Mutagenetix > Incidental Mutation

Incidental Mutation 'R5699:Clk1'

446536

Institutional Source

Beutler Lab

Gene Symbol

Clk1

Ensembl Gene

ENSMUSG00000026034

Gene Name

CDC-like kinase 1

Synonyms

Clk1, STY

MMRRC Submission

043327-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5699 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

58451147-58463247 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 58459354 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Arginine at position 135 (K135R)

Ref Sequence

ENSEMBL: ENSMUSP00000034868 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034868] [ENSMUST00000148330] [ENSMUST00000151338]

AlphaFold

P22518

Predicted Effect

probably damaging
Transcript: ENSMUST00000034868
AA Change: K135R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000034868
Gene: ENSMUSG00000026034
AA Change: K135R

Domain	Start	End	E-Value	Type
low complexity region	23	37	N/A	INTRINSIC
low complexity region	82	93	N/A	INTRINSIC
low complexity region	99	139	N/A	INTRINSIC
S_TKc	160	476	3.55e-79	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123580

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129577

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131051

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000135380

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147258

Predicted Effect

probably benign
Transcript: ENSMUST00000148330

SMART Domains

Protein: ENSMUSP00000137649
Gene: ENSMUSG00000026034

Domain	Start	End	E-Value	Type
low complexity region	23	37	N/A	INTRINSIC
low complexity region	82	93	N/A	INTRINSIC
low complexity region	99	129	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000186552

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156931

Predicted Effect

probably benign
Transcript: ENSMUST00000151338

SMART Domains

Protein: ENSMUSP00000137815
Gene: ENSMUSG00000026034

Domain	Start	End	E-Value	Type
low complexity region	23	37	N/A	INTRINSIC
low complexity region	82	93	N/A	INTRINSIC
low complexity region	99	129	N/A	INTRINSIC

