Incidental Mutation 'R5819:Ruvbl1'
| ID |
449220 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Ruvbl1
|
| Ensembl Gene |
ENSMUSG00000030079 |
| Gene Name |
RuvB-like AAA ATPase 1 |
| Synonyms |
Pontin52, 2510009G06Rik, Tip49a |
| MMRRC Submission |
043399-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.970)
|
| Stock # |
R5819 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
6 |
| Chromosomal Location |
88442391-88474548 bp(+) (GRCm39) |
| Type of Mutation |
splice site (3 bp from exon) |
| DNA Base Change (assembly) |
A to C
at 88460097 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000032165
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000032165]
[ENSMUST00000129035]
|
| AlphaFold |
P60122 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000032165
|
| SMART Domains |
Protein: ENSMUSP00000032165
Gene: ENSMUSG00000030079
| Domain | Start | End | E-Value | Type |
|---|
|
AAA
|
62 |
365 |
1.51e-11 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000129035
|
| SMART Domains |
Protein: ENSMUSP00000117925
Gene: ENSMUSG00000030079
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:AAA_19
|
1 |
77 |
1.3e-7 |
PFAM |
|
Pfam:TIP49
|
1 |
134 |
2.7e-60 |
PFAM |
|
Pfam:RuvB_N
|
2 |
52 |
5.5e-7 |
PFAM |
|
Pfam:AAA
|
6 |
80 |
1.5e-10 |
PFAM |
|
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 98.3%
- 20x: 95.2%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that has both DNA-dependent ATPase and DNA helicase activities and belongs to the ATPases associated with diverse cellular activities (AAA+) protein family. The encoded protein associates with several multisubunit transcriptional complexes and with protein complexes involved in both ATP-dependent remodeling and histone modification. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]
PHENOTYPE: Mice homozygous for a null allele show impaired proliferation of the pluripotent inner mass cells and embryonic lethality before implantation. Conditional ablation of this gene in hematopoietic tissues leads to bone marrow failure involving apoptotic loss of hematopoietic stem cells. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 48 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca4 |
A |
T |
3: 121,930,630 (GRCm39) |
I1376F |
probably damaging |
Het |
| Aggf1 |
T |
C |
13: 95,488,129 (GRCm39) |
N673D |
possibly damaging |
Het |
| Avil |
T |
C |
10: 126,845,867 (GRCm39) |
F372S |
probably damaging |
Het |
| Bltp1 |
A |
T |
3: 37,102,749 (GRCm39) |
M4863L |
probably benign |
Het |
| Bod1l |
T |
A |
5: 41,989,948 (GRCm39) |
E258D |
probably benign |
Het |
| Chek1 |
T |
A |
9: 36,621,701 (GRCm39) |
H420L |
probably benign |
Het |
| Cyfip1 |
A |
G |
7: 55,528,899 (GRCm39) |
I260M |
probably damaging |
Het |
| Dclk1 |
G |
A |
3: 55,397,285 (GRCm39) |
V524I |
probably damaging |
Het |
| Efr3b |
T |
C |
12: 4,042,965 (GRCm39) |
M102V |
probably benign |
Het |
| Erc2 |
T |
A |
14: 27,863,326 (GRCm39) |
I517N |
probably damaging |
Het |
| Fubp1 |
T |
C |
3: 151,926,190 (GRCm39) |
I305T |
probably damaging |
Het |
| Galc |
T |
A |
12: 98,182,520 (GRCm39) |
D443V |
