Incidental Mutation 'R5737:Slc6a3'
| ID |
444592 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Slc6a3
|
| Ensembl Gene |
ENSMUSG00000021609 |
| Gene Name |
solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 |
| Synonyms |
Dat1, DAT |
| MMRRC Submission |
043195-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R5737 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
13 |
| Chromosomal Location |
73536747-73578672 bp(+) (GRCm38) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to C
at 73544804 bp (GRCm38)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Asparagine to Threonine
at position 181
(N181T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000022100
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000022100]
|
| AlphaFold |
Q61327 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000022100
AA Change: N181T
PolyPhen 2
Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000022100
Gene: ENSMUSG00000021609
AA Change: N181T
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SNF
|
60 |
582 |
8.1e-237 |
PFAM |
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 97.1%
- 20x: 94.9%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a dopamine transporter which is a member of the sodium- and chloride-dependent neurotransmitter transporter family. The 3' UTR of this gene contains a 40 bp tandem repeat, referred to as a variable number tandem repeat or VNTR, which can be present in 3 to 11 copies. Variation in the number of repeats is associated with idiopathic epilepsy, attention-deficit hyperactivity disorder, dependence on alcohol and cocaine, susceptibility to Parkinson disease and protection against nicotine dependence.[provided by RefSeq, Nov 2009]
PHENOTYPE: Homozygotes for targeted null mutations exhibit dwarfism, hyperactivity (especially in a novel environment), 5-fold higher extracellular dopamine levels, impaired spatial cognitive function, anterior pituitary hypoplasia, and failure to lactate. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 32 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4833439L19Rik |
A |
G |
13: 54,559,242 (GRCm38) |
V78A |
probably damaging |
Het |
| Albfm1 |
G |
T |
5: 90,572,783 (GRCm38) |
C271F |
probably damaging |
Het |
| Aldh1l2 |
T |
A |
10: 83,520,325 (GRCm38) |
D67V |
probably damaging |
Het |
| Ankfy1 |
T |
A |
11: 72,732,274 (GRCm38) |
D253E |
probably damaging |
Het |
| Arhgap42 |
T |
C |
9: 9,059,068 (GRCm38) |
K159R |
probably damaging |
Het |
| Atrnl1 |
C |
T |
19: 57,777,888 (GRCm38) |
A1219V |
possibly damaging |
Het |
| Cacna1c |
C |
T |
6: 118,741,932 (GRCm38) |
V386I |
probably damaging |
Het |
| Cacna2d2 |
A |
G |
9: 107,526,747 (GRCm38) |
T1015A |
possibly damaging |
Het |
| Cadps2 |
T |
C |
6: 23,328,805 (GRCm38) |
M999V |
probably benign |
Het |
| Ccer1 |
A |
T |
10: 97,694,684 (GRCm38) |
H403L |
possibly damaging |
Het |
| Cubn |
A |
T |
2: 13,388,891 (GRCm38) |
I1433N |
probably damaging |
Het |
| Dcbld2 |
T |
C |
16: 58,460,985 (GRCm38) |
