Mutagenetix > Incidental Mutation

Incidental Mutation 'R5689:Rnf146'

443580

Institutional Source

Beutler Lab

Gene Symbol

Rnf146

Ensembl Gene

ENSMUSG00000038876

Gene Name

ring finger protein 146

Synonyms

2610509H23Rik, Iduna

MMRRC Submission

043322-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.452) question?

Stock #

R5689 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

29220172-29238438 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 29223800 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 29 (T29A)

Ref Sequence

ENSEMBL: ENSMUSP00000149976 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020034] [ENSMUST00000037548] [ENSMUST00000160144] [ENSMUST00000160372] [ENSMUST00000160399] [ENSMUST00000161508] [ENSMUST00000161605] [ENSMUST00000162335] [ENSMUST00000214896]

AlphaFold

Q9CZW6

Predicted Effect

probably benign
Transcript: ENSMUST00000020034

SMART Domains

Protein: ENSMUSP00000020034
Gene: ENSMUSG00000019883

Domain	Start	End	E-Value	Type
Pfam:ECH_1	74	307	4.8e-39	PFAM
Pfam:ECH_2	79	321	4.5e-24	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000037548
AA Change: T29A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000037224
Gene: ENSMUSG00000038876
AA Change: T29A

Domain	Start	End	E-Value	Type
RING	38	75	1.79e-6	SMART
WWE	102	177	4.93e-35	SMART
low complexity region	197	212	N/A	INTRINSIC
low complexity region	282	304	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000160144
AA Change: T29A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000124288
Gene: ENSMUSG00000038876
AA Change: T29A

Domain	Start	End	E-Value	Type
RING	38	75	1.79e-6	SMART
WWE	102	177	4.93e-35	SMART
low complexity region	197	212	N/A	INTRINSIC
low complexity region	282	304	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000160372
AA Change: T29A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000124215
Gene: ENSMUSG00000038876
AA Change: T29A

Domain	Start	End	E-Value	Type
RING	38	75	1.79e-6	SMART
WWE	102	177	4.93e-35	SMART
low complexity region	197	212	N/A	INTRINSIC
low complexity region	282	304	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000160399

SMART Domains

Protein: ENSMUSP00000125553
Gene: ENSMUSG00000019883

Domain	Start	End	E-Value	Type
Pfam:ECH	49	293	1.6e-42	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000161508
AA Change: T29A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000124814
Gene: ENSMUSG00000038876
AA Change: T29A

Domain	Start	End	E-Value	Type
RING	38	75	1.79e-6	SMART
WWE	102	177	4.93e-35	SMART
low complexity region	197	212	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000161605

SMART Domains

Protein: ENSMUSP00000125048
Gene: ENSMUSG00000019883

Domain	Start	End	E-Value	Type
Pfam:ECH	49	165	4.4e-24	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000162335
AA Change: T29A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000124772
Gene: ENSMUSG00000038876
AA Change: T29A

Domain	Start	End	E-Value	Type
RING	38	75	1.79e-6	SMART
WWE	102	177	4.93e-35	SMART
low complexity region	197	212	N/A	INTRINSIC
low complexity region	282	304	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000178368

Predicted Effect

probably benign
Transcript: ENSMUST00000214896
AA Change: T29A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000215840

Meta Mutation Damage Score

0.0605

Coding Region Coverage

1x: 99.5%
3x: 98.8%
10x: 97.5%
20x: 95.8%

Validation Efficiency

95% (63/66)

