Mutagenetix > Incidental Mutation

Incidental Mutation 'R4952:Nek5'

446646

Institutional Source

Beutler Lab

Gene Symbol

Nek5

Ensembl Gene

ENSMUSG00000037738

Gene Name

NIMA (never in mitosis gene a)-related expressed kinase 5

Synonyms

MMRRC Submission

042549-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.113) question?

Stock #

R4952 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

22073616-22125053 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 22079088 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Leucine at position 573 (I573L)

Ref Sequence

ENSEMBL: ENSMUSP00000148211 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000169834] [ENSMUST00000209656]

AlphaFold

Q7TSC3

Predicted Effect

probably benign
Transcript: ENSMUST00000169834
AA Change: M573L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000126705
Gene: ENSMUSG00000037738
AA Change: M573L

Domain	Start	End	E-Value	Type
S_TKc	4	255	3.77e-92	SMART
Blast:S_TKc	396	497	3e-37	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000209656
AA Change: I573L

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

Predicted Effect

probably benign
Transcript: ENSMUST00000210824

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.0%
3x: 98.3%
10x: 96.5%
20x: 93.0%

Validation Efficiency

99% (93/94)

MGI Phenotype

PHENOTYPE: Mice homozygous for an ENU-induced mutation exhibit progressive hearing impairment. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930522L14Rik	A	G	5: 109,739,197 (GRCm38)		probably null	Het
4933421I07Rik	T	C	7: 42,447,659 (GRCm38)	Y76C	possibly damaging	Het
Adcy4	C	T	14: 55,779,029 (GRCm38)	D322N	probably damaging	Het
Ak9	A	G	10: 41,420,589 (GRCm38)	M1444V	probably benign	Het
Amfr	A	G	8: 93,973,159 (GRCm38)		probably benign	Het
Ankef1	A	G	2: 136,550,529 (GRCm38)	E546G	probably damaging	Het
Ankrd24	A	G	10: 81,647,148 (GRCm38)	M977V	probably benign	Het
Ap3m1	A	T	14: 21,040,066 (GRCm38)	S5T	probably benign	Het
Aqr	C	A	2: 114,109,937 (GRCm38)	D1243Y	probably damaging	Het
Arhgef2	T	C	3: 88,642,462 (GRCm38)	L591P	probably damaging	Het
Arid4a	C	A	12: 71,023,525 (GRCm38)	T70K	possibly damaging	Het
Asphd1	C	T	7: 126,948,685 (GRCm38)	A149T	probably benign	Het
Avpr1a	T	A	10: 122,449,754 (GRCm38)	M317K	probably damaging	Het
Birc2	T	C	9: 7,836,740 (GRCm38)	I109V	probably damaging	Het
Catsperd	A	G	17: 56,632,303 (GRCm38)	Y44C	probably damaging	Het
Crygb	T	G	1: 65,082,109 (GRCm38)	S20R	probably benign	Het
Cyp3a25	T	C	5: 145,991,524 (GRCm38)	N237S	probably benign	Het
Dkk3	C	T	7: 112,118,351 (GRCm38)	A304T	probably benign	Het
Dst	T	C	1: 34,271,422 (GRCm38)	L4101S	probably damaging	Het
Dysf	A	G	6: 84,149,986 (GRCm38)	N1407S	possibly damaging	Het
Epb41	A	G	4: 132,000,270 (GRCm38)	V265A	probably damaging	Het
Faim2	C	T	15: 99,521,228 (GRCm38)	E75K	possibly damaging	Het
Fam237b	T	A	5: 5,575,387 (GRCm38)	F28I	probably benign	Het
Fbn1	T	A	2: 125,317,534 (GRCm38)	D2208V	probably damaging	Het
Fbxo28	A	G	1: 182,326,385 (GRCm38)	S129P	probably damaging	Het
Fbxw14	T	A	9: 109,276,201 (GRCm38)	I299L	probably benign	Het
Fras1	C	T	5: 96,647,498 (GRCm38)	A1050V	probably benign	Het
Fyb1	C	A	15: 6,638,811 (GRCm38)	T495K	probably damaging	Het
Ghdc	A	T	11: 100,769,151 (GRCm38)	W257R	probably damaging	Het
