Incidental Mutation 'R5694:Sos2'
| ID |
443836 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Sos2
|
| Ensembl Gene |
ENSMUSG00000034801 |
| Gene Name |
SOS Ras/Rho guanine nucleotide exchange factor 2 |
| Synonyms |
|
| MMRRC Submission |
043325-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R5694 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
12 |
| Chromosomal Location |
69583762-69681852 bp(-) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to A
at 69590915 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Arginine to Serine
at position 1007
(R1007S)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000138589
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000035773]
[ENSMUST00000182396]
[ENSMUST00000183277]
|
| AlphaFold |
Q02384 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000035773
AA Change: R1039S
PolyPhen 2
Score 0.505 (Sensitivity: 0.88; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000044866
Gene: ENSMUSG00000034801
AA Change: R1039S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Histone
|
54 |
169 |
3.7e-13 |
PFAM |
|
RhoGEF
|
203 |
388 |
1.98e-35 |
SMART |
|
PH
|
443 |
547 |
1.54e-14 |
SMART |
|
RasGEFN
|
595 |
740 |
5.8e-52 |
SMART |
|
RasGEF
|
775 |
1019 |
2.51e-92 |
SMART |
|
low complexity region
|
1079 |
1099 |
N/A |
INTRINSIC |
|
low complexity region
|
1144 |
1152 |
N/A |
INTRINSIC |
|
low complexity region
|
1173 |
1192 |
N/A |
INTRINSIC |
|
low complexity region
|
1200 |
1225 |
N/A |
INTRINSIC |
|
low complexity region
|
1254 |
1269 |
N/A |
INTRINSIC |
|
low complexity region
|
1276 |
1292 |
N/A |
INTRINSIC |
|
low complexity region
|
1301 |
1309 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000083985
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182123
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000182396
AA Change: R1007S
PolyPhen 2
Score 0.961 (Sensitivity: 0.78; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000138589
Gene: ENSMUSG00000034801
AA Change: R1007S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Histone
|
97 |
169 |
1e-9 |
PFAM |
|
Pfam:RhoGEF
|
203 |
344 |
1.6e-12 |
PFAM |
|
PH
|
410 |
514 |
1.54e-14 |
SMART |
|
RasGEFN
|
562 |
707 |
5.8e-52 |
SMART |
|
RasGEF
|
742 |
986 |
2.51e-92 |
SMART |
|
low complexity region
|
1046 |
1066 |
N/A |
INTRINSIC |
|
low complexity region
|
1111 |
1119 |
N/A |
INTRINSIC |
|
low complexity region
|
1140 |
1159 |
N/A |
INTRINSIC |
|
low complexity region
|
1167 |
1192 |
N/A |
INTRINSIC |
|
low complexity region
|
1221 |
1236 |
N/A |
INTRINSIC |
|
low complexity region
|
1243 |
1259 |
N/A |
INTRINSIC |
|
low complexity region
|
1268 |
1276 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182646
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000182838
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000183277
AA Change: R1040S
PolyPhen 2
Score 0.921 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000138793
Gene: ENSMUSG00000034801
AA Change: R1040S
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Histone
|
97 |
169 |
8.9e-11 |
PFAM |
|
RhoGEF
|
203 |
388 |
1.98e-35 |
SMART |
|
PH
|
443 |
547 |
1.54e-14 |
SMART |
|
RasGEFN
|
595 |
740 |
5.8e-52 |
SMART |
|
RasGEF
|
775 |
1019 |
2.51e-92 |
SMART |
|
low complexity region
|
1079 |
1099 |
N/A |
INTRINSIC |
|
low complexity region
|
1144 |
