50,347,466	N190K	probably benign	Het
Osgepl1	T	C	1: 53,315,039	V54A	probably damaging	Het
Otogl	T	C	10: 107,910,956	Y19C	probably benign	Het
Pop1	T	C	15: 34,530,212	S919P	probably benign	Het
Prl8a9	A	G	13: 27,562,601		probably benign	Het
Prr14l	A	T	5: 32,793,728	V1907D	probably damaging	Het
Ptprn	T	C	1: 75,254,620	T547A	possibly damaging	Het
Rdh14	G	T	12: 10,394,709	V187F	probably damaging	Het
Rev1	A	G	1: 38,056,767	L853P	probably damaging	Het
Robo4	T	C	9: 37,405,810		probably benign	Het
Ryr2	A	G	13: 11,717,141		probably benign	Het
Sec16a	G	A	2: 26,441,505	P166L	probably benign	Het
Slc6a19	G	A	13: 73,700,124		probably benign	Het
Slco4c1	T	A	1: 96,842,485	T285S	probably benign	Het
Speg	G	T	1: 75,415,597	A1633S	probably benign	Het
Srpk1	T	A	17: 28,602,733	T236S	probably benign	Het
Stxbp5	T	C	10: 9,769,443	N262S	probably benign	Het
Suco	T	C	1: 161,852,851	E317G	probably damaging	Het
Syk	A	G	13: 52,640,621	N441D	probably damaging	Het
Syt17	T	C	7: 118,408,069	K334R	probably benign	Het
Sytl5	A	T	X: 9,960,096	H436L	probably benign	Het
Thada	A	G	17: 84,446,544	L333P	probably damaging	Het
Thap12	T	C	7: 98,715,107	Y161H	probably damaging	Het
Thbs2	C	T	17: 14,671,453	V941I	probably benign	Het
Tktl1	A	T	X: 74,181,864	E72V	probably damaging	Het
Tm4sf5	T	A	11: 70,505,512		probably benign	Het
Urb1	T	A	16: 90,769,469	M1477L	probably benign	Het
Vcp	T	A	4: 42,982,596	I699F	probably damaging	Het
Vmn1r232	T	C	17: 20,913,394	T315A	probably benign	Het
Vmn2r100	T	A	17: 19,521,490	W155R	possibly damaging	Het
Vmn2r19	T	C	6: 123,315,902	I301T	possibly damaging	Het
Wwc2	A	G	8: 47,920,666	V55A	possibly damaging	Het
Xirp2	A	G	2: 67,515,457	T2681A	probably benign	Het
Zfp39	C	A	11: 58,900,686	L58F	probably damaging	Het
Zfp612	T	C	8: 110,090,038	F587L	probably damaging	Het
Zfp810	T	C	9: 22,279,091	R174G	probably benign	Het

