Mutagenetix > Incidental Mutation

Incidental Mutation 'R5802:Trmt10b'

448774

Institutional Source

Beutler Lab

Gene Symbol

Trmt10b

Ensembl Gene

ENSMUSG00000035601

Gene Name

tRNA methyltransferase 10B

Synonyms

MMRRC Submission

043391-MU

Accession Numbers

Is this an essential gene?

Possibly non essential (E-score: 0.256) question?

Stock #

R5802 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

45297127-45316131 bp(+) (GRCm38)

Type of Mutation

unclassified

DNA Base Change (assembly)

T to A at 45314236 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030003] [ENSMUST00000044673] [ENSMUST00000107800]

AlphaFold

Q9D075

Predicted Effect

probably benign
Transcript: ENSMUST00000030003

SMART Domains

Protein: ENSMUSP00000030003
Gene: ENSMUSG00000028322

Domain	Start	End	E-Value	Type
Blast:S1	111	180	4e-36	BLAST
Pfam:KH_6	196	243	3.6e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000044673

SMART Domains

Protein: ENSMUSP00000041052
Gene: ENSMUSG00000035601

Domain	Start	End	E-Value	Type
low complexity region	76	95	N/A	INTRINSIC
low complexity region	110	122	N/A	INTRINSIC
Pfam:tRNA_m1G_MT	135	308	2.6e-46	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107800

SMART Domains

Protein: ENSMUSP00000103429
Gene: ENSMUSG00000035601

Domain	Start	End	E-Value	Type
low complexity region	76	95	N/A	INTRINSIC
low complexity region	108	120	N/A	INTRINSIC
Pfam:tRNA_m1G_MT	133	306	1.6e-46	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126972

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130843

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143111

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145756

Predicted Effect

probably benign
Transcript: ENSMUST00000152056

SMART Domains

Protein: ENSMUSP00000115532
Gene: ENSMUSG00000028322

Domain	Start	End	E-Value	Type
Blast:S1	24	93	8e-38	BLAST
Pfam:KH_6	109	145	8e-13	PFAM

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.7%

Validation Efficiency

97% (63/65)

