Mutagenetix > Incidental Mutations

Incidental Mutation 'R5792:Pcif1'

447007

Institutional Source

Beutler Lab

Gene Symbol

Pcif1

Ensembl Gene

ENSMUSG00000039849

Gene Name

PDX1 C-terminal inhibiting factor 1

Synonyms

Accession Numbers

Is this an essential gene?

Possibly non essential (E-score: 0.257) question?

Stock #

R5792 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

164879304-164894454 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 164885379 bp

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 90 (N90K)

Ref Sequence

ENSEMBL: ENSMUSP00000039555 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000041643]

Predicted Effect

probably damaging
Transcript: ENSMUST00000041643
AA Change: N90K

PolyPhen 2 Score 0.968 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000039555
Gene: ENSMUSG00000039849
AA Change: N90K

Domain	Start	End	E-Value	Type
WW	44	77	4.34e-4	SMART
low complexity region	132	148	N/A	INTRINSIC
Pfam:PCIF1_WW	445	620	7.1e-74	PFAM
low complexity region	675	686	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000122810

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130213

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145327

Meta Mutation Damage Score

0.1199

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 95.9%

Validation Efficiency

95% (56/59)

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930433I11Rik	A	T	7: 40,993,521	I296F	possibly damaging	Het
Adamts19	C	T	18: 58,837,512	T56M	possibly damaging	Het
Armc4	T	C	18: 7,217,965	N583S	probably benign	Het
Axdnd1	T	G	1: 156,341,889	E802D	probably damaging	Het
Birc6	T	C	17: 74,631,053	V2630A	probably benign	Het
Capn5	A	T	7: 98,131,195	F323I	probably benign	Het
Cdc25b	A	G	2: 131,191,759	E206G	probably damaging	Het
Cmah	T	G	13: 24,456,915	N382K	probably benign	Het
Col11a1	A	T	3: 114,131,593	D25V	probably damaging	Het
Cyp2d41-ps	G	T	15: 82,779,220		noncoding transcript	Het
Cyp3a59	A	G	5: 146,099,851	K288E	possibly damaging	Het
Cyr61	T	C	3: 145,648,658	D166G	probably benign	Het
Dclre1a	A	C	19: 56,529,590	I1019S	probably damaging	Het
Fat2	G	T	11: 55,262,325	A3687D	possibly damaging	Het
Flg2	T	A	3: 93,203,497	V944E	unknown	Het
Galntl5	T	C	5: 25,198,463	V177A	possibly damaging	Het
Gm12695	T	C	4: 96,728,283	T438A	probably benign	Het
Gm14295	A	T	2: 176,811,014	N766Y	probably benign	Het
Gm15433	T	A	1: 84,964,112		noncoding transcript	Het
Gm2431	C	T	7: 142,258,332	G8E	unknown	Het
Gm5435	T	A	12: 82,495,426		noncoding transcript	Het
Gprc5c	G	T	11: 114,864,267	V257L	possibly damaging	Het
Grip1	T	C	10: 119,985,480	I350T	probably benign	Het
Guf1	T	A	5: 69,560,486	F196I	probably damaging	Het
Kcng4	G	T	8: 119,626,279	D297E	probably damaging	Het
Khdrbs2	G	A	1: 32,472,692	R246Q	probably damaging	Het
Layn	T	C	9: 51,068,161	E148G	probably damaging	Het
Lrig3	T	A	10: 126,009,919	V739E	probably damaging	Het
Lyg1	A	G	1: 37,947,267	W129R	probably benign	Het
Nup210l	C	T	3: 90,199,857	T1567I	probably damaging	Het
Nus1	T	A	10: 52,429,256	L12*	probably null	Het
Olfr2	A	T	7: 107,001,443	V139D	possibly damaging	Het
Olfr354	A	G	2: 36,907,101	I52V	probably benign	Het
Otop1	A	G	5: 38,297,916	N218S	probably benign	Het
Phf2	T	C	13: 48,820,042		probably null	Het
Piezo2	T	A	18: 63,146,856	I215F	probably damaging	Het
Pitpnm2	G	T	5: 124,130,321	C553*	probably null	Het
Prdm1	A	G	10: 44,450,228	V115A	probably damaging	Het
Prkdc	A	G	16: 15,816,752	D3587G	probably damaging	Het
Sez6l	A	T	5: 112,422,024	Y883*	probably null	Het
Sh3rf2	A	C	18: 42,111,138	H223P	probably damaging	Het
Slco1a5	C	T	6: 142,242,113	C500Y	probably damaging	Het
Slf1	T	A	13: 77,066,737	H610L	probably benign	Het
Syn3	T	C	10: 86,294,628	*244W	probably null	Het
Sytl2	A	T	7: 90,375,689	D295V	probably damaging	Het
Tnfrsf1a	T	A	6: 125,358,077	C44S	probably damaging	Het
Ttc6	T	G	12: 57,673,204	L854V	possibly damaging	Het
Ttn	T	C	2: 76,766,258	I18358V	probably benign	Het
Vmn2r108	A	G	17: 20,463,136	V602A	probably damaging	Het
Zap70	A	G	1: 36,779,009		probably benign	Het
Zfhx2	T	C	14: 55,066,846	E1227G	possibly damaging	Het
Znhit3	G	A	11: 84,916,084		probably null	Het
Zpbp2	A	G	11: 98,551,410		probably benign	Het

