Incidental Mutation 'R5812:Rasgef1c'
ID447566
Institutional Source Beutler Lab
Gene Symbol Rasgef1c
Ensembl Gene ENSMUSG00000020374
Gene NameRasGEF domain family, member 1C
Synonyms
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.108) question?
Stock #R5812 (G1)
Quality Score209
Status Not validated
Chromosome11
Chromosomal Location49901835-49980994 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) A to G at 49957143 bp
ZygosityHeterozygous
Amino Acid Change Aspartic acid to Glycine at position 35 (D35G)
Ref Sequence ENSEMBL: ENSMUSP00000090829 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000063444] [ENSMUST00000093141] [ENSMUST00000093142]
Predicted Effect probably benign
Transcript: ENSMUST00000063444
AA Change: D38G

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
SMART Domains Protein: ENSMUSP00000065619
Gene: ENSMUSG00000020374
AA Change: D38G

DomainStartEndE-ValueType
Pfam:RasGEF_N 40 141 2.4e-14 PFAM
RasGEF 199 450 4.54e-67 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000093141
AA Change: D35G

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
SMART Domains Protein: ENSMUSP00000090828
Gene: ENSMUSG00000020374
AA Change: D35G

DomainStartEndE-ValueType
Blast:RasGEFN 35 123 9e-30 BLAST
RasGEF 155 406 4.54e-67 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000093142
AA Change: D35G

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)
SMART Domains Protein: ENSMUSP00000090829
Gene: ENSMUSG00000020374
AA Change: D35G

DomainStartEndE-ValueType
Pfam:RasGEF_N 38 138 8.5e-14 PFAM
RasGEF 196 447 4.54e-67 SMART
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.4%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 41 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930579F01Rik A G 3: 138,176,538 S9P probably damaging Het
Acsl5 G A 19: 55,294,836 V615I probably benign Het
Ankk1 T C 9: 49,426,853 K47E probably benign Het
Ankrd11 A T 8: 122,893,805 probably null Het
Bcl9l T C 9: 44,506,644 V593A probably benign Het
Cadps T C 14: 12,376,685 I1271V probably benign Het
Ccdc125 T C 13: 100,684,304 W152R probably damaging Het
Cep192 T C 18: 67,851,737 V1606A possibly damaging Het
Csgalnact1 T C 8: 68,401,384 N255S probably benign Het
Cxxc5 T A 18: 35,859,056 V170E probably damaging Het
Defb6 C T 8: 19,228,094 R61C possibly damaging Het
Dnah10 T A 5: 124,747,746 N655K probably benign Het
Fry G A 5: 150,399,671 A1096T probably damaging Het
Gli1 C T 10: 127,337,415 G125S probably damaging Het
Gm5538 T A 3: 59,747,272 Y176N probably damaging Het
Igkv14-126 A T 6: 67,896,440 I51F possibly damaging Het
Itgb4 C T 11: 115,984,157 R447W probably benign Het
Jtb T C 3: 90,233,977 S87P probably benign Het
Kdm6b A T 11: 69,405,929 I504N probably damaging Het
Lin9 T A 1: 180,669,198 L351I probably benign Het
Map2k4 A G 11: 65,735,205 I136T probably damaging Het
March4 T C 1: 72,428,917 T319A probably benign Het
Nr2e3 TCCATCGGAGTGTTCCC TC 9: 59,943,418 probably benign Het
Nt5e T C 9: 88,369,055 V459A probably damaging Het
Ogdhl A G 14: 32,332,865 K257E probably damaging Het
Olfr1 AGCGGTCGTAGGC AGC 11: 73,395,654 probably null Het
Olfr117 A G 17: 37,659,739 L198P probably damaging Het
Osmr A T 15: 6,837,059 V378D probably damaging Het
Pcdhb18 G A 18: 37,490,484 R289Q probably benign Het
Pdzd7 G T 19: 45,036,871 T395K probably damaging Het
Rbm19 T C 5: 120,141,577 F770L probably damaging Het
Rit2 C A 18: 30,975,461 C157F probably damaging Het
Slc22a22 A G 15: 57,256,473 probably null Het
Slc8b1 T C 5: 120,513,338 probably null Het
Speer2 C A 16: 69,858,895 R14S possibly damaging Het
Tas2r105 C A 6: 131,686,873 L197F possibly damaging Het
Tmprss11b T A 5: 86,665,098 H113L possibly damaging Het
Ttbk2 G A 2: 120,822,559 P64S probably damaging Het
Urb1 A T 16: 90,804,537 H115Q probably damaging Het
Vps13c T A 9: 67,982,495 probably benign Het
Zbtb39 T A 10: 127,741,560 M1K probably null Het
Other mutations in Rasgef1c
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02243:Rasgef1c APN 11 49957390 missense possibly damaging 0.57
IGL02983:Rasgef1c APN 11 49957049 missense possibly damaging 0.95
IGL03076:Rasgef1c APN 11 49970246 missense probably damaging 1.00
IGL03163:Rasgef1c APN 11 49971373 missense possibly damaging 0.96
R0324:Rasgef1c UTSW 11 49961230 critical splice donor site probably null
R1955:Rasgef1c UTSW 11 49975715 missense possibly damaging 0.67
R4204:Rasgef1c UTSW 11 49958708 missense probably benign 0.00
R4705:Rasgef1c UTSW 11 49978467 missense probably benign 0.42
R4952:Rasgef1c UTSW 11 49979512 missense probably damaging 0.99
R5084:Rasgef1c UTSW 11 49969505 missense probably damaging 1.00
R5121:Rasgef1c UTSW 11 49960429 missense probably damaging 1.00
R5564:Rasgef1c UTSW 11 49957107 missense probably benign 0.09
R5801:Rasgef1c UTSW 11 49970056 missense probably damaging 1.00
R6601:Rasgef1c UTSW 11 49971419 missense probably damaging 0.99
R7751:Rasgef1c UTSW 11 49970293 missense probably damaging 0.99
R8112:Rasgef1c UTSW 11 49967401 missense probably damaging 1.00
X0027:Rasgef1c UTSW 11 49969502 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGATCACTGAACAAAAGTGTGG -3'
(R):5'- ATGTGTCATCAGCCTGACCC -3'

Sequencing Primer
(F):5'- CAGTCAGAGGCATAGTTCTCCAG -3'
(R):5'- GTCATCAGCCTGACCCGACTC -3'
Posted On2016-12-15