Allele List at MGI

Other mutations in this stock

Total: 58 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A830018L16Rik	A	T	1: 11,950,964	D383V	probably damaging	Het
Abca4	A	T	3: 122,054,232	L67F	probably damaging	Het
Abcc9	C	A	6: 142,656,676		probably null	Het
Atp2a3	T	C	11: 72,972,882	V175A	probably damaging	Het
B3galt4	T	A	17: 33,950,757	D169V	probably damaging	Het
Bsn	C	T	9: 108,113,009	R1848Q	possibly damaging	Het
Camkk2	T	C	5: 122,734,244	E90G	probably damaging	Het
Cdon	T	A	9: 35,454,420	I155N	probably damaging	Het
Cep70	A	G	9: 99,296,405	N519D	probably damaging	Het
Clgn	T	C	8: 83,425,614	S582P	probably damaging	Het
Cnga3	T	C	1: 37,260,925	F280S	probably damaging	Het
Dennd4c	C	T	4: 86,811,453	T764M	probably benign	Het
Dis3	A	T	14: 99,099,664	S4T	probably damaging	Het
Dlgap1	T	C	17: 70,766,091		probably null	Het
Dnah17	C	T	11: 118,036,446	V3839I	possibly damaging	Het
Dnajc1	A	G	2: 18,284,739	Y286H	probably benign	Het
Dynap	T	A	18: 70,241,002	D151V	unknown	Het
Ednrb	A	G	14: 103,821,714	F292S	probably damaging	Het
Eef1a1	A	G	9: 78,479,036	S396P	probably damaging	Het
Fancg	A	G	4: 43,006,582	F324S	probably benign	Het
Fbxw11	T	A	11: 32,711,790	S56T	probably benign	Het
Gm13178	T	A	4: 144,703,636	D261V	probably damaging	Het
Gm14409	T	C	2: 177,265,256	T150A	possibly damaging	Het
Gm17535	G	C	9: 3,035,758	V209L	probably benign	Homo
Gm20767	G	A	13: 120,154,913	S96N	possibly damaging	Het
Gm5592	C	T	7: 41,219,105		probably benign	Het
Gm7030	A	G	17: 36,111,287		probably benign	Het
Gpr137	C	T	19: 6,942,005	W51*	probably null	Het
Hbb-bs	T	C	7: 103,826,672	Y146C	probably damaging	Het
Herc1	G	T	9: 66,462,878	C2982F	probably damaging	Het
Hnrnpa3	T	A	2: 75,665,056	N309K	unknown	Het
Hydin	A	T	8: 110,452,060	I1096F	possibly damaging	Het
Klf12	A	G	14: 100,022,894	V133A	probably benign	Het
Lats2	A	T	14: 57,694,418	Y848N	probably damaging	Het
Loxl3	A	G	6: 83,049,289	T453A	possibly damaging	Het
Ltn1	T	G	16: 87,415,681	H664P	probably benign	Het
Lypd6	C	T	2: 50,173,601	T40I	probably benign	Het
Nbeal1	A	T	1: 60,272,221	T1817S	probably benign	Het
Nub1	A	C	5: 24,702,441	Y350S	possibly damaging	Het
Pbp2	A	G	6: 135,309,876	Y158H	possibly damaging	Het
Ptpru	C	T	4: 131,788,377	E827K	possibly damaging	Het
Rap1a	A	G	3: 105,745,936	Y32H	probably damaging	Het
Raph1	T	C	1: 60,488,673	N1143S	possibly damaging	Het
Rbl1	T	C	2: 157,161,433	T859A	probably benign	Het
Rom1	A	G	19: 8,928,824	L117P	probably damaging	Het
Senp6	T	C	9: 80,118,644		probably benign	Het
Sirpb1c	T	C	3: 15,832,076	M379V	probably benign	Het
Slc6a4	C	T	11: 77,019,236	T439M	probably damaging	Het
Srsf12	G	T	4: 33,230,929	R141L	probably damaging	Het
Stk10	C	T	11: 32,596,748	P335L	probably benign	Het
Tecpr1	A	T	5: 144,206,546	N670K	probably benign	Het
Tgds	T	C	14: 118,132,707	E8G	probably benign	Het
Tmem129	A	G	5: 33,657,716	S38P	probably damaging	Het
Trappc9	T	C	15: 72,685,339	E812G	probably damaging	Het
Wapl	A	G	14: 34,692,320	T380A	probably damaging	Het
Xylt1	A	T	7: 117,656,691	T829S	probably benign	Het
Zc3h6	C	T	2: 129,015,559	P666L	possibly damaging	Het
Zfp703	C	T	8: 26,979,205	P299L	probably damaging	Het

Other mutations in Trmt10b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01064:Trmt10b	APN	4	45314347	missense	possibly damaging	0.91
IGL01743:Trmt10b	APN	4	45305879	missense	probably damaging	1.00
IGL02012:Trmt10b	APN	4	45315045	missense	probably benign	0.00
IGL02174:Trmt10b	APN	4	45308508	missense	possibly damaging	0.88
R0454:Trmt10b	UTSW	4	45304286	missense	probably damaging	1.00
R0506:Trmt10b	UTSW	4	45304306	missense	probably damaging	0.98
R1757:Trmt10b	UTSW	4	45307946	missense	probably damaging	1.00
R1962:Trmt10b	UTSW	4	45314378	nonsense	probably null
R2944:Trmt10b	UTSW	4	45300445	start codon destroyed	probably null	0.99
R4781:Trmt10b	UTSW	4	45305817	missense	probably damaging	0.98
R6400:Trmt10b	UTSW	4	45308562	missense	probably damaging	1.00
R6460:Trmt10b	UTSW	4	45314322	missense	possibly damaging	0.81
R7165:Trmt10b	UTSW	4	45308549	missense	probably damaging	1.00
R7182:Trmt10b	UTSW	4	45308520	missense	probably benign	0.36
R8399:Trmt10b	UTSW	4	45305870	missense	possibly damaging	0.70
R8805:Trmt10b	UTSW	4	45301281	missense	probably benign	0.31
R9778:Trmt10b	UTSW	4	45314374	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCACCATATTGATTTCCAAAGTGGC -3'
(R):5'- AGAAGCACATTGGGTTTGGCTG -3'

Sequencing Primer
(F):5'- ATTGATTTCCAAAGTGGCCGCAG -3'
(R):5'- CACATTGGGTTTGGCTGAGTAGTAC -3'

Posted On

2016-12-15