1152 |
N/A |
INTRINSIC |
|
low complexity region
|
1173 |
1192 |
N/A |
INTRINSIC |
|
low complexity region
|
1200 |
1225 |
N/A |
INTRINSIC |
|
low complexity region
|
1254 |
1269 |
N/A |
INTRINSIC |
|
low complexity region
|
1276 |
1292 |
N/A |
INTRINSIC |
|
low complexity region
|
1301 |
1309 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.5%
- 20x: 95.9%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a regulatory protein that is involved in the positive regulation of ras proteins. Mutations in this gene are associated with Noonan Syndrome-9. [provided by RefSeq, Jul 2016]
PHENOTYPE: Mice homozygous for a targeted null mutation exhibit no discernable phenotype; mice are viable and fertile with normal embryonic and adult histopathology. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 52 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcc9 |
A |
T |
6: 142,600,947 (GRCm38) |
I1353N |
probably damaging |
Het |
| Actr1a |
C |
A |
19: 46,395,718 (GRCm38) |
|
probably benign |
Het |
| Adamts14 |
A |
T |
10: 61,229,652 (GRCm38) |
M356K |
probably benign |
Het |
| Adamtsl2 |
A |
G |
2: 27,081,724 (GRCm38) |
H7R |
probably benign |
Het |
| Angptl2 |
T |
C |
2: 33,228,616 (GRCm38) |
V134A |
probably damaging |
Het |
| Armc8 |
A |
G |
9: 99,496,149 (GRCm38) |
|
probably null |
Het |
| Astn2 |
T |
C |
4: 65,950,138 (GRCm38) |
D488G |
probably damaging |
Het |
| Cat |
A |
T |
2: 103,472,994 (GRCm38) |
V146E |
probably damaging |
Het |
| Dmxl1 |
T |
C |
18: 49,894,257 (GRCm38) |
V2144A |
probably damaging |
Het |
| Efcab5 |
T |
G |
11: 77,188,875 (GRCm38) |
D15A |
probably benign |
Het |
| Epha10 |
C |
T |
4: 124,902,653 (GRCm38) |
A385V |
unknown |
Het |
| Erg |
C |
A |
16: 95,361,031 (GRCm38) |
E388D |
probably benign |
Het |
| Fam126a |
C |
A |
5: 23,991,796 (GRCm38) |
L31F |
probably damaging |
Het |
| Fbxo10 |
T |
A |
4: 45,035,970 (GRCm38) |
I931F |
probably damaging |
Het |
| Frem1 |
A |
G |
4: 82,994,116 (GRCm38) |
L673P |
probably damaging |
Het |
| Gm4922 |
A |
C |
10: 18,784,287 (GRCm38) |
I229S |
possibly damaging |
Het |
| Gnptab |
T |
A |
10: 88,414,486 (GRCm38) |
D153E |
probably benign |
Het |
| Htr7 |
T |
C |
19: 36,057,121 (GRCm38) |
M45V |
probably benign |
Het |
| Igkv4-51 |
C |
T |
6: 69,681,927 (GRCm38) |
V5M |
probably damaging |
Het |
| Ints7 |
G |
A |
1: 191,586,618 (GRCm38) |
E156K |
probably damaging |
Het |
| Map3k21 |
A |
G |
8: 125,944,768 (GRCm38) |
T932A |
probably benign |
Het |
| Mapk1 |
T |
G |
16: 17,018,469 (GRCm38) |
D160E |
probably benign |
Het |
| Mast4 |
A |
T |
13: 102,774,193 (GRCm38) |
Y479* |
probably null |
Het |
| Meig1 |
T |
A |
2: 3,411,962 (GRCm38) |
K7N |
probably damaging |
Het |
| Mthfd1l |
T |
A |
10: 4,035,239 (GRCm38) |
D548E |
possibly damaging |
Het |
| Myo16 |
A |
G |
8: 10,569,606 (GRCm38) |
R1386G |
probably benign |
Het |
| Nphs2 |
T |
C |
1: 156,326,037 (GRCm38) |
S353P |
probably benign |
Het |
| Olfr533 |
T |
C |
7: 140,466,731 (GRCm38) |
F177L |
probably benign |
Het |
| Olfr906 |
T |
A |
9: 38,488,236 (GRCm38) |
I69K |
probably damaging |
Het |
| Pcdha9 |
G |
T |
18: 36,998,372 (GRCm38) |
V165L |
probably benign |
Het |
| Pde3a |
T |
A |
6: 141,250,502 (GRCm38) |
S305T |
possibly damaging |
Het |
| Phf14 |
C |
A |
6: 11,990,125 (GRCm38) |
L718I |
possibly damaging |
Het |
| Plscr5 |
