Incidental Mutation 'R5775:Pgpep1'
ID 448730
Institutional Source Beutler Lab
Gene Symbol Pgpep1
Ensembl Gene ENSMUSG00000056204
Gene Name pyroglutamyl-peptidase I
Synonyms PGP-I, Pcp, 2810003H13Rik
MMRRC Submission 043374-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.084) question?
Stock # R5775 (G1)
Quality Score 121
Status Validated
Chromosome 8
Chromosomal Location 71099085-71113038 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 71105101 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Methionine at position 53 (T53M)
Ref Sequence ENSEMBL: ENSMUSP00000148119 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000070173] [ENSMUST00000209768] [ENSMUST00000210193] [ENSMUST00000210307] [ENSMUST00000211715]
AlphaFold Q9ESW8
Predicted Effect probably damaging
Transcript: ENSMUST00000070173
AA Change: T53M

PolyPhen 2 Score 0.979 (Sensitivity: 0.75; Specificity: 0.96)
SMART Domains Protein: ENSMUSP00000070778
Gene: ENSMUSG00000056204
AA Change: T53M

DomainStartEndE-ValueType
Pfam:Peptidase_C15 6 185 1.2e-21 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000209768
Predicted Effect probably benign
Transcript: ENSMUST00000210193
Predicted Effect probably benign
Transcript: ENSMUST00000210307
Predicted Effect noncoding transcript
Transcript: ENSMUST00000210459
Predicted Effect probably benign
Transcript: ENSMUST00000210786
Predicted Effect noncoding transcript
Transcript: ENSMUST00000211526
Predicted Effect probably damaging
Transcript: ENSMUST00000211715
AA Change: T53M

