Incidental Mutation 'R5770:Pcdhb19'
ID 446527
Institutional Source Beutler Lab
Gene Symbol Pcdhb19
Ensembl Gene ENSMUSG00000043313
Gene Name protocadherin beta 19
Synonyms Pcdhb11, PcdhbS
MMRRC Submission 043370-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.056) question?
Stock # R5770 (G1)
Quality Score 225
Status Validated
Chromosome 18
Chromosomal Location 37630049-37637181 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 37631090 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Serine at position 295 (N295S)
Ref Sequence ENSEMBL: ENSMUSP00000053326 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000055949] [ENSMUST00000059571] [ENSMUST00000115661] [ENSMUST00000194544]
AlphaFold Q91Y01
Predicted Effect probably benign
Transcript: ENSMUST00000055949
SMART Domains Protein: ENSMUSP00000052113
Gene: ENSMUSG00000048347

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
Pfam:Cadherin_2 30 112 3.1e-34 PFAM
CA 155 240 7.97e-19 SMART
CA 264 345 6.27e-26 SMART
CA 368 449 2.63e-19 SMART
CA 473 559 7.09e-25 SMART
CA 589 670 2.87e-11 SMART
Pfam:Cadherin_C_2 687 771 7.9e-27 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000059571
AA Change: N295S

PolyPhen 2 Score 0.733 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000053326
Gene: ENSMUSG00000043313
AA Change: N295S

DomainStartEndE-ValueType
signal peptide 1 26 N/A INTRINSIC
CA 45 131 4.8e-1 SMART
CA 155 240 6.58e-20 SMART
CA 264 345 1.03e-21 SMART
CA 368 449 4.21e-18 SMART
CA 473 559 3.36e-26 SMART
CA 589 670 6.69e-12 SMART
Pfam:Cadherin_C_2 686 769 1.9e-25 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000115661
SMART Domains Protein: ENSMUSP00000111325
Gene: ENSMUSG00000103458

DomainStartEndE-ValueType
CA 20 131 5.3e-2 SMART
CA 155 240 1.51e-19 SMART
CA 264 348 7.6e-25 SMART
CA 372 453 1.42e-24 SMART
CA 477 563 1.42e-24 SMART
CA 594 674 4.12e-12 SMART
low complexity region 706 721 N/A INTRINSIC
Pfam:Cadherin_tail 796 930 3.9e-58 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000193984
Predicted Effect probably benign
Transcript: ENSMUST00000194544
SMART Domains Protein: ENSMUSP00000141847
Gene: ENSMUSG00000102836

