Mutagenetix > Incidental Mutation

Incidental Mutation 'R5799:Narf'

447414

Institutional Source

Beutler Lab

Gene Symbol

Narf

Ensembl Gene

ENSMUSG00000000056

Gene Name

nuclear prelamin A recognition factor

Synonyms

4430402O11Rik

MMRRC Submission

043388-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.132) question?

Stock #

R5799 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

121128079-121146682 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 121135480 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Histidine at position 111 (Y111H)

Ref Sequence

ENSEMBL: ENSMUSP00000099304 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000103015]

AlphaFold

Q9CYQ7

Predicted Effect

probably damaging
Transcript: ENSMUST00000103015
AA Change: Y111H

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000099304
Gene: ENSMUSG00000000056
AA Change: Y111H

Domain	Start	End	E-Value	Type
Pfam:Fe_hyd_lg_C	98	391	1e-75	PFAM
Fe_hyd_SSU	396	452	5.66e-19	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151088

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154047

Meta Mutation Damage Score

0.5132

Coding Region Coverage

1x: 99.3%
3x: 98.8%
10x: 97.5%
20x: 95.9%

Validation Efficiency

89% (51/57)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Several proteins have been found to be prenylated and methylated at their carboxyl-terminal ends. Prenylation was initially believed to be important only for membrane attachment. However, another role for prenylation appears to be its importance in protein-protein interactions. The only nuclear proteins known to be prenylated in mammalian cells are prelamin A- and B-type lamins. Prelamin A is farnesylated and carboxymethylated on the cysteine residue of a carboxyl-terminal CaaX motif. This post-translationally modified cysteine residue is removed from prelamin A when it is endoproteolytically processed into mature lamin A. The protein encoded by this gene binds to the prenylated prelamin A carboxyl-terminal tail domain. It may be a component of a prelamin A endoprotease complex. The encoded protein is located in the nucleus, where it partially colocalizes with the nuclear lamina. It shares limited sequence similarity with iron-only bacterial hydrogenases. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene, including one with a novel exon that is generated by RNA editing. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
AA986860	C	T	1: 130,668,908 (GRCm39)	Q92*	probably null	Het
Accsl	T	C	2: 93,694,748 (GRCm39)		probably null	Het
Ahnak2	T	C	12: 112,745,365 (GRCm39)		probably benign	Het
Alcam	T	C	16: 52,130,212 (GRCm39)	D46G	probably benign	Het
Asap2	T	C	12: 21,218,247 (GRCm39)	S57P	probably damaging	Het
Atg14	A	T	14: 47,784,752 (GRCm39)	V314D	possibly damaging	Het
C230029F24Rik	C	T	1: 49,377,307 (GRCm39)		noncoding transcript	Het
Calcr	A	T	6: 3,707,592 (GRCm39)	I236N	probably benign	Het
Cass4	G	A	2: 172,258,107 (GRCm39)	G35E	probably damaging	Het
Chmp6	T	C	11: 119,807,517 (GRCm39)	I120T	probably benign	Het
Col13a1	A	G	10: 61,684,919 (GRCm39)		probably benign	Het
Cstdc4	T	A	16: 36,004,631 (GRCm39)	M1K	probably null	Het
Ddhd2	T	A	8: 26,238,629 (GRCm39)	L328F	probably damaging	Het
Defa40	T	A	8: 21,740,359 (GRCm39)		probably null	Het
Dnmt3l	A	G	10: 77,887,860 (GRCm39)	D123G	possibly damaging	Het
Eea1	T	A	10: 95,838,810 (GRCm39)	V287E	possibly damaging	Het
Efcc1	A	G	6: 87,708,164 (GRCm39)	N97S	probably benign	Het
Exd1	A	G	2: 119,369,262 (GRCm39)	S118P	probably benign	Het
Ext2	G	T	2: 93,642,317 (GRCm39)	T184K	probably benign	Het
Fam186a	G	A	15: 99,864,705 (GRCm39)	Q42*	probably null	Het
Gbp2	A	T	3: 142,337,843 (GRCm39)	I320L	probably benign	Het
Gramd2a	G	A	9: 59,615,299 (GRCm39)	G13R	probably benign	Het
H2-Q5	T	C	17: 35,613,115 (GRCm39)	M5T	unknown	Het
Jak3	C	T	8: 72,131,344 (GRCm39)	L70F	probably damaging	Het
Lhpp	G	A	7: 132,307,364 (GRCm39)	V254M	probably damaging	Het
Lig1	T	A	7: 13,030,184 (GRCm39)	V387E	possibly damaging	Het
Lipo3	T	C	19: 33,755,093 (GRCm39)		probably benign	Het
Lrrc8b	C	T	5: 105,629,208 (GRCm39)	S518L	probably benign	Het
Ncf4	A	G	15: 78,135,177 (GRCm39)	K78R	probably benign	Het
Nrap	A	T	19: 56,330,601 (GRCm39)	C1118*	probably null	Het
Nubp2	A	G	17: 25,104,772 (GRCm39)	V23A	probably damaging	Het
Or4l1	A	T	14: 50,166,497 (GRCm39)	F168Y	probably damaging	Het
Or6c219	A	T	10: 129,781,780 (GRCm39)	D50E	possibly damaging	Het
Or8g55	T	C	9: 39,785,392 (GRCm39)	S274P	possibly damaging	Het
Pdzd7	G	A	19: 45,025,428 (GRCm39)	P356S	probably benign	Het
Rttn	T	C	18: 89,056,070 (GRCm39)	V984A	probably damaging	Het
Ryr3	A	G	2: 112,516,925 (GRCm39)	S3334P	probably damaging	Het
Senp7	G	A	16: 55,959,468 (GRCm39)		probably null	Het
Slc25a3	A	C	10: 90,957,903 (GRCm39)	Y50D	probably benign	Het
Slc35e2	C	T	4: 155,694,483 (GRCm39)	P10L	probably benign	Het
Slc38a2	A	T	15: 96,592,970 (GRCm39)	S163T	probably benign	Het
Sp110	A	C	1: 85,505,050 (GRCm39)	F434C	probably benign	Het
Stam2	A	T	2: 52,610,922 (GRCm39)	C4*	probably null	Het
Taf1a	A	G	1: 183,177,272 (GRCm39)	D50G	possibly damaging	Het
Taf6l	A	T	19: 8,759,995 (GRCm39)	Y106N	possibly damaging	Het
Taf7l2	T	C	10: 115,948,674 (GRCm39)	E284G	probably damaging	Het
Tbx20	G	A	9: 24,636,816 (GRCm39)	Q424*	probably null	Het
Tex10	A	G	4: 48,433,295 (GRCm39)	V829A	possibly damaging	Het
Tgfbr3	T	C	5: 107,257,474 (GRCm39)		probably benign	Het
Tnfsf10	G	T	3: 27,389,742 (GRCm39)	V268F	probably damaging	Het
Trrap	A	G	5: 144,767,755 (GRCm39)	T2571A	probably benign	Het

