Mutagenetix > Incidental Mutation

Incidental Mutation 'R5772:Lrrc24'

445468

Institutional Source

Beutler Lab

Gene Symbol

Lrrc24

Ensembl Gene

ENSMUSG00000033707

Gene Name

leucine rich repeat containing 24

Synonyms

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.070) question?

Stock #

R5772 (G1)

Quality Score

176

Status

Validated

Chromosome

Chromosomal Location

76599476-76606373 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 76606910 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 162 (E162G)

Ref Sequence

ENSEMBL: ENSMUSP00000039910 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000036176] [ENSMUST00000036247] [ENSMUST00000049956] [ENSMUST00000077821] [ENSMUST00000228990]

AlphaFold

Q8BHA1

Predicted Effect

probably benign
Transcript: ENSMUST00000036176

SMART Domains

Protein: ENSMUSP00000036697
Gene: ENSMUSG00000033697

Domain	Start	End	E-Value	Type
WW	27	60	1.64e0	SMART
WW	66	99	5.41e-1	SMART
low complexity region	125	138	N/A	INTRINSIC
low complexity region	304	318	N/A	INTRINSIC
Pfam:MyTH4	759	904	2.3e-32	PFAM
RhoGAP	932	1105	5.9e-28	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000036247
AA Change: E162G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000039910
Gene: ENSMUSG00000116138
AA Change: E162G

Domain	Start	End	E-Value	Type
Pfam:DUF4505	31	209	5.4e-84	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000049956

SMART Domains

Protein: ENSMUSP00000061906
Gene: ENSMUSG00000033707

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
LRRNT	30	62	1.04e-2	SMART
LRR	61	80	3.18e2	SMART
LRR_TYP	81	104	2.99e-4	SMART
LRR	106	128	3.87e1	SMART
LRR_TYP	129	152	8.22e-2	SMART
LRR_TYP	153	176	5.06e-2	SMART
LRR	177	200	2.02e-1	SMART
LRRCT	212	266	2e-10	SMART
IGc2	280	360	1.02e-9	SMART
transmembrane domain	409	431	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000077821

SMART Domains

Protein: ENSMUSP00000076993
Gene: ENSMUSG00000033697

Domain	Start	End	E-Value	Type
WW	27	60	1.64e0	SMART
WW	66	99	5.41e-1	SMART
low complexity region	125	138	N/A	INTRINSIC
low complexity region	304	318	N/A	INTRINSIC
Pfam:MyTH4	756	874	3.3e-25	PFAM
RhoGAP	901	1074	5.9e-28	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146725

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146855

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000176724

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000229507

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000230372

Predicted Effect

probably benign
Transcript: ENSMUST00000228990

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000230559

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000231059

Meta Mutation Damage Score

0.1387

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 95.9%

Validation Efficiency

98% (64/65)