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the CDC2-like (or LAMMER) family of dual specificity protein kinases. In the nucleus, the encoded protein phosphorylates serine/arginine-rich proteins involved in pre-mRNA processing, releasing them into the nucleoplasm. The choice of splice sites during pre-mRNA processing may be regulated by the concentration of transacting factors, including serine/arginine rich proteins. Therefore, the encoded protein may play an indirect role in governing splice site selection. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jun 2009]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700128F08Rik	A	G	9: 8,225,320 (GRCm39)		noncoding transcript	Het
4930486L24Rik	A	G	13: 61,001,410 (GRCm39)	F106L	possibly damaging	Het
Adam11	A	T	11: 102,664,466 (GRCm39)	M385L	probably benign	Het
Adgre1	C	T	17: 57,788,007 (GRCm39)	P925S	probably benign	Het
Adh7	G	A	3: 137,932,087 (GRCm39)	A234T	probably benign	Het
Ano2	A	G	6: 125,849,703 (GRCm39)	E475G	probably damaging	Het
C2cd4c	A	G	10: 79,448,385 (GRCm39)	V254A	probably benign	Het
Car13	A	G	3: 14,715,749 (GRCm39)	Y89C	probably damaging	Het
Cd38	A	G	5: 44,057,728 (GRCm39)	K100R	probably damaging	Het
Cdh11	A	G	8: 103,361,175 (GRCm39)	I721T	probably damaging	Het
Cdh2	G	A	18: 16,779,579 (GRCm39)	Q161*	probably null	Het
Col5a1	G	A	2: 27,887,611 (GRCm39)	G961R	unknown	Het
Cpt1b	T	A	15: 89,308,476 (GRCm39)	I151F	probably benign	Het
Cyp51	A	G	5: 4,151,213 (GRCm39)	F139L	probably damaging	Het
Disp1	TTGA	T	1: 182,870,119 (GRCm39)		probably null	Het
Dnah8	T	C	17: 31,029,298 (GRCm39)	I4089T	probably benign	Het
Dnali1	C	T	4: 124,952,843 (GRCm39)	V227M	possibly damaging	Het
Eml4	T	G	17: 83,717,514 (GRCm39)	S29A	probably benign	Het
Eps8l3	C	A	3: 107,786,895 (GRCm39)	P24T	probably benign	Het
Fancc	A	T	13: 63,478,446 (GRCm39)		probably null	Het
Firrm	A	T	1: 163,785,120 (GRCm39)	V753D	probably benign	Het
Grid2	G	A	6: 63,885,975 (GRCm39)	A124T	probably damaging	Het
Ikbke	C	T	1: 131,204,204 (GRCm39)		probably null	Het
Kyat1	G	A	2: 30,076,662 (GRCm39)	A284V	probably benign	Het
Lgr6	C	T	1: 134,921,748 (GRCm39)	A199T	probably damaging	Het
Lmbrd2	G	T	15: 9,175,269 (GRCm39)	L393F	probably benign	Het
Lrrc26	T	A	2: 25,180,536 (GRCm39)	L179Q	probably damaging	Het
Mlx	A	G	11: 100,979,520 (GRCm39)	D113G	possibly damaging	Het
Myod1	A	G	7: 46,026,407 (GRCm39)	K104R	probably damaging	Het
Nwd1	G	A	8: 73,429,602 (GRCm39)		probably null	Het
Or56b2j	T	G	7: 104,353,200 (GRCm39)	V142G	probably damaging	Het
Or5b118	A	G	19: 13,448,336 (GRCm39)	M1V	probably null	Het
Or6c3	A	C	10: 129,308,746 (GRCm39)	N62H	probably damaging	Het
Pacsin3	A	T	2: 91,093,126 (GRCm39)	Y206F	probably damaging	Het
Pcdhgb5	T	A	18: 37,864,970 (GRCm39)	V255E	probably damaging	Het
Pdp1	T	C	4: 11,960,907 (GRCm39)	D468G	possibly damaging	Het
Pgr	C	T	9: 8,900,600 (GRCm39)		probably benign	Het
Prrt2	T	A	7: 126,617,899 (GRCm39)	Y345F	probably benign	Het
Rbbp8nl	T	C	2: 179,920,461 (GRCm39)	T515A	probably damaging	Het
Rc3h1	G	T	1: 160,757,823 (GRCm39)	R47L	probably damaging	Het
Rfpl4b	T	A	10: 38,697,281 (GRCm39)	I107F	possibly damaging	Het
Rsbn1	T	C	3: 103,869,801 (GRCm39)	F754S	probably benign	Het
Rufy4	T	C	1: 74,186,822 (GRCm39)	C537R	probably damaging	Het
Scn3a	T	C	2: 65,337,608 (GRCm39)	T630A	possibly damaging	Het
Slc22a30	G	A	19: 8,321,757 (GRCm39)	Q436*	probably null	Het
Slco1a5	C	A	6: 142,194,542 (GRCm39)	C367F	probably damaging	Het
Slit1	A	G	19: 41,613,959 (GRCm39)		probably null	Het
Slit2	G	A	5: 48,378,333 (GRCm39)		probably null	Het
Snrnp40	G	T	4: 130,258,958 (GRCm39)	G122V	possibly damaging	Het
Stk16	T	A	1: 75,190,248 (GRCm39)	M111K	probably damaging	Het
Tbc1d2	T	C	4: 46,616,298 (GRCm39)	I477V	probably benign	Het
Tll1	T	A	8: 64,570,974 (GRCm39)	E199D	probably damaging	Het
Trhde	A	T	10: 114,424,407 (GRCm39)	D459E	probably benign	Het
Ttn	T	C	2: 76,541,881 (GRCm39)	R25375G	possibly damaging	Het
Tubgcp2	A	T	7: 139,578,701 (GRCm39)	M757K	possibly damaging	Het
Ubap1l	T	A	9: 65,279,337 (GRCm39)	V212D	possibly damaging	Het
Ubqln5	A	G	7: 103,778,632 (GRCm39)	V64A	possibly damaging	Het
Usp47	A	G	7: 111,709,204 (GRCm39)	M1337V	probably benign	Het
Vmn1r201	T	A	13: 22,659,409 (GRCm39)	Y208N	probably damaging	Het
Xkr8	C	T	4: 132,455,368 (GRCm39)	R335H	probably damaging	Het
Zbtb49	A	T	5: 38,373,870 (GRCm39)	C25S	probably damaging	Het
Zeb2	T	A	2: 44,887,800 (GRCm39)	N404I	probably damaging	Het