V531A |
probably damaging |
Het |
| Dnah11 |
A |
G |
12: 118,192,390 (GRCm38) |
V175A |
probably benign |
Het |
| Dnah3 |
T |
C |
7: 120,059,198 (GRCm38) |
K920R |
probably benign |
Het |
| Dnah8 |
G |
A |
17: 30,748,568 (GRCm38) |
D2585N |
probably benign |
Het |
| Dscaml1 |
C |
T |
9: 45,745,185 (GRCm38) |
R1608C |
probably damaging |
Het |
| Gtf3c2 |
A |
G |
5: 31,168,249 (GRCm38) |
|
probably null |
Het |
| Heca |
A |
T |
10: 17,915,714 (GRCm38) |
M198K |
possibly damaging |
Het |
| Igkv8-24 |
A |
T |
6: 70,217,138 (GRCm38) |
S29T |
probably benign |
Het |
| Lipo2 |
A |
C |
19: 33,721,696 (GRCm38) |
N311K |
probably damaging |
Het |
| Lmo7 |
T |
G |
14: 101,887,236 (GRCm38) |
I266S |
probably damaging |
Het |
| Naip2 |
T |
A |
13: 100,161,854 (GRCm38) |
E558V |
probably benign |
Het |
| Nelfa |
T |
A |
5: 33,899,113 (GRCm38) |
|
probably null |
Het |
| Phka2 |
ACC |
AC |
X: 160,559,866 (GRCm38) |
|
probably null |
Het |
| Psmg2 |
T |
C |
18: 67,646,037 (GRCm38) |
S92P |
possibly damaging |
Het |
| Rasa2 |
C |
T |
9: 96,570,665 (GRCm38) |
|
probably null |
Het |
| Tdrd5 |
A |
G |
1: 156,300,724 (GRCm38) |
M136T |
probably benign |
Het |
| Tmem178b |
A |
C |
6: 40,245,641 (GRCm38) |
M97L |
possibly damaging |
Het |
| Tnfaip8l1 |
A |
G |
17: 56,171,950 (GRCm38) |
D80G |
probably benign |
Het |
| Tomt |
T |
C |
7: 101,900,317 (GRCm38) |
T255A |
probably benign |
Het |
| Uqcc5 |
A |
G |
14: 31,128,719 (GRCm38) |
I22T |
probably benign |
Het |
| Vmn2r26 |
G |
T |
6: 124,039,449 (GRCm38) |
V291F |
probably benign |
Het |
|
| Other mutations in Slc6a3 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00773:Slc6a3
|
APN |
13 |
73,544,741 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL01524:Slc6a3
|
APN |
13 |
73,538,549 (GRCm38) |
missense |
probably benign |
0.01 |
|
IGL02015:Slc6a3
|
APN |
13 |
73,544,714 (GRCm38) |
missense |
possibly damaging |
0.60 |
|
IGL03008:Slc6a3
|
APN |
13 |
73,558,285 (GRCm38) |
critical splice donor site |
probably null |
|
|
IGL03029:Slc6a3
|
APN |
13 |
73,538,697 (GRCm38) |
missense |
probably damaging |
1.00 |
|
IGL03064:Slc6a3
|
APN |
13 |
73,571,466 (GRCm38) |
missense |
probably damaging |
0.99 |
|
IGL03272:Slc6a3
|
APN |
13 |
73,540,929 (GRCm38) |
missense |
probably damaging |
0.98 |
|
IGL03294:Slc6a3
|
APN |
13 |
73,557,181 (GRCm38) |
critical splice donor site |
probably null |
|
|
IGL03345:Slc6a3
|
APN |
13 |
73,571,514 (GRCm38) |
missense |
probably benign |
|
|
IGL03410:Slc6a3
|
APN |
13 |
73,538,657 (GRCm38) |
missense |
probably benign |
0.03 |
|
disney
|
UTSW |
13 |
73,544,884 (GRCm38) |
missense |
probably benign |
|
|
dopey
|
UTSW |
13 |
73,560,959 (GRCm38) |
missense |
probably damaging |
1.00 |
|
Dopey2
|
UTSW |
13 |
73,544,817 (GRCm38) |
missense |
probably damaging |
1.00 |
|
Stiff
|
UTSW |
13 |
73,557,050 (GRCm38) |
missense |
possibly damaging |
0.85 |
|
PIT4382001:Slc6a3
|
UTSW |
13 |
73,571,523 (GRCm38) |
missense |
probably benign |
0.35 |
|
R0024:Slc6a3
|
UTSW |
13 |
73,540,837 (GRCm38) |