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932416K20Rik	G	A	8: 105,524,271 (GRCm39)		noncoding transcript	Het
Abcg8	A	T	17: 84,994,127 (GRCm39)	E48V	probably damaging	Het
Afap1l2	T	C	19: 56,911,406 (GRCm39)	T289A	probably benign	Het
Atf6	T	A	1: 170,574,758 (GRCm39)	D560V	probably damaging	Het
Bcl2l14	A	T	6: 134,404,362 (GRCm39)	K183N	probably damaging	Het
Carmil3	T	C	14: 55,730,696 (GRCm39)	L52P	probably damaging	Het
Cct3	T	A	3: 88,208,274 (GRCm39)	N61K	probably damaging	Het
Col18a1	A	G	10: 77,002,177 (GRCm39)	V10A	unknown	Het
Col26a1	G	A	5: 136,876,420 (GRCm39)	Q67*	probably null	Het
Cyp2d34	T	C	15: 82,501,341 (GRCm39)	D329G	probably null	Het
Dchs1	T	A	7: 105,422,247 (GRCm39)	I58F	probably damaging	Het
Ddx60	T	C	8: 62,401,931 (GRCm39)	L269P	probably damaging	Het
Dis3l2	G	A	1: 86,806,154 (GRCm39)	G325D	probably damaging	Het
Dync1h1	A	T	12: 110,612,707 (GRCm39)	K2861*	probably null	Het
Ednra	A	G	8: 78,401,696 (GRCm39)	I198T	possibly damaging	Het
Ep300	T	C	15: 81,524,115 (GRCm39)		probably benign	Het
Fam120a	G	A	13: 49,034,409 (GRCm39)	P1068S	probably benign	Het
Fsip2	A	T	2: 82,815,084 (GRCm39)	M3606L	probably benign	Het
Garre1	A	T	7: 33,953,413 (GRCm39)	W238R	probably damaging	Het
Gm7713	T	C	15: 59,866,492 (GRCm39)		noncoding transcript	Het
Gprin3	A	T	6: 59,331,398 (GRCm39)	V303D	possibly damaging	Het
Hmcn1	A	T	1: 150,570,629 (GRCm39)	V2178D	possibly damaging	Het
Hoxa11	A	G	6: 52,222,380 (GRCm39)	V107A	possibly damaging	Het
Iqub	C	A	6: 24,454,250 (GRCm39)	M544I	possibly damaging	Het
Itgb4	A	T	11: 115,879,258 (GRCm39)		probably benign	Het
Itpkb	A	G	1: 180,161,818 (GRCm39)		probably benign	Het
Kalrn	A	T	16: 33,796,190 (GRCm39)	V1195E	probably damaging	Het
Kif12	C	A	4: 63,084,178 (GRCm39)	R608M	probably damaging	Het
Lcorl	A	T	5: 45,952,709 (GRCm39)		probably null	Het
Med6	A	G	12: 81,626,418 (GRCm39)	S119P	probably damaging	Het
Mmab	A	C	5: 114,574,775 (GRCm39)	L166R	probably damaging	Het
Myef2l	A	G	3: 10,153,566 (GRCm39)	R112G	probably damaging	Het
Nom1	A	G	5: 29,651,873 (GRCm39)	K737R	possibly damaging	Het
Obscn	T	C	11: 58,946,970 (GRCm39)	S4352G	probably damaging	Het
Or10ag60	A	T	2: 87,438,517 (GRCm39)	T262S	probably benign	Het
Or2w25	T	A	11: 59,504,712 (GRCm39)	D307E	probably benign	Het
Or4k35	A	T	2: 111,100,057 (GRCm39)	Y218*	probably null	Het
Or6d12	A	C	6: 116,492,912 (GRCm39)	D58A	possibly damaging	Het
Pdzrn3	G	A	6: 101,149,275 (GRCm39)	S351L	probably benign	Het
Pdzrn4	A	T	15: 92,655,562 (GRCm39)	E485V	probably damaging	Het
Prkdc	T	A	16: 15,597,252 (GRCm39)	I2804K	possibly damaging	Het
Psg28	A	G	7: 18,164,640 (GRCm39)	L24P	probably damaging	Het
Resp18	A	G	1: 75,250,644 (GRCm39)	V145A	possibly damaging	Het
Rgl3	T	C	9: 21,892,908 (GRCm39)	M259V	probably benign	Het
Rhot2	A	T	17: 26,058,781 (GRCm39)	S540T	probably benign	Het
Ring1	T	C	17: 34,241,282 (GRCm39)	Y278C	possibly damaging	Het
Rpn2	A	G	2: 157,137,265 (GRCm39)	Y216C	probably damaging	Het
Scgb2b18	G	A	7: 32,873,255 (GRCm39)	L5F	unknown	Het
Slamf7	T	C	1: 171,466,838 (GRCm39)		probably null	Het
Slc22a12	T	C	19: 6,590,479 (GRCm39)	N237S	possibly damaging	Het
Spen	A	T	4: 141,205,495 (GRCm39)	V1044D	unknown	Het
Sqor	A	T	2: 122,651,261 (GRCm39)	M175L	probably benign	Het
Stx16	G	A	2: 173,935,292 (GRCm39)	G156R	probably damaging	Het
Tars3	T	G	7: 65,333,873 (GRCm39)	F632V	probably damaging	Het
Tln1	A	G	4: 43,545,191 (GRCm39)	V1008A	probably benign	Het
Tmem145	A	G	7: 25,015,039 (GRCm39)	H554R	probably benign	Het
Trank1	A	T	9: 111,195,744 (GRCm39)	D1256V	possibly damaging	Het
Trbv19	A	G	6: 41,155,794 (GRCm39)	Y55C	possibly damaging	Het
Ttc23l	C	T	15: 10,551,555 (GRCm39)	C57Y	probably benign	Het
Uap1	A	T	1: 169,988,949 (GRCm39)	C158S	probably benign	Het
Zfp353-ps	T	A	8: 42,535,647 (GRCm39)		noncoding transcript	Het
Zfp629	T	A	7: 127,210,307 (GRCm39)	I501F	probably damaging	Het
Zfp820	T	C	17: 22,037,702 (GRCm39)	Y542C	probably damaging	Het