MGI Phenotype

PHENOTYPE: Mice homozygous for a conditional allele activated in immune cells exhibit osteopenia with enhanced osteoclastogenesis. Mice homozygous for a conditional allele activated in osteoblast exhibit ostepenia with impaired osteoblast numbers, increased adipogenesis and impaired glucose tolerance. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adcy7	G	T	8: 89,051,412 (GRCm39)	C844F	probably benign	Het
Afdn	T	C	17: 14,075,621 (GRCm39)	V945A	probably damaging	Het
Aimp2	T	C	5: 143,843,389 (GRCm39)	D67G	possibly damaging	Het
Aqp7	G	A	4: 41,035,510 (GRCm39)	T115I	probably benign	Het
Atp11b	G	T	3: 35,888,501 (GRCm39)	V924F	possibly damaging	Het
Atp8b1	C	T	18: 64,697,608 (GRCm39)	R412H	probably damaging	Het
Cfb	T	A	17: 35,080,770 (GRCm39)	T76S	probably benign	Het
Cmpk2	A	T	12: 26,519,766 (GRCm39)	H139L	probably benign	Het
Cypt4	T	C	9: 24,536,542 (GRCm39)	S11P	possibly damaging	Het
Dbx1	A	G	7: 49,282,519 (GRCm39)	F229L	probably damaging	Het
Dnah6	T	A	6: 72,998,210 (GRCm39)	M4071L	probably benign	Het
Dnah7a	A	G	1: 53,444,857 (GRCm39)	V3949A	possibly damaging	Het
Dnajc25	A	G	4: 59,017,716 (GRCm39)	E6G	probably damaging	Het
Dync2h1	C	A	9: 7,169,689 (GRCm39)	V263F	probably damaging	Het
Eno4	T	A	19: 58,959,088 (GRCm39)	D403E	probably benign	Het
Evi5l	C	T	8: 4,255,460 (GRCm39)	Q542*	probably null	Het
Fam135a	A	G	1: 24,068,134 (GRCm39)	S12P	probably benign	Het
Flnc	G	A	6: 29,441,591 (GRCm39)	A458T	probably benign	Het
Fnip1	T	C	11: 54,393,115 (GRCm39)	V517A	probably damaging	Het
Galc	G	T	12: 98,179,245 (GRCm39)	H361N	possibly damaging	Het
Gask1a	T	C	9: 121,794,754 (GRCm39)	F303L	probably damaging	Het
Gcnt1	T	A	19: 17,306,768 (GRCm39)	D319V	probably damaging	Het
Gm26996	T	C	6: 130,555,258 (GRCm39)		noncoding transcript	Het
Gm5321	A	T	7: 6,022,268 (GRCm39)		noncoding transcript	Het
Grin3b	T	C	10: 79,810,465 (GRCm39)	L657P	probably damaging	Het
Gstm5	T	C	3: 107,803,981 (GRCm39)	F54S	probably damaging	Het
Ilk	C	A	7: 105,390,857 (GRCm39)	L267I	probably benign	Het
Lifr	A	G	15: 7,214,285 (GRCm39)	Y713C	probably damaging	Het
Lnx2	A	T	5: 146,965,961 (GRCm39)	V386E	probably damaging	Het
Lrch1	T	C	14: 75,023,764 (GRCm39)	E587G	probably damaging	Het
Or10g3	C	T	14: 52,610,214 (GRCm39)	V99M	possibly damaging	Het
Osgin1	A	G	8: 120,171,728 (GRCm39)	*173W	probably null	Het
Pcdhga7	C	A	18: 37,849,736 (GRCm39)	P581H	probably damaging	Het
Pde4dip	A	T	3: 97,599,683 (GRCm39)	L2384*	probably null	Het
Phf12	T	A	11: 77,914,551 (GRCm39)	N115K	probably damaging	Het
Pmel	A	G	10: 128,552,170 (GRCm39)	T335A	probably damaging	Het
Polr3e	C	A	7: 120,539,912 (GRCm39)	T579K	possibly damaging	Het
Ptprc	A	G	1: 138,045,515 (GRCm39)	V164A	probably benign	Het
Rapsn	T	C	2: 90,866,269 (GRCm39)	F43S	probably damaging	Het
Rarb	T	A	14: 16,434,177 (GRCm38)	I334F	probably damaging	Het
Rev3l	T	C	10: 39,670,954 (GRCm39)	Y167H	probably damaging	Het
Rsf1	GC	GCGGCGGCGCC	7: 97,229,141 (GRCm39)		probably benign	Het
Slc35e2	C	T	4: 155,694,483 (GRCm39)	P10L	probably benign	Het
Slc5a10	C	T	11: 61,598,710 (GRCm39)	M223I	probably benign	Het
Slc7a11	C	G	3: 50,326,780 (GRCm39)	V494L	probably benign	Het
Slitrk6	C	T	14: 110,989,558 (GRCm39)	E50K	probably benign	Het
Smg8	A	G	11: 86,975,949 (GRCm39)	F544S	probably damaging	Het
Tnpo3	T	C	6: 29,571,063 (GRCm39)	M444V	possibly damaging	Het
Trav7d-4	G	A	14: 53,007,651 (GRCm39)	R48H	probably damaging	Het
Trim50	A	T	5: 135,382,516 (GRCm39)	T123S	probably damaging	Het
Trpc4ap	C	G	2: 155,512,955 (GRCm39)		probably null	Het
Ttn	T	A	2: 76,618,620 (GRCm39)	R14475S	probably damaging	Het
Uts2	A	T	4: 151,083,565 (GRCm39)	T59S	possibly damaging	Het
Vmn1r52	T	C	6: 90,156,232 (GRCm39)	S179P	possibly damaging	Het
Vmn2r116	A	G	17: 23,616,693 (GRCm39)	H537R	probably benign	Het
Vps16	C	T	2: 130,281,011 (GRCm39)	Q226*	probably null	Het
Zfhx2	T	C	14: 55,311,360 (GRCm39)	T445A	possibly damaging	Het
Zfp638	T	C	6: 83,906,054 (GRCm39)	V73A	probably damaging	Het

