Incidental Mutation 'R5779:Slc36a3'
ID 446883
Institutional Source Beutler Lab
Gene Symbol Slc36a3
Ensembl Gene ENSMUSG00000049491
Gene Name solute carrier family 36 (proton/amino acid symporter), member 3
Synonyms TRAMD2, PAT3, tramdorin2
MMRRC Submission 043377-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.124) question?
Stock # R5779 (G1)
Quality Score 225
Status Validated
Chromosome 11
Chromosomal Location 55015641-55042534 bp(-) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) A to T at 55026094 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Stop codon at position 241 (Y241*)
Ref Sequence ENSEMBL: ENSMUSP00000020502 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000020502] [ENSMUST00000128244]
AlphaFold Q811P0
Predicted Effect probably null
Transcript: ENSMUST00000020502
AA Change: Y241*
SMART Domains Protein: ENSMUSP00000020502
Gene: ENSMUSG00000049491
AA Change: Y241*

DomainStartEndE-ValueType
low complexity region 19 44 N/A INTRINSIC
Pfam:Aa_trans 50 459 7.2e-66 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000128244
SMART Domains Protein: ENSMUSP00000116073
Gene: ENSMUSG00000049491

DomainStartEndE-ValueType
low complexity region 19 44 N/A INTRINSIC
Pfam:Aa_trans 50 87 2.7e-7 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000155883
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.5%
  • 20x: 95.8%
Validation Efficiency 88% (52/59)
Allele List at MGI
Other mutations in this stock
Total: 51 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca6 T C 11: 110,075,496 (GRCm39) M1332V probably benign Het
Acsbg3 A T 17: 57,188,061 (GRCm39) N190Y probably benign Het
Afg3l2 T C 18: 67,573,513 (GRCm39) K132R probably null Het
Antkmt A G 17: 26,009,631 (GRCm39) V194A probably benign Het
Arap3 T C 18: 38,117,418 (GRCm39) D886G probably damaging Het
B3gntl1 G T 11: 121,542,502 (GRCm39) probably null Het
Cdk12 T A 11: 98,109,900 (GRCm39) S640R probably benign Het
Ceacam12 C A 7: 17,803,079 (GRCm39) P162T probably benign Het
Chrna5 C A 9: 54,905,388 (GRCm39) H67N probably benign Het
Copb1 T A 7: 113,818,807 (GRCm39) D837V probably damaging Het
Dcaf5 C T 12: 80,385,606 (GRCm39) R840H probably benign Het
Ect2l T A 10: 18,039,186 (GRCm39) Q324L probably benign Het
Eef1e1 T C 13: 38,830,249 (GRCm39) N141S probably damaging Het
Eif2ak4 A C 2: 118,243,444 (GRCm39) N208T possibly damaging Het
Ext1 A G 15: 53,207,949 (GRCm39) Y271H probably damaging Het
Fbxo5 G A 10: 5,750,303 (GRCm39) R323C possibly damaging Het
Fpr-rs3 C A 17: 20,844,488 (GRCm39) A218S possibly damaging Het
Gm20499 G A 5: 114,955,082 (GRCm39) probably benign Het
Gm57859 A G 11: 113,578,818 (GRCm39) D71G probably benign Het
Gucy1b2 C A 14: 62,651,750 (GRCm39) L400F possibly damaging Het
Hgd T A 16: 37,413,733 (GRCm39) L24H probably benign Het
Hmx3 C A 7: 131,146,057 (GRCm39) S255* probably null Het
Ifrd1 A T 12: 40,253,369 (GRCm39) F448I probably damaging Het
Igfn1 T A 1: 135,894,578 (GRCm39) E1996V probably benign Het
Itpr1 G A 6: 108,329,104 (GRCm39) G173R probably damaging Het
Kbtbd8 T C 6: 95,095,515 (GRCm39) S26P probably benign Het
Kctd17 A T 15: 78,321,333 (GRCm39) probably benign Het
Matr3 T C 18: 35,717,575 (GRCm39) S258P possibly damaging Het
Mpp4 G A 1: 59,190,825 (GRCm39) A90V probably benign Het
Mrpl20 G A 4: 155,891,378 (GRCm39) R34Q probably damaging Het
Neb A T 2: 52,135,313 (GRCm39) S3266T probably damaging Het
Nipal3 A G 4: 135,179,650 (GRCm39) probably benign Het
Npas2 A T 1: 39,326,652 (GRCm39) T46S possibly damaging Het
Nsd3 G T 8: 26,172,685 (GRCm39) E815* probably null Het
Nup98 C A 7: 101,801,568 (GRCm39) V786L probably benign Het
Or4k2 A T 14: 50,424,203 (GRCm39) M157K possibly damaging Het
Pcdhb3 T C 18: 37,434,520 (GRCm39) V162A probably benign Het