Other mutations in Lrrc24

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00519:Lrrc24	APN	15	76,602,263 (GRCm39)	missense	probably damaging	1.00
IGL01556:Lrrc24	APN	15	76,606,775 (GRCm39)	missense	probably damaging	0.99
IGL01940:Lrrc24	APN	15	76,600,257 (GRCm39)	missense	probably damaging	1.00
IGL01966:Lrrc24	APN	15	76,602,511 (GRCm39)	missense	probably benign	0.22
IGL02315:Lrrc24	APN	15	76,602,506 (GRCm39)	missense	probably damaging	1.00
IGL03062:Lrrc24	APN	15	76,602,504 (GRCm39)	missense	probably benign
R0240:Lrrc24	UTSW	15	76,607,409 (GRCm39)	missense	probably damaging	1.00
R0240:Lrrc24	UTSW	15	76,607,409 (GRCm39)	missense	probably damaging	1.00
R0365:Lrrc24	UTSW	15	76,599,984 (GRCm39)	missense	probably benign	0.14
R1430:Lrrc24	UTSW	15	76,607,992 (GRCm39)	splice site	probably null
R1789:Lrrc24	UTSW	15	76,606,778 (GRCm39)	missense	probably benign	0.02
R2131:Lrrc24	UTSW	15	76,599,781 (GRCm39)	missense	possibly damaging	0.92
R2202:Lrrc24	UTSW	15	76,607,111 (GRCm39)	missense	probably damaging	1.00
R4247:Lrrc24	UTSW	15	76,602,176 (GRCm39)	missense	possibly damaging	0.89
R4585:Lrrc24	UTSW	15	76,607,889 (GRCm39)	missense	probably damaging	1.00
R4944:Lrrc24	UTSW	15	76,602,546 (GRCm39)	missense	probably damaging	1.00
R4976:Lrrc24	UTSW	15	76,600,200 (GRCm39)	missense	probably benign	0.00
R5119:Lrrc24	UTSW	15	76,600,200 (GRCm39)	missense	probably benign	0.00
R5445:Lrrc24	UTSW	15	76,600,306 (GRCm39)	missense	probably benign	0.10
R7795:Lrrc24	UTSW	15	76,602,248 (GRCm39)	missense	probably benign	0.43
R8334:Lrrc24	UTSW	15	76,600,200 (GRCm39)	missense	probably benign	0.00
X0028:Lrrc24	UTSW	15	76,600,113 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGTAACCTGCGAGTACTACAAAACC -3'
(R):5'- GTAACTTCCTGCGCTGTGAAG -3'

Sequencing Primer
(F):5'- AGCTGGAGTCTCAGGGC -3'
(R):5'- TGTGAAGACCGGCCAGTG -3'

Posted On

2016-11-21