probably benign |
Het |
| Galnt4 |
T |
A |
10: 98,945,892 (GRCm39) |
I539N |
probably damaging |
Het |
| Gm17093 |
G |
T |
14: 44,758,986 (GRCm39) |
M169I |
unknown |
Het |
| Htra1 |
T |
C |
7: 130,583,469 (GRCm39) |
F363S |
probably damaging |
Het |
| Itprid1 |
A |
T |
6: 55,874,876 (GRCm39) |
K275N |
probably benign |
Het |
| Klhdc8b |
G |
A |
9: 108,328,261 (GRCm39) |
P64S |
probably benign |
Het |
| Kmt2c |
A |
G |
5: 25,614,130 (GRCm39) |
|
probably null |
Het |
| Mettl21c |
T |
G |
1: 44,048,882 (GRCm39) |
K222Q |
probably damaging |
Het |
| Mga |
A |
C |
2: 119,771,744 (GRCm39) |
M1535L |
possibly damaging |
Het |
| Mov10 |
C |
T |
3: 104,708,828 (GRCm39) |
G395D |
probably damaging |
Het |
| Ms4a10 |
C |
A |
19: 10,946,054 (GRCm39) |
A26S |
probably benign |
Het |
| Mtcl3 |
A |
T |
10: 29,073,269 (GRCm39) |
M854L |
probably benign |
Het |
| Naaladl1 |
A |
G |
19: 6,159,684 (GRCm39) |
N372D |
possibly damaging |
Het |
| Optc |
T |
C |
1: 133,825,617 (GRCm39) |
D303G |
probably damaging |
Het |
| Or4f52 |
A |
T |
2: 111,061,304 (GRCm39) |
I278N |
probably damaging |
Het |
| Osmr |
C |
A |
15: 6,845,268 (GRCm39) |
V833L |
probably benign |
Het |
| Phf14 |
A |
G |
6: 11,997,251 (GRCm39) |
|
probably null |
Het |
| Pjvk |
A |
G |
2: 76,488,713 (GRCm39) |
I295V |
probably benign |
Het |
| Plppr4 |
T |
A |
3: 117,119,513 (GRCm39) |
I299L |
possibly damaging |
Het |
| Prkg1 |
A |
G |
19: 31,563,072 (GRCm39) |
S110P |
probably benign |
Het |
| Ptprq |
T |
A |
10: 107,555,744 (GRCm39) |
|
probably benign |
Het |
| Rarb |
T |
G |
14: 16,443,820 (GRCm38) |
N156T |
possibly damaging |
Het |
| Rgl3 |
A |
T |
9: 21,892,898 (GRCm39) |
|
probably null |
Het |
| S1pr1 |
G |
T |
3: 115,505,789 (GRCm39) |
C268* |
probably null |
Het |
| Sbk3 |
T |
C |
7: 4,972,996 (GRCm39) |
D58G |
probably benign |
Het |
| Scgb2b3 |
T |
A |
7: 31,059,639 (GRCm39) |
H45L |
possibly damaging |
Het |
| Smim8 |
TTTAATGAAGAGCT |
TT |
4: 34,771,261 (GRCm39) |
|
probably benign |
Het |
| Tas2r119 |
T |
C |
15: 32,177,452 (GRCm39) |
L6P |
probably damaging |
Het |
| Tcp11 |
A |
T |
17: 28,288,210 (GRCm39) |
F339L |
probably damaging |
Het |
| Tdpoz8 |
A |
G |
3: 92,981,039 (GRCm39) |
Y19C |
probably damaging |
Het |
| Tmprss5 |
T |
A |
9: 49,025,779 (GRCm39) |
|
probably null |
Het |
| Trnau1ap |
A |
G |
4: 132,052,521 (GRCm39) |
|
probably benign |
Het |
| Trp53bp1 |
G |
A |
2: 121,038,873 (GRCm39) |
R1397* |
probably null |
Het |
| Ubqln3 |
G |
A |
7: 103,790,674 (GRCm39) |
P472L |
probably benign |
Het |
| Vmn2r13 |
T |
A |
5: 109,321,966 (GRCm39) |
M244L |
possibly damaging |
Het |
| Zfp777 |
C |
T |
6: 48,014,522 (GRCm39) |
E395K |
probably damaging |
Het |
| Zfyve27 |
A |
G |
19: 42,171,935 (GRCm39) |
S156G |
probably benign |
Het |
|
| Other mutations in Ruvbl1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00230:Ruvbl1
|
APN |
6 |
88,461,385 (GRCm39) |
unclassified |
probably benign |
|
|
IGL00473:Ruvbl1
|
APN |
6 |
88,468,550 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01768:Ruvbl1
|
APN |
6 |
88,474,253 (GRCm39) |
missense |
probably benign |
|
|
IGL03354:Ruvbl1
|