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
Meta Mutation Damage Score 0.6467 question?
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.4%
  • 20x: 95.7%
Validation Efficiency 97% (59/61)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The gene encodes a cysteine protease and member of the peptidase C15 family of proteins. The encoded protein cleaves amino terminal pyroglutamate residues from protein substrates including thyrotropin-releasing hormone and other neuropeptides. Expression of this gene may be downregulated in colorectal cancer, while activity of the encoded protein may be negatively correlated with cancer progression in colorectal cancer patients. Activity of the encoded protease may also be altered in other disease states including in liver cirrhosis, which is associated with reduced protease activity, and in necrozoospermia, which is associated with elevated protease activity. [provided by RefSeq, Jul 2016]
Allele List at MGI
Other mutations in this stock
Total: 56 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam6a A G 12: 113,509,886 (GRCm39) D753G possibly damaging Het
Arpc2 T A 1: 74,295,108 (GRCm39) probably null Het
Atxn2 C T 5: 121,951,512 (GRCm39) T619M probably damaging Het
Cacna1s T C 1: 136,035,860 (GRCm39) Y1120H probably damaging Het
Calm5 T C 13: 3,904,435 (GRCm39) L20S probably damaging Het
Carmil1 T C 13: 24,460,520 (GRCm39) I20V probably benign Het
Cd177 T C 7: 24,451,693 (GRCm39) E441G probably damaging Het
Cd63 T A 10: 128,746,299 (GRCm39) C9S probably damaging Het
Cep250 A C 2: 155,811,294 (GRCm39) D380A possibly damaging Het
Col5a3 G T 9: 20,712,368 (GRCm39) P509Q unknown Het
Cyp11b2 A G 15: 74,725,327 (GRCm39) V264A probably benign Het
Dennd6a T A 14: 26,340,528 (GRCm39) L214* probably null Het
Dna2 A G 10: 62,785,021 (GRCm39) N46S possibly damaging Het
Elovl1 G A 4: 118,288,094 (GRCm39) V77I probably benign Het
Eml1 A T 12: 108,472,813 (GRCm39) Y207F probably damaging Het
Epha6 C T 16: 59,639,357 (GRCm39) R839Q possibly damaging Het
Erlec1 A T 11: 30,893,848 (GRCm39) S105T probably benign Het
Esp3 T A 17: 40,944,468 (GRCm39) S37T possibly damaging Het
Foxh1 G A 15: 76,554,049 (GRCm39) A8V probably benign Het
Fut1 A C 7: 45,268,886 (GRCm39) D280A probably damaging Het
Gm13998 G T 2: 119,708,892 (GRCm39) noncoding transcript Het
Gm7247 C T 14: 51,601,805 (GRCm39) S26F probably benign Het
H2az1 T C 3: 137,571,380 (GRCm39) Y61H probably damaging Het
Kcns1 T C 2: 164,006,686 (GRCm39) I426V probably damaging Het
Kdm4c T G 4: 74,277,668 (GRCm39) V774G probably damaging Het
Mrc2 G A 11: 105,228,639 (GRCm39) V673I probably benign Het
Mtnr1b G A 9: 15,774,168 (GRCm39) A297V possibly damaging Het
Or5d43 A T 2: 88,105,045 (GRCm39) M116K probably damaging Het
Or8b40 A T 9: 38,027,423 (GRCm39) E110D probably damaging Het
Osbpl5 A T 7: 143,258,266 (GRCm39) V346D probably benign Het
Pdzrn4 A T 15: 92,655,562 (GRCm39) E485V probably damaging Het
Pigo T C 4: 43,023,475 (GRCm39) D233G probably damaging Het
Pmm1 A T 15: 81,836,156 (GRCm39) I152N probably benign Het
Pot1a A T 6: 25,757,297 (GRCm39) probably null Het
Ppp1r12b G T 1: 134,803,780 (GRCm39) L460I probably benign Het
Prrc2a T C 17: 35,377,463 (GRCm39) D565G unknown Het
Psd C A 19: 46,303,211 (GRCm39) E724* probably null Het
Rasa2 C T 9: 96,459,521 (GRCm39) probably null Het
Rsbn1 A T 3: 103,869,888 (GRCm39) Q783L possibly damaging Het
Ryr2 T C 13: 11,784,848 (GRCm39) Y1035C probably damaging Het
Sec24d C T 3: 123,084,109 (GRCm39) A96V probably benign Het
Sec61a2 A T 2: 5,887,585 (GRCm39) probably null Het
Sec62 A G 3: 30,847,436 (GRCm39) probably benign Het
Tcstv2a T A 13: 120,725,475 (GRCm39) C46* probably null Het
Tmem132b T A 5: 125,715,394 (GRCm39) probably null Het
Tnip3 A G 6: 65,591,741 (GRCm39) S247G probably benign Het
Traf3 A G 12: 111,219,162 (GRCm39) K263R possibly damaging Het
Tubgcp3 A T 8: 12,675,056 (GRCm39) I713N probably damaging Het
Unc5c A G 3: 141,534,281 (GRCm39) E860G probably damaging Het
Usp44 A G 10: 93,681,840 (GRCm39) S97G possibly damaging Het
Vmn2r129 G T 4: 156,686,692 (GRCm39) noncoding transcript Het
Vps37a A G 8: 40,982,160 (GRCm39) H109R probably damaging Het
Wfikkn2 G T 11: 94,129,114 (GRCm39) D342E probably benign Het
Zfp354b A T 11: 50,813,647 (GRCm39) F426Y probably benign Het
Zfp462 C A 4: 55,010,590 (GRCm39) T852N probably damaging Het
Zfp987 T G 4: 146,061,505 (GRCm39) S312R probably benign Het
Other mutations in Pgpep1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02565:Pgpep1 APN 8 71,105,119 (GRCm39) missense probably damaging 1.00
R0365:Pgpep1 UTSW 8 71,105,174 (GRCm39) splice site probably null
R0413:Pgpep1 UTSW 8 71,110,100 (GRCm39) missense probably damaging 1.00
R0603:Pgpep1 UTSW 8 71,103,283 (GRCm39) missense probably benign 0.03
R5547:Pgpep1 UTSW 8 71,105,069 (GRCm39) missense probably benign 0.00
R5773:Pgpep1 UTSW 8 71,105,101 (GRCm39) missense probably damaging 1.00
R6056:Pgpep1 UTSW 8 71,105,101 (GRCm39) missense probably damaging 1.00
R6057:Pgpep1 UTSW 8 71,105,101 (GRCm39) missense probably damaging 1.00
R6573:Pgpep1 UTSW 8 71,103,265 (GRCm39) missense probably benign 0.00
R7544:Pgpep1 UTSW 8 71,103,168 (GRCm39) missense unknown
R9301:Pgpep1 UTSW 8 71,103,418 (GRCm39) missense probably damaging 1.00
R9502:Pgpep1 UTSW 8 71,103,899 (GRCm39) missense probably benign 0.02
Predicted Primers PCR Primer
(F):5'- CAGGGCCCTGTAAGGTGTG -3'
(R):5'- GTGGGTTATGTGAAGTCAAGACTC -3'

Sequencing Primer
(F):5'- TGAATCCTTAGTTACCAGGGAGC -3'
(R):5'- CAGAGTCTCATGCAGCCAAGG -3'
Posted On 2016-12-15