Gm10719	T	C	9: 3,018,962 (GRCm38)	L69S	probably benign	Het
Gm11492	A	G	11: 87,567,772 (GRCm38)	N324S	probably benign	Het
Gm12250	G	T	11: 58,188,384 (GRCm38)		noncoding transcript	Het
Gm4846	A	T	1: 166,483,934 (GRCm38)	F452Y	probably damaging	Het
Gpbp1	T	C	13: 111,440,750 (GRCm38)	D202G	probably damaging	Het
Gpd2	C	A	2: 57,307,013 (GRCm38)	Y193*	probably null	Het
Grhl2	G	T	15: 37,287,249 (GRCm38)	R229L	probably benign	Het
Gtf2a1	A	G	12: 91,575,749 (GRCm38)	F59L	possibly damaging	Het
Heatr1	G	T	13: 12,410,599 (GRCm38)	W640L	probably benign	Het
Kalrn	A	T	16: 34,357,415 (GRCm38)		probably null	Het
Keap1	T	C	9: 21,237,286 (GRCm38)	T142A	probably damaging	Het
Kpna2	G	A	11: 106,991,235 (GRCm38)	T255M	probably damaging	Het
Kpna3	A	G	14: 61,370,389 (GRCm38)	C456R	probably damaging	Het
Lama1	G	A	17: 67,767,566 (GRCm38)		probably null	Het
Lrrc37	T	C	11: 103,614,207 (GRCm38)	T2312A	possibly damaging	Het
Mag	C	A	7: 30,909,156 (GRCm38)	E178*	probably null	Het
Map3k13	A	G	16: 21,911,019 (GRCm38)	I467V	probably benign	Het
Mga	A	G	2: 119,903,301 (GRCm38)	E210G	probably damaging	Het
Msi2	C	T	11: 88,366,784 (GRCm38)		probably null	Het
Naa16	A	T	14: 79,345,085 (GRCm38)	D521E	probably damaging	Het
Nav2	C	T	7: 49,304,540 (GRCm38)		probably benign	Het
Nek10	T	A	14: 14,860,986 (GRCm38)	L513M	possibly damaging	Het
Ntn1	CCTTCTTCT	CCTTCT	11: 68,213,026 (GRCm38)		probably benign	Het
Odad1	A	C	7: 45,942,191 (GRCm38)	E293A	probably damaging	Het
Or2w1	G	A	13: 21,133,344 (GRCm38)	V190I	probably benign	Het
Or5v1b	A	T	17: 37,530,750 (GRCm38)	T258S	possibly damaging	Het
Or6c204	T	A	10: 129,186,597 (GRCm38)	T275S	probably benign	Het
Or8b12b	T	A	9: 37,773,064 (GRCm38)	M135K	probably damaging	Het
Orai1	T	G	5: 123,029,250 (GRCm38)	V162G	probably damaging	Het
P2rx6	T	C	16: 17,567,444 (GRCm38)	S134P	probably damaging	Het
Pappa2	G	A	1: 158,857,136 (GRCm38)	T811I	probably null	Het
Pcdhga10	T	C	18: 37,747,160 (GRCm38)		probably benign	Het
Pex16	C	T	2: 92,379,060 (GRCm38)	R241*	probably null	Het
Plxnb1	T	C	9: 109,114,836 (GRCm38)	F1969L	probably damaging	Het
Postn	A	G	3: 54,390,315 (GRCm38)		probably benign	Het
Prdm15	A	T	16: 97,806,077 (GRCm38)	I752N	probably damaging	Het
Rasgef1c	A	T	11: 49,979,512 (GRCm38)	K468M	probably damaging	Het
Rbfox1	A	G	16: 7,277,088 (GRCm38)	S111G	probably benign	Het
Rbm28	T	C	6: 29,138,598 (GRCm38)	D405G	probably damaging	Het
Rell1	A	G	5: 63,939,667 (GRCm38)		probably benign	Het
Rfx3	A	G	19: 27,830,672 (GRCm38)	S224P	probably damaging	Het
Scarb2	A	T	5: 92,454,777 (GRCm38)	I260K	probably damaging	Het
Slc15a4	A	G	5: 127,603,837 (GRCm38)	F72L	probably damaging	Het
Spg7	C	A	8: 123,090,171 (GRCm38)	R534S	probably damaging	Het
Stoml2	T	C	4: 43,029,589 (GRCm38)	T164A	probably benign	Het
Syt11	C	T	3: 88,762,283 (GRCm38)	G101S	possibly damaging	Het
Traj12	A	G	14: 54,206,556 (GRCm38)		probably benign	Het
Traj7	A	T	14: 54,211,524 (GRCm38)		probably benign	Het
Tysnd1	C	T	10: 61,702,076 (GRCm38)	T175I	possibly damaging	Het
Usp48	T	G	4: 137,606,693 (GRCm38)	Y139*	probably null	Het
Vmn2r72	A	G	7: 85,751,109 (GRCm38)	L244P	probably benign	Het
Wasf1	C	A	10: 40,936,190 (GRCm38)	P325Q	unknown	Het
Zc3h18	T	A	8: 122,410,900 (GRCm38)		probably benign	Het
Zfp712	A	G	13: 67,040,841 (GRCm38)	S541P	possibly damaging	Het