APN |
6 |
88,456,197 (GRCm39) |
nonsense |
probably null |
|
|
R0106:Ruvbl1
|
UTSW |
6 |
88,450,182 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0106:Ruvbl1
|
UTSW |
6 |
88,450,182 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0145:Ruvbl1
|
UTSW |
6 |
88,461,441 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R0676:Ruvbl1
|
UTSW |
6 |
88,450,182 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1448:Ruvbl1
|
UTSW |
6 |
88,444,551 (GRCm39) |
missense |
probably benign |
0.05 |
|
R1561:Ruvbl1
|
UTSW |
6 |
88,456,136 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1574:Ruvbl1
|
UTSW |
6 |
88,456,136 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1623:Ruvbl1
|
UTSW |
6 |
88,462,752 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2113:Ruvbl1
|
UTSW |
6 |
88,460,003 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2372:Ruvbl1
|
UTSW |
6 |
88,462,779 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R2397:Ruvbl1
|
UTSW |
6 |
88,442,534 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
R2894:Ruvbl1
|
UTSW |
6 |
88,456,114 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R4037:Ruvbl1
|
UTSW |
6 |
88,450,117 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4604:Ruvbl1
|
UTSW |
6 |
88,462,887 (GRCm39) |
missense |
probably benign |
|
|
R4684:Ruvbl1
|
UTSW |
6 |
88,468,581 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4714:Ruvbl1
|
UTSW |
6 |
88,461,412 (GRCm39) |
missense |
possibly damaging |
0.61 |
|
R4835:Ruvbl1
|
UTSW |
6 |
88,474,211 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R4939:Ruvbl1
|
UTSW |
6 |
88,460,021 (GRCm39) |
splice site |
probably null |
|
|
R5114:Ruvbl1
|
UTSW |
6 |
88,474,272 (GRCm39) |
missense |
probably benign |
0.41 |
|
R5126:Ruvbl1
|
UTSW |
6 |
88,462,883 (GRCm39) |
missense |
probably benign |
0.13 |
|
R5296:Ruvbl1
|
UTSW |
6 |
88,462,890 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5507:Ruvbl1
|
UTSW |
6 |
88,444,582 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5559:Ruvbl1
|
UTSW |
6 |
88,450,078 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R6048:Ruvbl1
|
UTSW |
6 |
88,459,973 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R6155:Ruvbl1
|
UTSW |
6 |
88,456,107 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R6564:Ruvbl1
|
UTSW |
6 |
88,456,208 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R6704:Ruvbl1
|
UTSW |
6 |
88,456,187 (GRCm39) |
missense |
probably benign |
0.06 |
|
R7681:Ruvbl1
|
UTSW |
6 |
88,444,635 (GRCm39) |
critical splice donor site |
probably null |
|
|
R8071:Ruvbl1
|
UTSW |
6 |
88,450,108 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9087:Ruvbl1
|
UTSW |
6 |
88,474,355 (GRCm39) |
missense |
probably benign |
|
|
R9274:Ruvbl1
|
UTSW |
6 |
88,474,334 (GRCm39) |
missense |
probably benign |
|
|
R9670:Ruvbl1
|
UTSW |
6 |
88,444,558 (GRCm39) |
missense |
probably benign |
0.01 |
|
| Predicted Primers |
PCR Primer
(F):5'- ACTGAGCTCTGCCATTTGAG -3'
(R):5'- TGGTGCACTAGAATGGGAAC -3'
Sequencing Primer
(F):5'- GCTGGGCAGTGAAAACCC -3'
(R):5'- ACAAAGGAGTGCTGCGTAG -3'
|
| Posted On |
2016-12-20 |
Incidental Mutation