A |
T |
9: 92,205,511 (GRCm38) |
K178* |
probably null |
Het |
| Rab44 |
T |
C |
17: 29,140,500 (GRCm38) |
L554P |
probably damaging |
Het |
| Rab44 |
T |
A |
17: 29,145,966 (GRCm38) |
M645K |
unknown |
Het |
| Rnf222 |
A |
G |
11: 68,892,897 (GRCm38) |
T97A |
probably benign |
Het |
| Rnpepl1 |
T |
C |
1: 92,918,941 (GRCm38) |
S522P |
probably benign |
Het |
| Serinc5 |
A |
G |
13: 92,688,794 (GRCm38) |
I244V |
probably benign |
Het |
| Serpinb10 |
A |
T |
1: 107,535,457 (GRCm38) |
|
probably null |
Het |
| Siglech |
T |
A |
7: 55,768,656 (GRCm38) |
F124Y |
probably damaging |
Het |
| Smarcc2 |
A |
T |
10: 128,484,127 (GRCm38) |
I790L |
probably benign |
Het |
| Stk4 |
C |
T |
2: 164,100,564 (GRCm38) |
T372M |
possibly damaging |
Het |
| Tbc1d10c |
A |
T |
19: 4,184,964 (GRCm38) |
L366H |
probably damaging |
Het |
| Tor4a |
T |
C |
2: 25,194,920 (GRCm38) |
T324A |
probably benign |
Het |
| Trim12a |
C |
A |
7: 104,307,243 (GRCm38) |
C30F |
probably damaging |
Het |
| Ttll3 |
G |
A |
6: 113,399,708 (GRCm38) |
V350M |
probably damaging |
Het |
| Uggt1 |
A |
T |
1: 36,179,656 (GRCm38) |
D63E |
probably damaging |
Het |
| Unc5b |
G |
A |
10: 60,773,747 (GRCm38) |
T590I |
probably benign |
Het |
| Wee1 |
TCCCC |
TCCC |
7: 110,124,569 (GRCm38) |
|
probably null |
Het |
| Wls |
A |
C |
3: 159,839,987 (GRCm38) |
I16L |
probably benign |
Het |
| Zfp101 |
T |
C |
17: 33,380,945 (GRCm38) |
I612M |
probably benign |
Het |
| Zfp677 |
C |
A |
17: 21,397,759 (GRCm38) |
D359E |
probably damaging |
Het |
|
| Other mutations in Sos2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01138:Sos2
|
APN |
12 |
69,616,849 (GRCm38) |
splice site |
probably benign |
|
|
IGL01348:Sos2
|
APN |
12 |
69,618,092 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL01360:Sos2
|
APN |
12 |
69,590,800 (GRCm38) |
missense |
probably benign |
0.00 |
|
IGL01586:Sos2
|
APN |
12 |
69,607,398 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01721:Sos2
|
APN |
12 |
69,603,867 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL02024:Sos2
|
APN |
12 |
69,618,048 (GRCm38) |
splice site |
probably benign |
|
|
IGL02347:Sos2
|
APN |
12 |
69,596,746 (GRCm38) |
missense |
probably benign |
|
|
IGL02419:Sos2
|
APN |
12 |
69,616,990 (GRCm38) |
missense |
probably benign |
|
|
IGL02684:Sos2
|
APN |
12 |
69,596,666 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL02719:Sos2
|
APN |
12 |
69,617,184 (GRCm38) |
missense |
probably benign |
0.00 |
|
IGL03099:Sos2
|
APN |
12 |
69,616,359 (GRCm38) |
missense |
probably damaging |
1.00 |
|
Bechamel
|
UTSW |
12 |
69,603,553 (GRCm38) |
missense |
probably damaging |
1.00 |
|
sauce
|
UTSW |
12 |
69,596,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
G1citation:Sos2
|
UTSW |
12 |
69,650,649 (GRCm38) |
missense |
probably damaging |
1.00 |
|
PIT4131001:Sos2
|
UTSW |
12 |
69,618,077 (GRCm38) |
missense |
probably benign |
|
|
R0038:Sos2
|
UTSW |
12 |
69,596,693 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0233:Sos2
|
UTSW |
12 |
69,617,330 (GRCm38) |
missense |
probably benign |
0.00 |
|
R0233:Sos2
|
UTSW |
12 |
69,617,330 (GRCm38) |
missense |
probably benign |
0.00 |
|
R0326:Sos2
|
UTSW |
12 |
69,635,685 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1386:Sos2
|
UTSW |
12 |
69,614,658 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1472:Sos2