Other mutations in Narf

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00402:Narf	APN	11	121,129,344 (GRCm39)	critical splice donor site	probably null
R0128:Narf	UTSW	11	121,141,662 (GRCm39)	missense	probably damaging	1.00
R0542:Narf	UTSW	11	121,143,690 (GRCm39)	missense	probably damaging	1.00
R1326:Narf	UTSW	11	121,133,379 (GRCm39)	missense	probably damaging	1.00
R2035:Narf	UTSW	11	121,129,326 (GRCm39)	missense	probably benign	0.00
R2049:Narf	UTSW	11	121,141,195 (GRCm39)	nonsense	probably null
R2078:Narf	UTSW	11	121,136,220 (GRCm39)	missense	probably benign	0.03
R3711:Narf	UTSW	11	121,137,764 (GRCm39)	nonsense	probably null
R3967:Narf	UTSW	11	121,129,247 (GRCm39)	missense	possibly damaging	0.92
R3968:Narf	UTSW	11	121,129,247 (GRCm39)	missense	possibly damaging	0.92
R3970:Narf	UTSW	11	121,129,247 (GRCm39)	missense	possibly damaging	0.92
R4128:Narf	UTSW	11	121,141,261 (GRCm39)	splice site	probably null
R4913:Narf	UTSW	11	121,135,469 (GRCm39)	missense	probably damaging	1.00
R4928:Narf	UTSW	11	121,135,765 (GRCm39)	missense	possibly damaging	0.87
R4946:Narf	UTSW	11	121,141,179 (GRCm39)	missense	possibly damaging	0.71
R5404:Narf	UTSW	11	121,133,452 (GRCm39)	missense	probably benign	0.00
R6753:Narf	UTSW	11	121,133,452 (GRCm39)	missense	probably benign	0.00
R6912:Narf	UTSW	11	121,129,287 (GRCm39)	missense	probably benign	0.00
R7311:Narf	UTSW	11	121,139,976 (GRCm39)	missense	probably benign	0.31
R8056:Narf	UTSW	11	121,136,170 (GRCm39)	missense	possibly damaging	0.89
R8559:Narf	UTSW	11	121,141,258 (GRCm39)	critical splice donor site	probably null
R9021:Narf	UTSW	11	121,136,209 (GRCm39)	missense	probably damaging	0.98
X0011:Narf	UTSW	11	121,141,698 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTCTGGGGTGATAAGAGGCAAC -3'
(R):5'- TGCTCCTGTGTCCTTGAAAG -3'

Sequencing Primer
(F):5'- GGTGAAGCATGCCTTTAATCCCAG -3'
(R):5'- CCTGTGTCCTTGAAAGTTGAAC -3'

Posted On

2016-12-15