Other mutations in Dmbt1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00091:Dmbt1	APN	7	131079540	intron	probably benign
IGL00161:Dmbt1	APN	7	131109628	missense	probably damaging	1.00
IGL00331:Dmbt1	APN	7	131099290	missense	possibly damaging	0.46
IGL00769:Dmbt1	APN	7	131082500	missense	probably damaging	0.99
IGL00792:Dmbt1	APN	7	131097607	missense	possibly damaging	0.66
IGL00823:Dmbt1	APN	7	131058158	missense	probably benign	0.26
IGL01072:Dmbt1	APN	7	131085368	splice site	probably benign
IGL01317:Dmbt1	APN	7	131041191	missense	probably damaging	1.00
IGL01335:Dmbt1	APN	7	131088767	missense	possibly damaging	0.95
IGL01372:Dmbt1	APN	7	131103679	missense	possibly damaging	0.90
IGL01511:Dmbt1	APN	7	131116728	missense	possibly damaging	0.49
IGL01627:Dmbt1	APN	7	131081185	missense	probably benign	0.14
IGL01890:Dmbt1	APN	7	131074419	intron	probably benign
IGL02160:Dmbt1	APN	7	131082688	missense	probably damaging	1.00
IGL02186:Dmbt1	APN	7	131093256	splice site	probably benign
IGL02197:Dmbt1	APN	7	131085422	splice site	probably benign
IGL02332:Dmbt1	APN	7	131066613	intron	probably benign
IGL02427:Dmbt1	APN	7	131088085	splice site	probably null
IGL02726:Dmbt1	APN	7	131074410	intron	probably benign
IGL02967:Dmbt1	APN	7	131071189	missense	possibly damaging	0.70
IGL03003:Dmbt1	APN	7	131082679	missense	probably benign	0.05
IGL03089:Dmbt1	APN	7	131111049	missense	probably damaging	0.99
K3955:Dmbt1	UTSW	7	131119564	missense	probably damaging	0.98
R0051:Dmbt1	UTSW	7	131119496	missense	possibly damaging	0.79
R0051:Dmbt1	UTSW	7	131119496	missense	possibly damaging	0.79
R0257:Dmbt1	UTSW	7	131106393	missense	probably damaging	1.00
R0388:Dmbt1	UTSW	7	131096049	splice site	probably benign
R0427:Dmbt1	UTSW	7	131040902	nonsense	probably null
R0478:Dmbt1	UTSW	7	131041187	missense	possibly damaging	0.93
R0502:Dmbt1	UTSW	7	131097673	splice site	probably null
R0538:Dmbt1	UTSW	7	131049901	splice site	probably benign
R0626:Dmbt1	UTSW	7	131102081	missense	probably damaging	0.97
R0631:Dmbt1	UTSW	7	131097653	missense	possibly damaging	0.90
R0948:Dmbt1	UTSW	7	131093117	missense	possibly damaging	0.95
R1169:Dmbt1	UTSW	7	131074524	critical splice donor site	probably null
R1413:Dmbt1	UTSW	7	131050214	missense	probably damaging	1.00
R1458:Dmbt1	UTSW	7	131044487	splice site	probably benign
R1463:Dmbt1	UTSW	7	131109637	critical splice donor site	probably null
R1509:Dmbt1	UTSW	7	131074331	intron	probably benign
R1990:Dmbt1	UTSW	7	131058288	missense	probably damaging	0.98
R2018:Dmbt1	UTSW	7	131110989	missense	possibly damaging	0.93
R2019:Dmbt1	UTSW	7	131110989	missense	possibly damaging	0.93
R2042:Dmbt1	UTSW	7	131106359	missense	probably damaging	0.99
R2056:Dmbt1	UTSW	7	131106170	missense	possibly damaging	0.80
R2057:Dmbt1	UTSW	7	131106170	missense	possibly damaging	0.80
R2058:Dmbt1	UTSW	7	131106170	missense	possibly damaging	0.80
R2059:Dmbt1	UTSW	7	131106170	missense	possibly damaging	0.80
R2061:Dmbt1	UTSW	7	131099133	missense	possibly damaging	0.66
R2092:Dmbt1	UTSW	7	131050018	missense	probably damaging	1.00
R2102:Dmbt1	UTSW	7	131102032	missense	probably damaging	0.97
R2155:Dmbt1	UTSW	7	131097575	missense	possibly damaging	0.66
R2243:Dmbt1	UTSW	7	131046562	missense	probably benign	0.03