Other mutations in Pcif1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01161:Pcif1	APN	2	164885788	missense	probably damaging	1.00
IGL01598:Pcif1	APN	2	164886611	missense	possibly damaging	0.86
R0313:Pcif1	UTSW	2	164884419	missense	probably damaging	0.97
R0329:Pcif1	UTSW	2	164889444	missense	probably damaging	1.00
R0330:Pcif1	UTSW	2	164889444	missense	probably damaging	1.00
R1070:Pcif1	UTSW	2	164889138	missense	probably benign	0.01
R1350:Pcif1	UTSW	2	164886767	missense	probably damaging	0.99
R1467:Pcif1	UTSW	2	164889138	missense	probably benign	0.01
R1467:Pcif1	UTSW	2	164889138	missense	probably benign	0.01
R1583:Pcif1	UTSW	2	164886727	missense	probably damaging	1.00
R1640:Pcif1	UTSW	2	164885683	missense	probably benign
R1852:Pcif1	UTSW	2	164888466	missense	probably damaging	0.97
R2252:Pcif1	UTSW	2	164890879	missense	probably benign	0.05
R2571:Pcif1	UTSW	2	164884211	missense	probably damaging	1.00
R3879:Pcif1	UTSW	2	164885958	missense	probably benign	0.40
R4956:Pcif1	UTSW	2	164889690	missense	probably damaging	1.00
R5913:Pcif1	UTSW	2	164884492	intron	probably benign
R6798:Pcif1	UTSW	2	164885791	missense	possibly damaging	0.94
R6913:Pcif1	UTSW	2	164884304	critical splice acceptor site	probably null
R7359:Pcif1	UTSW	2	164884331	missense	probably damaging	1.00
R7453:Pcif1	UTSW	2	164888364	missense	probably damaging	1.00
R7453:Pcif1	UTSW	2	164889630	missense	possibly damaging	0.94
R7917:Pcif1	UTSW	2	164888472	missense	probably benign	0.08
R8031:Pcif1	UTSW	2	164886522	missense	probably damaging	1.00
R8474:Pcif1	UTSW	2	164888352	missense	probably damaging	1.00
R8519:Pcif1	UTSW	2	164884383	missense	probably damaging	1.00
R8553:Pcif1	UTSW	2	164886497	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGGTTACTAACAAGGCCTTTCAG -3'
(R):5'- GCCACATGTCCAAGGTAACC -3'

Sequencing Primer
(F):5'- CCTTTCAGAAGGTGAGGGAGTC -3'
(R):5'- GTAACCACTTACCAGCCAGG -3'

Posted On

2016-12-15