|
UTSW |
12 |
69,585,316 (GRCm38) |
splice site |
probably null |
|
|
R1534:Sos2
|
UTSW |
12 |
69,616,955 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1861:Sos2
|
UTSW |
12 |
69,617,363 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1934:Sos2
|
UTSW |
12 |
69,648,541 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R1964:Sos2
|
UTSW |
12 |
69,616,862 (GRCm38) |
missense |
possibly damaging |
0.51 |
|
R2402:Sos2
|
UTSW |
12 |
69,596,799 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R2516:Sos2
|
UTSW |
12 |
69,650,659 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R2571:Sos2
|
UTSW |
12 |
69,635,718 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R3423:Sos2
|
UTSW |
12 |
69,603,553 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4435:Sos2
|
UTSW |
12 |
69,614,699 (GRCm38) |
missense |
possibly damaging |
0.79 |
|
R4508:Sos2
|
UTSW |
12 |
69,635,661 (GRCm38) |
nonsense |
probably null |
|
|
R4595:Sos2
|
UTSW |
12 |
69,616,889 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4606:Sos2
|
UTSW |
12 |
69,614,606 (GRCm38) |
intron |
probably benign |
|
|
R4691:Sos2
|
UTSW |
12 |
69,616,328 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4716:Sos2
|
UTSW |
12 |
69,607,371 (GRCm38) |
missense |
probably benign |
0.04 |
|
R4863:Sos2
|
UTSW |
12 |
69,640,154 (GRCm38) |
missense |
probably benign |
0.04 |
|
R5179:Sos2
|
UTSW |
12 |
69,650,728 (GRCm38) |
nonsense |
probably null |
|
|
R5319:Sos2
|
UTSW |
12 |
69,627,284 (GRCm38) |
missense |
probably benign |
0.22 |
|
R5877:Sos2
|
UTSW |
12 |
69,596,795 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R6363:Sos2
|
UTSW |
12 |
69,632,111 (GRCm38) |
missense |
probably benign |
0.00 |
|
R6465:Sos2
|
UTSW |
12 |
69,596,775 (GRCm38) |
missense |
probably benign |
0.01 |
|
R6817:Sos2
|
UTSW |
12 |
69,618,161 (GRCm38) |
missense |
probably benign |
0.32 |
|
R6822:Sos2
|
UTSW |
12 |
69,650,649 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7015:Sos2
|
UTSW |
12 |
69,585,235 (GRCm38) |
missense |
probably benign |
0.43 |
|
R7562:Sos2
|
UTSW |
12 |
69,635,638 (GRCm38) |
missense |
probably benign |
0.12 |
|
R7570:Sos2
|
UTSW |
12 |
69,590,880 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R7757:Sos2
|
UTSW |
12 |
69,648,585 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R7975:Sos2
|
UTSW |
12 |
69,593,040 (GRCm38) |
missense |
probably benign |
0.20 |
|
R8079:Sos2
|
UTSW |
12 |
69,607,215 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8194:Sos2
|
UTSW |
12 |
69,598,824 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8756:Sos2
|
UTSW |
12 |
69,648,536 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R8775:Sos2
|
UTSW |
12 |
69,617,232 (GRCm38) |
missense |
probably benign |
0.02 |
|
R8775-TAIL:Sos2
|
UTSW |
12 |
69,617,232 (GRCm38) |
missense |
probably benign |
0.02 |
|
R9136:Sos2
|
UTSW |
12 |
69,586,672 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R9245:Sos2
|
UTSW |
12 |
69,648,465 (GRCm38) |
missense |
probably damaging |
1.00 |
|
Z1177:Sos2
|
UTSW |
12 |
69,585,592 (GRCm38) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- CATACTTACCACAGGAGCTATTGAG -3'
(R):5'- ACAAGAAATGCTACAGGCTGTCC -3'
Sequencing Primer
(F):5'- TCTAGAAACACGCTGTGGTC -3'
(R):5'- ACAGGCTGTCCTTGAAGATC -3'
|
| Posted On |
2016-11-09 |
Incidental Mutation