R2256:Dmbt1	UTSW	7	131090494	missense	probably benign	0.01
R2391:Dmbt1	UTSW	7	131106468	missense	probably damaging	1.00
R2394:Dmbt1	UTSW	7	131094734	nonsense	probably null
R3014:Dmbt1	UTSW	7	131032097	intron	probably benign
R3155:Dmbt1	UTSW	7	131050157	nonsense	probably null
R3176:Dmbt1	UTSW	7	131088071	missense	probably benign	0.19
R3276:Dmbt1	UTSW	7	131088071	missense	probably benign	0.19
R3442:Dmbt1	UTSW	7	131106249	missense	probably damaging	1.00
R3807:Dmbt1	UTSW	7	131112090	missense	possibly damaging	0.77
R4060:Dmbt1	UTSW	7	131074202	intron	probably benign
R4396:Dmbt1	UTSW	7	131116632	missense	probably damaging	0.98
R4453:Dmbt1	UTSW	7	131040934	missense	probably damaging	1.00
R5001:Dmbt1	UTSW	7	131050012	missense	probably damaging	1.00
R5051:Dmbt1	UTSW	7	131094742	missense	probably benign	0.01
R5156:Dmbt1	UTSW	7	131097670	critical splice donor site	probably null
R5225:Dmbt1	UTSW	7	131094735	missense	possibly damaging	0.84
R5281:Dmbt1	UTSW	7	131082619	missense	probably damaging	1.00
R5308:Dmbt1	UTSW	7	131041021	missense	probably damaging	1.00
R5447:Dmbt1	UTSW	7	131119511	missense	probably damaging	0.99
R5467:Dmbt1	UTSW	7	131040993	missense	probably damaging	1.00
R5497:Dmbt1	UTSW	7	131063403	intron	probably benign
R5526:Dmbt1	UTSW	7	131041190	missense	probably damaging	1.00
R5554:Dmbt1	UTSW	7	131099300	nonsense	probably null
R5566:Dmbt1	UTSW	7	131106273	missense	probably damaging	1.00
R5595:Dmbt1	UTSW	7	131054067	missense	probably benign	0.17
R6154:Dmbt1	UTSW	7	131109641	splice site	probably null
R6188:Dmbt1	UTSW	7	131097631	missense	probably damaging	0.97
R6214:Dmbt1	UTSW	7	131066733	missense	possibly damaging	0.95
R6215:Dmbt1	UTSW	7	131066733	missense	possibly damaging	0.95
R6391:Dmbt1	UTSW	7	131058254	missense	probably damaging	1.00
R6397:Dmbt1	UTSW	7	131103578	missense	possibly damaging	0.46
R6436:Dmbt1	UTSW	7	131116641	missense	probably benign	0.01
R6603:Dmbt1	UTSW	7	131046510	intron	probably null
R6719:Dmbt1	UTSW	7	131119603	missense	possibly damaging	0.83
R6781:Dmbt1	UTSW	7	131046561	missense	probably benign	0.16
R7148:Dmbt1	UTSW	7	131066734	nonsense	probably null
R7191:Dmbt1	UTSW	7	131044520	missense	unknown
R7269:Dmbt1	UTSW	7	131066621	missense	unknown
R7288:Dmbt1	UTSW	7	131083789	nonsense	probably null
R7296:Dmbt1	UTSW	7	131112132	missense	unknown
R7349:Dmbt1	UTSW	7	131041124	missense	unknown
R7386:Dmbt1	UTSW	7	131112236	missense	unknown
R7428:Dmbt1	UTSW	7	131108463	missense	possibly damaging	0.53
R7481:Dmbt1	UTSW	7	131079511	critical splice acceptor site	probably null
R7486:Dmbt1	UTSW	7	131066462	missense	unknown
R7513:Dmbt1	UTSW	7	131090512	missense	unknown
R7553:Dmbt1	UTSW	7	131104867	missense	unknown
R7567:Dmbt1	UTSW	7	131061363	splice site	probably null
R7584:Dmbt1	UTSW	7	131088751	nonsense	probably null
R7736:Dmbt1	UTSW	7	131116896	missense	unknown
R7758:Dmbt1	UTSW	7	131121197	missense	unknown
X0024:Dmbt1	UTSW	7	131112248	nonsense	probably null
X0062:Dmbt1	UTSW	7	131094851	missense	possibly damaging	0.81

Predicted Primers

PCR Primer
(F):5'- GTTGCTCTCCTTCATGGGAGAATGC -3'
(R):5'- ACCTGTTTGATTGTGCCACAGCC -3'

Sequencing Primer
(F):5'- CCTTCATGGGAGAATGCTAACTTG -3'
(R):5'- CTGTGTAGGGAATTGTGAATATGACC -3'

Posted On

2013-06-11