DomainStartEndE-ValueType
Blast:CA 18 66 5e-20 BLAST
Meta Mutation Damage Score 0.1895 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.8%
  • 10x: 97.5%
  • 20x: 95.9%
Validation Efficiency 93% (64/69)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the protocadherin beta gene cluster, one of three related gene clusters tandemly linked on chromosome five. The gene clusters demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters. The beta cluster contains 16 genes and 3 pseudogenes, each encoding 6 extracellular cadherin domains and a cytoplasmic tail that deviates from others in the cadherin superfamily. The extracellular domains interact in a homophilic manner to specify differential cell-cell connections. Unlike the alpha and gamma clusters, the transcripts from these genes are made up of only one large exon, not sharing common 3' exons as expected. These neural cadherin-like cell adhesion proteins are integral plasma membrane proteins. Their specific functions are unknown but they most likely play a critical role in the establishment and function of specific cell-cell neural connections. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 64 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700030C10Rik T C 12: 20,865,460 (GRCm39) noncoding transcript Het
Abhd8 A G 8: 71,909,972 (GRCm39) V392A probably benign Het
Alpk3 A G 7: 80,728,310 (GRCm39) E480G probably benign Het
Ankfy1 C G 11: 72,651,082 (GRCm39) H1011D probably damaging Het
Aoc3 T G 11: 101,222,578 (GRCm39) Y271* probably null Het
Bcl9 T C 3: 97,122,491 (GRCm39) I103V probably benign Het
Cgnl1 C T 9: 71,552,769 (GRCm39) probably null Het
Cyp2c23 T A 19: 44,010,018 (GRCm39) D109V probably damaging Het
Cyp2j13 A T 4: 95,965,669 (GRCm39) W13R probably benign Het
D630003M21Rik T C 2: 158,037,500 (GRCm39) probably benign Het
Desi2 A T 1: 178,084,061 (GRCm39) probably benign Het
Dll3 T C 7: 27,998,434 (GRCm39) E177G possibly damaging Het
Ern2 C T 7: 121,779,130 (GRCm39) G238D possibly damaging Het
Gm11595 G A 11: 99,663,381 (GRCm39) R100C unknown Het
Gm6133 A G 18: 78,393,464 (GRCm39) K153E probably benign Het
Gpr68 A T 12: 100,845,080 (GRCm39) Y155N probably benign Het
Hcrtr2 T A 9: 76,166,948 (GRCm39) I130F probably damaging Het
Hk1 T C 10: 62,122,228 (GRCm39) K489R probably benign Het
Ints13 T C 6: 146,456,571 (GRCm39) N425S probably damaging Het
Itpkc T C 7: 26,912,413 (GRCm39) D578G probably damaging Het
Kcns3 A G 12: 11,142,250 (GRCm39) S150P probably benign Het
Khdrbs3 T A 15: 68,921,312 (GRCm39) probably null Het
Kif11 A G 19: 37,379,313 (GRCm39) I335V probably benign Het
Lrrn4 C G 2: 132,714,076 (GRCm39) C290S probably damaging Het
Macrod2 T C 2: 141,074,102 (GRCm39) probably benign Het
Mgam A G 6: 40,646,738 (GRCm39) N688S probably benign Het
Myh8 G A 11: 67,188,026 (GRCm39) E933K probably damaging Het
Nat8f5 T C 6: 85,794,657 (GRCm39) Y101C probably damaging Het
Nhlrc1 A G 13: 47,168,188 (GRCm39) V23A probably benign Het
Nkx2-3 T A 19: 43,602,972 (GRCm39) F193I probably damaging Het
Nlrp4b T A 7: 10,449,414 (GRCm39) V172E probably benign Het
Nmrk1 G T 19: 18,622,438 (GRCm39) R172S probably benign Het
Nudcd3 T C 11: 6,063,286 (GRCm39) D201G probably damaging Het
Oprm1 G A 10: 6,739,026 (GRCm39) G51D probably damaging Het
Or10g9b C T 9: 39,917,634 (GRCm39) V204I probably benign Het
Or13a18 A G 7: 140,190,856 (GRCm39) Y259C probably damaging Het
Or2t44 G A 11: 58,677,420 (GRCm39) R120H probably benign Het
Or2y14 A G 11: 49,405,419 (GRCm39) E318G unknown Het
Or4c12b T A 2: 89,646,893 (GRCm39) D68E probably damaging Het
Or56a3 A T 7: 104,740,102 (GRCm39) I248N probably damaging Het
Or5ac23 A T 16: 59,149,514 (GRCm39) Y119* probably null Het
Pcdh15 T A 10: 74,021,177 (GRCm39) Y130* probably null Het
Pcdh9 G A 14: 94,124,379 (GRCm39) T597I probably damaging Het
Pcnx3 T C 19: 5,731,607 (GRCm39) probably benign Het
Pdzph1 A T 17: 59,186,146 (GRCm39) I1215N probably damaging Het
Phf21a C T 2: 92,182,199 (GRCm39) T405I possibly damaging Het
Pkd1l2 C A 8: 117,781,757 (GRCm39) G763W probably damaging Het
Prox2 A G 12: 85,134,154 (GRCm39) F591L probably benign Het
Robo3 T A 9: 37,330,497 (GRCm39) H1033L possibly damaging Het
Sdha A T 13: 74,471,239 (GRCm39) C222* probably null Het