Other mutations in Rnf146

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01081:Rnf146	APN	10	29,223,856 (GRCm39)	missense	probably damaging	0.99
IGL02151:Rnf146	APN	10	29,223,349 (GRCm39)	missense	probably damaging	1.00
R1024:Rnf146	UTSW	10	29,223,092 (GRCm39)	nonsense	probably null
R1757:Rnf146	UTSW	10	29,223,475 (GRCm39)	missense	probably damaging	0.99
R1844:Rnf146	UTSW	10	29,223,720 (GRCm39)	missense	probably damaging	1.00
R1923:Rnf146	UTSW	10	29,223,715 (GRCm39)	missense	probably damaging	1.00
R3404:Rnf146	UTSW	10	29,223,424 (GRCm39)	missense	possibly damaging	0.91
R4060:Rnf146	UTSW	10	29,223,363 (GRCm39)	missense	probably damaging	1.00
R6742:Rnf146	UTSW	10	29,223,528 (GRCm39)	missense	probably damaging	1.00
R7459:Rnf146	UTSW	10	29,223,640 (GRCm39)	missense	probably benign	0.08
R8126:Rnf146	UTSW	10	29,223,372 (GRCm39)	missense	probably damaging	0.99
R8899:Rnf146	UTSW	10	29,223,754 (GRCm39)	missense	probably benign	0.04
R9037:Rnf146	UTSW	10	29,223,676 (GRCm39)	missense	probably benign	0.01
R9128:Rnf146	UTSW	10	29,223,539 (GRCm39)	missense	probably damaging	1.00
X0067:Rnf146	UTSW	10	29,223,784 (GRCm39)	missense	probably benign	0.09
Z1088:Rnf146	UTSW	10	29,223,568 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- TGGCTTGTCAAGAAAATCCTCAG -3'
(R):5'- AGCCGGCTTTGAATTTGCTG -3'

Sequencing Primer
(F):5'- TCCTCAGGAATCTCTTGTCGACAAAG -3'
(R):5'- CCGGCTTTGAATTTGCTGGTCTC -3'

Posted On

2016-11-09