Pcgf2 G A 11: 97,581,117 (GRCm39) P58L probably damaging Het
Penk A G 4: 4,134,318 (GRCm39) F110L probably damaging Het
Relch T G 1: 105,615,072 (GRCm39) N246K probably damaging Het
Scfd1 A G 12: 51,478,312 (GRCm39) N508S probably benign Het
Scn2a T C 2: 65,594,827 (GRCm39) V1892A probably benign Het
Sema6a G A 18: 47,381,893 (GRCm39) R885C probably damaging Het
Sik2 T C 9: 50,807,145 (GRCm39) H755R probably benign Het
Smg5 T C 3: 88,258,925 (GRCm39) probably benign Het
Spag9 A G 11: 94,005,079 (GRCm39) T1049A probably benign Het
Tas2r103 T C 6: 133,013,908 (GRCm39) M53V probably benign Het
Tpr C T 1: 150,299,292 (GRCm39) A1090V probably damaging Het
Traf5 T A 1: 191,729,633 (GRCm39) R473W probably damaging Het
Ush2a T C 1: 188,175,707 (GRCm39) probably null Het
Vit A G 17: 78,853,855 (GRCm39) T34A probably benign Het
Other mutations in Slc36a3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL03104:Slc36a3 APN 11 55,015,946 (GRCm39) missense probably damaging 1.00
IGL03241:Slc36a3 APN 11 55,015,934 (GRCm39) missense possibly damaging 0.95
R0632:Slc36a3 UTSW 11 55,015,906 (GRCm39) missense probably damaging 1.00
R1117:Slc36a3 UTSW 11 55,037,006 (GRCm39) missense possibly damaging 0.78
R1549:Slc36a3 UTSW 11 55,033,596 (GRCm39) missense probably damaging 1.00
R3423:Slc36a3 UTSW 11 55,033,607 (GRCm39) missense probably benign 0.00
R3425:Slc36a3 UTSW 11 55,033,607 (GRCm39) missense probably benign 0.00
R3791:Slc36a3 UTSW 11 55,015,982 (GRCm39) missense possibly damaging 0.95
R3980:Slc36a3 UTSW 11 55,026,209 (GRCm39) missense probably benign
R4970:Slc36a3 UTSW 11 55,039,399 (GRCm39) missense probably damaging 1.00
R4973:Slc36a3 UTSW 11 55,037,630 (GRCm39) splice site probably benign
R4986:Slc36a3 UTSW 11 55,037,592 (GRCm39) makesense probably null
R5112:Slc36a3 UTSW 11 55,039,399 (GRCm39) missense probably damaging 1.00
R5399:Slc36a3 UTSW 11 55,037,006 (GRCm39) missense possibly damaging 0.78
R5534:Slc36a3 UTSW 11 55,033,595 (GRCm39) missense possibly damaging 0.83
R5580:Slc36a3 UTSW 11 55,026,279 (GRCm39) missense probably benign 0.14
R5682:Slc36a3 UTSW 11 55,016,489 (GRCm39) missense probably benign 0.00
R5841:Slc36a3 UTSW 11 55,016,547 (GRCm39) nonsense probably null
R6228:Slc36a3 UTSW 11 55,015,777 (GRCm39) missense probably benign 0.01
R6483:Slc36a3 UTSW 11 55,026,089 (GRCm39) missense probably benign 0.01
R6908:Slc36a3 UTSW 11 55,040,712 (GRCm39) intron probably benign
R6927:Slc36a3 UTSW 11 55,020,519 (GRCm39) missense probably damaging 0.98
R7828:Slc36a3 UTSW 11 55,042,024 (GRCm39) missense probably benign 0.00
R7995:Slc36a3 UTSW 11 55,020,495 (GRCm39) missense probably benign 0.04
R8212:Slc36a3 UTSW 11 55,015,907 (GRCm39) missense probably damaging 1.00
R8238:Slc36a3 UTSW 11 55,022,433 (GRCm39) missense probably benign 0.05
R8239:Slc36a3 UTSW 11 55,022,433 (GRCm39) missense probably benign 0.05
R8329:Slc36a3 UTSW 11 55,039,409 (GRCm39) missense probably damaging 1.00
R8929:Slc36a3 UTSW 11 55,028,137 (GRCm39) missense probably damaging 1.00
R9034:Slc36a3 UTSW 11 55,016,515 (GRCm39) missense probably damaging 0.99
R9489:Slc36a3 UTSW 11 55,040,726 (GRCm39) missense unknown
R9506:Slc36a3 UTSW 11 55,039,457 (GRCm39) missense probably benign 0.14
R9661:Slc36a3 UTSW 11 55,015,984 (GRCm39) missense probably benign 0.00
R9696:Slc36a3 UTSW 11 55,026,161 (GRCm39) missense possibly damaging 0.52
R9735:Slc36a3 UTSW 11 55,026,104 (GRCm39) missense probably damaging 1.00
Z1177:Slc36a3 UTSW 11 55,026,278 (GRCm39) missense probably damaging 0.97
Predicted Primers PCR Primer
(F):5'- CCATGATGCCGAAGATGAGG -3'
(R):5'- GTCGTTCTGGCAGATCATGG -3'

Sequencing Primer
(F):5'- GGTGTAGATGATAGTGATGCCTAGC -3'
(R):5'- TTCTGGCAGATCATGGAAGAAGCC -3'
Posted On 2016-12-15