Sec16a T C 2: 26,304,402 (GRCm39) D2303G probably damaging Het
Shoc1 T C 4: 59,092,466 (GRCm39) I238M probably benign Het
Slc16a5 A G 11: 115,363,604 (GRCm39) K422E possibly damaging Het
Slc22a30 A T 19: 8,363,891 (GRCm39) M232K probably damaging Het
Slc35b3 A T 13: 39,121,734 (GRCm39) F300I probably damaging Het
Spata2l A G 8: 123,962,459 (GRCm39) V34A probably damaging Het
Susd2 C T 10: 75,473,853 (GRCm39) A581T probably damaging Het
Tecta T A 9: 42,256,885 (GRCm39) Q1597L possibly damaging Het
Tgfb1i1 A T 7: 127,847,719 (GRCm39) probably benign Het
Ticam1 TCACACA TCACA 17: 56,577,629 (GRCm39) probably null Het
Tpm3-rs7 A G 14: 113,552,807 (GRCm39) T234A probably benign Het
Usp20 A G 2: 30,907,520 (GRCm39) Y684C probably damaging Het
Zc3h4 T A 7: 16,163,536 (GRCm39) M585K unknown Het
Zfp292 A G 4: 34,806,747 (GRCm39) I2099T probably damaging Het
Other mutations in Pcdhb19
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01374:Pcdhb19 APN 18 37,631,042 (GRCm39) missense probably damaging 1.00
IGL02070:Pcdhb19 APN 18 37,631,597 (GRCm39) missense probably damaging 1.00
IGL02348:Pcdhb19 APN 18 37,631,861 (GRCm39) missense probably damaging 1.00
IGL02866:Pcdhb19 APN 18 37,632,163 (GRCm39) missense possibly damaging 0.91
IGL02869:Pcdhb19 APN 18 37,631,690 (GRCm39) missense probably damaging 0.98
IGL03118:Pcdhb19 APN 18 37,632,618 (GRCm39) intron probably benign
IGL03120:Pcdhb19 APN 18 37,631,209 (GRCm39) missense probably benign 0.09
IGL03135:Pcdhb19 APN 18 37,631,588 (GRCm39) missense probably benign 0.37
IGL03366:Pcdhb19 APN 18 37,631,665 (GRCm39) missense possibly damaging 0.95
R0147:Pcdhb19 UTSW 18 37,630,235 (GRCm39) missense probably benign 0.01
R0148:Pcdhb19 UTSW 18 37,630,235 (GRCm39) missense probably benign 0.01
R0432:Pcdhb19 UTSW 18 37,632,588 (GRCm39) missense probably benign 0.01
R0609:Pcdhb19 UTSW 18 37,631,005 (GRCm39) missense probably benign
R1438:Pcdhb19 UTSW 18 37,631,015 (GRCm39) missense probably damaging 1.00
R2255:Pcdhb19 UTSW 18 37,630,997 (GRCm39) missense probably benign 0.00
R2265:Pcdhb19 UTSW 18 37,630,736 (GRCm39) missense probably damaging 0.99
R3500:Pcdhb19 UTSW 18 37,630,532 (GRCm39) nonsense probably null
R3708:Pcdhb19 UTSW 18 37,630,442 (GRCm39) missense probably benign 0.04
R4165:Pcdhb19 UTSW 18 37,632,243 (GRCm39) missense probably benign
R4166:Pcdhb19 UTSW 18 37,632,243 (GRCm39) missense probably benign
R4863:Pcdhb19 UTSW 18 37,632,161 (GRCm39) missense probably benign 0.00
R5217:Pcdhb19 UTSW 18 37,630,939 (GRCm39) missense probably benign 0.00
R6031:Pcdhb19 UTSW 18 37,630,776 (GRCm39) missense probably damaging 1.00
R6031:Pcdhb19 UTSW 18 37,630,776 (GRCm39) missense probably damaging 1.00
R6372:Pcdhb19 UTSW 18 37,630,419 (GRCm39) missense probably benign 0.04
R6454:Pcdhb19 UTSW 18 37,632,322 (GRCm39) missense probably benign 0.43
R6985:Pcdhb19 UTSW 18 37,630,211 (GRCm39) missense probably benign 0.00
R7658:Pcdhb19 UTSW 18 37,632,034 (GRCm39) missense probably damaging 0.99
R7662:Pcdhb19 UTSW 18 37,631,788 (GRCm39) missense probably damaging 0.98
R7910:Pcdhb19 UTSW 18 37,630,720 (GRCm39) missense probably benign 0.43
R8041:Pcdhb19 UTSW 18 37,630,367 (GRCm39) missense possibly damaging 0.87
R8318:Pcdhb19 UTSW 18 37,630,999 (GRCm39) missense possibly damaging 0.86
R8989:Pcdhb19 UTSW 18 37,631,476 (GRCm39) missense probably benign 0.04
R9053:Pcdhb19 UTSW 18 37,631,143 (GRCm39) missense probably benign 0.01
R9164:Pcdhb19 UTSW 18 37,631,852 (GRCm39) missense probably damaging 1.00
R9197:Pcdhb19 UTSW 18 37,631,354 (GRCm39) missense probably damaging 1.00
R9309:Pcdhb19 UTSW 18 37,631,858 (GRCm39) missense probably damaging 1.00
R9377:Pcdhb19 UTSW 18 37,632,299 (GRCm39) missense probably damaging 1.00
R9402:Pcdhb19 UTSW 18 37,632,532 (GRCm39) nonsense probably null
R9432:Pcdhb19 UTSW 18 37,630,628 (GRCm39) missense possibly damaging 0.91
R9553:Pcdhb19 UTSW 18 37,631,848 (GRCm39) missense probably damaging 1.00
X0062:Pcdhb19 UTSW 18 37,630,228 (GRCm39) missense probably benign
Z1177:Pcdhb19 UTSW 18 37,631,498 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TCCTCACTGCTTTGGATGGAG -3'
(R):5'- ACGATGACACAATGATTTCAGG -3'

Sequencing Primer
(F):5'- TCCGAGTGGAGGTCATAGATATTAAC -3'
(R):5'- CAGGAAAATTGTCGTTCACATCC -3'
Posted On 2016-11-21