Other mutations in Nek5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01287:Nek5	APN	8	22,111,183 (GRCm38)	missense	possibly damaging	0.75
IGL01418:Nek5	APN	8	22,095,269 (GRCm38)	missense	probably damaging	1.00
IGL01485:Nek5	APN	8	22,083,369 (GRCm38)	missense	probably benign	0.05
IGL01640:Nek5	APN	8	22,120,840 (GRCm38)	missense	probably benign	0.00
IGL01894:Nek5	APN	8	22,113,819 (GRCm38)	missense	probably damaging	1.00
IGL01958:Nek5	APN	8	22,096,826 (GRCm38)	missense	probably benign	0.09
IGL02332:Nek5	APN	8	22,095,261 (GRCm38)	missense	probably benign	0.14
IGL02718:Nek5	APN	8	22,097,463 (GRCm38)	missense	probably benign	0.15
IGL03203:Nek5	APN	8	22,118,768 (GRCm38)	missense	probably damaging	1.00
IGL03325:Nek5	APN	8	22,079,142 (GRCm38)	missense	probably benign
R0257:Nek5	UTSW	8	22,123,672 (GRCm38)	intron	probably benign
R0522:Nek5	UTSW	8	22,088,797 (GRCm38)	splice site	probably benign
R0525:Nek5	UTSW	8	22,079,077 (GRCm38)	unclassified	probably benign
R1476:Nek5	UTSW	8	22,096,731 (GRCm38)	missense	possibly damaging	0.86
R1483:Nek5	UTSW	8	22,096,790 (GRCm38)	missense	probably benign	0.30
R1764:Nek5	UTSW	8	22,109,912 (GRCm38)	missense	probably damaging	0.98
R1892:Nek5	UTSW	8	22,107,729 (GRCm38)	missense	probably benign	0.11
R1989:Nek5	UTSW	8	22,111,169 (GRCm38)	missense	probably damaging	1.00
R2229:Nek5	UTSW	8	22,113,632 (GRCm38)	missense	possibly damaging	0.76
R4114:Nek5	UTSW	8	22,111,162 (GRCm38)	missense	probably damaging	1.00
R4116:Nek5	UTSW	8	22,111,162 (GRCm38)	missense	probably damaging	1.00
R4709:Nek5	UTSW	8	22,083,427 (GRCm38)	missense	probably damaging	0.99
R4952:Nek5	UTSW	8	22,096,799 (GRCm38)	missense	probably benign	0.00
R5185:Nek5	UTSW	8	22,083,381 (GRCm38)	missense	possibly damaging	0.78
R5816:Nek5	UTSW	8	22,096,736 (GRCm38)	missense	probably benign	0.02
R5884:Nek5	UTSW	8	22,088,801 (GRCm38)	critical splice donor site	probably null
R6009:Nek5	UTSW	8	22,120,822 (GRCm38)	missense	probably benign	0.00
R6279:Nek5	UTSW	8	22,107,721 (GRCm38)	missense	probably benign
R6300:Nek5	UTSW	8	22,107,721 (GRCm38)	missense	probably benign
R6437:Nek5	UTSW	8	22,085,460 (GRCm38)	missense	possibly damaging	0.95
R7034:Nek5	UTSW	8	22,107,723 (GRCm38)	missense	probably benign	0.00
R7036:Nek5	UTSW	8	22,107,723 (GRCm38)	missense	probably benign	0.00
R7278:Nek5	UTSW	8	22,090,484 (GRCm38)	missense	probably benign	0.13
R7436:Nek5	UTSW	8	22,108,040 (GRCm38)	missense	probably damaging	1.00
R7666:Nek5	UTSW	8	22,090,517 (GRCm38)	missense	probably benign	0.12
R7827:Nek5	UTSW	8	22,083,387 (GRCm38)	missense	possibly damaging	0.91
R8057:Nek5	UTSW	8	22,088,906 (GRCm38)	missense	probably benign	0.21
R8350:Nek5	UTSW	8	22,113,672 (GRCm38)	missense	probably damaging	0.98
R8847:Nek5	UTSW	8	22,123,579 (GRCm38)	missense	probably benign	0.01
R8888:Nek5	UTSW	8	22,090,479 (GRCm38)	critical splice donor site	probably null
R8933:Nek5	UTSW	8	22,120,843 (GRCm38)	missense	probably damaging	1.00
R8933:Nek5	UTSW	8	22,111,210 (GRCm38)	missense	probably damaging	1.00
R9353:Nek5	UTSW	8	22,073,945 (GRCm38)	missense	probably benign	0.00
R9574:Nek5	UTSW	8	22,074,024 (GRCm38)	missense	probably benign	0.00
R9745:Nek5	UTSW	8	22,083,463 (GRCm38)	missense	probably benign	0.04
X0012:Nek5	UTSW	8	22,095,248 (GRCm38)	missense	possibly damaging	0.92

Predicted Primers

PCR Primer
(F):5'- CATAGCCACGCATGCATCTC -3'
(R):5'- ATGCTGCTCCTCAAGTACAC -3'

Sequencing Primer
(F):5'- CTGTAGCTGTTTTCAAACACACCAG -3'
(R):5'- CAAGTACACAGAGTAGTCTCCTTTC -3'

Posted On

2016-12-05