splice site |
probably benign |
|
|
R0125:Slc6a3
|
UTSW |
13 |
73,569,979 (GRCm38) |
splice site |
probably benign |
|
|
R0180:Slc6a3
|
UTSW |
13 |
73,562,336 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0288:Slc6a3
|
UTSW |
13 |
73,560,928 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0322:Slc6a3
|
UTSW |
13 |
73,560,926 (GRCm38) |
missense |
possibly damaging |
0.61 |
|
R0349:Slc6a3
|
UTSW |
13 |
73,567,557 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R0411:Slc6a3
|
UTSW |
13 |
73,557,050 (GRCm38) |
missense |
possibly damaging |
0.85 |
|
R0594:Slc6a3
|
UTSW |
13 |
73,538,642 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R0680:Slc6a3
|
UTSW |
13 |
73,538,727 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R1099:Slc6a3
|
UTSW |
13 |
73,567,641 (GRCm38) |
missense |
probably benign |
0.21 |
|
R1109:Slc6a3
|
UTSW |
13 |
73,557,080 (GRCm38) |
missense |
probably benign |
0.00 |
|
R1791:Slc6a3
|
UTSW |
13 |
73,566,292 (GRCm38) |
missense |
possibly damaging |
0.82 |
|
R3916:Slc6a3
|
UTSW |
13 |
73,562,308 (GRCm38) |
missense |
probably benign |
0.00 |
|
R4279:Slc6a3
|
UTSW |
13 |
73,544,834 (GRCm38) |
missense |
possibly damaging |
0.90 |
|
R4368:Slc6a3
|
UTSW |
13 |
73,560,912 (GRCm38) |
nonsense |
probably null |
|
|
R4520:Slc6a3
|
UTSW |
13 |
73,540,856 (GRCm38) |
missense |
possibly damaging |
0.95 |
|
R4666:Slc6a3
|
UTSW |
13 |
73,538,581 (GRCm38) |
missense |
possibly damaging |
0.47 |
|
R4675:Slc6a3
|
UTSW |
13 |
73,544,817 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R4716:Slc6a3
|
UTSW |
13 |
73,557,076 (GRCm38) |
missense |
probably benign |
0.04 |
|
R5243:Slc6a3
|
UTSW |
13 |
73,571,451 (GRCm38) |
missense |
possibly damaging |
0.61 |
|
R5355:Slc6a3
|
UTSW |
13 |
73,560,959 (GRCm38) |
missense |
probably damaging |
1.00 |
|
R5681:Slc6a3
|
UTSW |
13 |
73,538,735 (GRCm38) |
missense |
probably damaging |
0.99 |
|
R6142:Slc6a3
|
UTSW |
13 |
73,544,783 (GRCm38) |
missense |
probably benign |
0.00 |
|
R6471:Slc6a3
|
UTSW |
13 |
73,544,884 (GRCm38) |
missense |
probably benign |
|
|
R7168:Slc6a3
|
UTSW |
13 |
73,571,472 (GRCm38) |
missense |
probably benign |
0.00 |
|
R7403:Slc6a3
|
UTSW |
13 |
73,562,427 (GRCm38) |
critical splice donor site |
probably null |
|
|
R8282:Slc6a3
|
UTSW |
13 |
73,557,081 (GRCm38) |
missense |
probably benign |
0.01 |
|
R8359:Slc6a3
|
UTSW |
13 |
73,544,883 (GRCm38) |
missense |
probably benign |
|
|
R8446:Slc6a3
|
UTSW |
13 |
73,571,555 (GRCm38) |
missense |
possibly damaging |
0.67 |
|
R8979:Slc6a3
|
UTSW |
13 |
73,567,601 (GRCm38) |
missense |
probably benign |
0.20 |
|
R9051:Slc6a3
|
UTSW |
13 |
73,569,912 (GRCm38) |
nonsense |
probably null |
|
|
R9377:Slc6a3
|
UTSW |
13 |
73,544,847 (GRCm38) |
missense |
probably benign |
0.07 |
|
| Predicted Primers |
PCR Primer
(F):5'- AGTGCAAGGGATGTCAATGC -3'
(R):5'- TCCTCTGTGTCGAAACTGAGTTC -3'
Sequencing Primer
(F):5'- GATGTCAATGCACCAGCTCAGG -3'
(R):5'- TGTGTCGAAACTGAGTTCCCAGAC -3'
|
| Posted On |
2016-11-21 |
Incidental Mutation