Incidental Mutation 'R5689:Trav7d-4'
ID443593
Institutional Source Beutler Lab
Gene Symbol Trav7d-4
Ensembl Gene ENSMUSG00000094023
Gene NameT cell receptor alpha variable 7D-4
Synonyms
MMRRC Submission 043322-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.167) question?
Stock #R5689 (G1)
Quality Score225
Status Validated
Chromosome14
Chromosomal Location52769753-52770390 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) G to A at 52770194 bp
ZygosityHeterozygous
Amino Acid Change Arginine to Histidine at position 48 (R48H)
Ref Sequence ENSEMBL: ENSMUSP00000136110 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000178768]
Predicted Effect probably damaging
Transcript: ENSMUST00000178768
AA Change: R48H

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000136110
Gene: ENSMUSG00000094023
AA Change: R48H

DomainStartEndE-ValueType
signal peptide 1 20 N/A INTRINSIC
IGv 38 111 2.74e-10 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000197998
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.5%
  • 3x: 98.8%
  • 10x: 97.5%
  • 20x: 95.8%
Validation Efficiency 95% (63/66)
Allele List at MGI
Other mutations in this stock
Total: 58 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adcy7 G T 8: 88,324,784 C844F probably benign Het
Afdn T C 17: 13,855,359 V945A probably damaging Het
Aimp2 T C 5: 143,906,571 D67G possibly damaging Het
Aqp7 G A 4: 41,035,510 T115I probably benign Het
Atp11b G T 3: 35,834,352 V924F possibly damaging Het
Atp8b1 C T 18: 64,564,537 R412H probably damaging Het
Cfb T A 17: 34,861,794 T76S probably benign Het
Cmpk2 A T 12: 26,469,767 H139L probably benign Het
Cypt4 T C 9: 24,625,246 S11P possibly damaging Het
Dbx1 A G 7: 49,632,771 F229L probably damaging Het
Dnah6 T A 6: 73,021,227 M4071L probably benign Het
Dnah7a A G 1: 53,405,698 V3949A possibly damaging Het
Dnajc25 A G 4: 59,017,716 E6G probably damaging Het
Dync2h1 C A 9: 7,169,689 V263F probably damaging Het
Eno4 T A 19: 58,970,656 D403E probably benign Het
Evi5l C T 8: 4,205,460 Q542* probably null Het
Fam135a A G 1: 24,029,053 S12P probably benign Het
Fam198a T C 9: 121,965,688 F303L probably damaging Het
Flnc G A 6: 29,441,592 A458T probably benign Het
Fnip1 T C 11: 54,502,289 V517A probably damaging Het
Galc G T 12: 98,212,986 H361N possibly damaging Het
Gcnt1 T A 19: 17,329,404 D319V probably damaging Het
Gm26996 T C 6: 130,578,295 noncoding transcript Het
Gm5321 A T 7: 6,019,269 noncoding transcript Het
Grin3b T C 10: 79,974,631 L657P probably damaging Het
Gstm5 T C 3: 107,896,665 F54S probably damaging Het
Ilk C A 7: 105,741,650 L267I probably benign Het
Lifr A G 15: 7,184,804 Y713C probably damaging Het
Lnx2 A T 5: 147,029,151 V386E probably damaging Het
Lrch1 T C 14: 74,786,324 E587G probably damaging Het
Olfr1512 C T 14: 52,372,757 V99M possibly damaging Het
Osgin1 A G 8: 119,444,989 *173W probably null Het
Pcdhga7 C A 18: 37,716,683 P581H probably damaging Het
Pde4dip A T 3: 97,692,367 L2384* probably null Het
Phf12 T A 11: 78,023,725 N115K probably damaging Het
Pmel A G 10: 128,716,301 T335A probably damaging Het
Polr3e C A 7: 120,940,689 T579K possibly damaging Het
Ptprc A G 1: 138,117,777 V164A probably benign Het
Rapsn T C 2: 91,035,924 F43S probably damaging Het
Rarb T A 14: 16,434,177 I334F probably damaging Het
Rev3l T C 10: 39,794,958 Y167H probably damaging Het
Rnf146 T C 10: 29,347,804 T29A probably benign Het
Rsf1 GC GCGGCGGCGCC 7: 97,579,934 probably benign Het
Slc35e2 C T 4: 155,610,026 P10L probably benign Het
Slc5a10 C T 11: 61,707,884 M223I probably benign Het
Slc7a11 C G 3: 50,372,331 V494L probably benign Het
Slitrk6 C T 14: 110,752,126 E50K probably benign Het
Smg8 A G 11: 87,085,123 F544S probably damaging Het
Tnpo3 T C 6: 29,571,064 M444V possibly damaging Het
Trim50 A T 5: 135,353,662 T123S probably damaging Het
Trpc4ap C G 2: 155,671,035 probably null Het
Ttn T A 2: 76,788,276 R14475S probably damaging Het
Uts2 A T 4: 150,999,108 T59S possibly damaging Het
Vmn1r52 T C 6: 90,179,250 S179P possibly damaging Het
Vmn2r116 A G 17: 23,397,719 H537R probably benign Het
Vps16 C T 2: 130,439,091 Q226* probably null Het
Zfhx2 T C 14: 55,073,903 T445A possibly damaging Het
Zfp638 T C 6: 83,929,072 V73A probably damaging Het
Other mutations in Trav7d-4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02997:Trav7d-4 APN 14 52770256 missense probably damaging 0.97
IGL03243:Trav7d-4 APN 14 52770098 splice site probably benign
IGL03014:Trav7d-4 UTSW 14 52769896 missense unknown
R2964:Trav7d-4 UTSW 14 52770127 nonsense probably null
R2966:Trav7d-4 UTSW 14 52770127 nonsense probably null
R3803:Trav7d-4 UTSW 14 52770118 nonsense probably null
R6408:Trav7d-4 UTSW 14 52770167 missense probably damaging 0.98
R6905:Trav7d-4 UTSW 14 52770313 missense possibly damaging 0.93
Z1176:Trav7d-4 UTSW 14 52770113 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGTCTGCTCCAGGCTAATGG -3'
(R):5'- CACTAGCTGCACAGAAGTAGAG -3'

Sequencing Primer
(F):5'- TCTGCTCCAGGCTAATGGTACAAAC -3'
(R):5'- AGAGCGGAGTCACTGGGC -3'
Posted On2016-11-09