Other mutations in Clk1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01152:Clk1	APN	1	58,452,611 (GRCm39)	missense	possibly damaging	0.93
IGL01516:Clk1	APN	1	58,453,563 (GRCm39)	missense	probably damaging	1.00
IGL01684:Clk1	APN	1	58,456,424 (GRCm39)	critical splice donor site	probably null
IGL02621:Clk1	APN	1	58,453,614 (GRCm39)	missense	probably damaging	1.00
IGL02812:Clk1	APN	1	58,453,635 (GRCm39)	missense	probably damaging	0.98
IGL03028:Clk1	APN	1	58,460,261 (GRCm39)	nonsense	probably null
IGL03117:Clk1	APN	1	58,456,166 (GRCm39)	splice site	probably null
PIT4243001:Clk1	UTSW	1	58,458,836 (GRCm39)	missense	probably damaging	1.00
R0149:Clk1	UTSW	1	58,453,760 (GRCm39)	missense	probably damaging	1.00
R0309:Clk1	UTSW	1	58,452,192 (GRCm39)	splice site	probably benign
R0730:Clk1	UTSW	1	58,453,558 (GRCm39)	missense	probably benign	0.38
R1570:Clk1	UTSW	1	58,453,584 (GRCm39)	missense	probably benign	0.28
R1729:Clk1	UTSW	1	58,460,420 (GRCm39)	missense	probably damaging	1.00
R1905:Clk1	UTSW	1	58,461,101 (GRCm39)	splice site	probably benign
R2382:Clk1	UTSW	1	58,460,448 (GRCm39)	missense	probably benign	0.01
R2850:Clk1	UTSW	1	58,451,438 (GRCm39)	missense	probably damaging	1.00
R4658:Clk1	UTSW	1	58,452,146 (GRCm39)	missense	probably benign	0.01
R4846:Clk1	UTSW	1	58,460,261 (GRCm39)	missense	probably benign	0.33
R5011:Clk1	UTSW	1	58,453,642 (GRCm39)	missense	probably benign
R5196:Clk1	UTSW	1	58,453,772 (GRCm39)	missense	probably benign	0.00
R5838:Clk1	UTSW	1	58,451,819 (GRCm39)	missense	probably damaging	1.00
R5839:Clk1	UTSW	1	58,461,074 (GRCm39)	missense	probably benign	0.09
R6697:Clk1	UTSW	1	58,453,781 (GRCm39)	missense	probably benign	0.21
R7293:Clk1	UTSW	1	58,453,772 (GRCm39)	missense	probably benign	0.00
R7332:Clk1	UTSW	1	58,451,853 (GRCm39)	missense	probably benign	0.16
R7663:Clk1	UTSW	1	58,460,319 (GRCm39)	missense	probably damaging	1.00
R8550:Clk1	UTSW	1	58,451,835 (GRCm39)	missense	probably damaging	0.99
R9090:Clk1	UTSW	1	58,459,312 (GRCm39)	missense	possibly damaging	0.81
R9268:Clk1	UTSW	1	58,458,882 (GRCm39)	missense	unknown
R9271:Clk1	UTSW	1	58,459,312 (GRCm39)	missense	possibly damaging	0.81
Z1176:Clk1	UTSW	1	58,456,531 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TCTAGGTGATGCTGCAAATTTCC -3'
(R):5'- CCCTGTGAATTTCTGGGGAC -3'

Sequencing Primer
(F):5'- GGTGATGCTGCAAATTTCCTTATC -3'
(R):5'- GGACTGAATTTGAAATTGCTCCTGC -3'

Posted On

2016-11-21