Mutagenetix > Incidental Mutation

Incidental Mutation 'R5698:Tfg'

450818

Institutional Source

Beutler Lab

Gene Symbol

Tfg

Ensembl Gene

ENSMUSG00000022757

Gene Name

Trk-fused gene

Synonyms

Accession Numbers

Essential gene?

Probably essential (E-score: 0.942) question?

Stock #

R5698 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

56510695-56537813 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 56521467 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 183 (M183K)

Ref Sequence

ENSEMBL: ENSMUSP00000067867 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000065515] [ENSMUST00000121554] [ENSMUST00000128551] [ENSMUST00000136394] [ENSMUST00000141404] [ENSMUST00000156522]

AlphaFold

Q9Z1A1

Predicted Effect

probably damaging
Transcript: ENSMUST00000065515
AA Change: M183K

PolyPhen 2 Score 0.975 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000067867
Gene: ENSMUSG00000022757
AA Change: M183K

Domain	Start	End	E-Value	Type
PB1	10	91	5.97e-19	SMART
coiled coil region	97	124	N/A	INTRINSIC
low complexity region	208	236	N/A	INTRINSIC
low complexity region	241	269	N/A	INTRINSIC
low complexity region	272	295	N/A	INTRINSIC
low complexity region	304	334	N/A	INTRINSIC
low complexity region	361	373	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000121554

SMART Domains

Protein: ENSMUSP00000112562
Gene: ENSMUSG00000022757

Domain	Start	End	E-Value	Type
PB1	10	91	5.97e-19	SMART
coiled coil region	97	124	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000127994
AA Change: M121K

SMART Domains

Protein: ENSMUSP00000121564
Gene: ENSMUSG00000022757
AA Change: M121K

Domain	Start	End	E-Value	Type
Blast:PB1	2	30	6e-11	BLAST
coiled coil region	35	62	N/A	INTRINSIC
low complexity region	147	175	N/A	INTRINSIC
low complexity region	180	208	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000128551

SMART Domains

Protein: ENSMUSP00000119561
Gene: ENSMUSG00000022757

Domain	Start	End	E-Value	Type
PB1	10	91	5.97e-19	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000136394

SMART Domains

Protein: ENSMUSP00000120677
Gene: ENSMUSG00000022757

Domain	Start	End	E-Value	Type
PB1	10	91	5.97e-19	SMART
coiled coil region	97	124	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000141404

SMART Domains

Protein: ENSMUSP00000117405
Gene: ENSMUSG00000022757

Domain	Start	End	E-Value	Type
PB1	10	89	3.76e-16	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000156522
AA Change: M57K

PolyPhen 2 Score 0.969 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000119884
Gene: ENSMUSG00000022757
AA Change: M57K

Domain	Start	End	E-Value	Type
low complexity region	82	139	N/A	INTRINSIC
low complexity region	142	165	N/A	INTRINSIC
low complexity region	174	202	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] There are several documented fusion oncoproteins encoded partially by this gene. This gene also participates in several oncogenic rearrangements resulting in anaplastic lymphoma and mixoid chondrosarcoma, and may play a role in the NF-kappaB pathway. Multiple transcript variants have been found for this gene. [provided by RefSeq, Sep 2010]

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930556J24Rik	A	G	11: 3,926,366 (GRCm39)	K334E	possibly damaging	Het
Ache	G	A	5: 137,288,821 (GRCm39)	V176M	probably damaging	Het
Acss3	T	C	10: 106,784,605 (GRCm39)	D539G	probably damaging	Het
Adam6b	T	A	12: 113,455,083 (GRCm39)	D633E	probably benign	Het
Aldh16a1	G	A	7: 44,803,831 (GRCm39)		probably benign	Het
Amigo2	G	A	15: 97,143,607 (GRCm39)	Q272*	probably null	Het
Aoc1l1	A	G	6: 48,953,256 (GRCm39)	T394A	possibly damaging	Het
Appbp2	A	T	11: 85,100,925 (GRCm39)	H171Q	probably damaging	Het
Arhgef18	A	G	8: 3,489,499 (GRCm39)	D277G	probably damaging	Het
Armc8	A	G	9: 99,417,873 (GRCm39)	V95A	probably benign	Het
Atp6v0a4	C	T	6: 38,027,442 (GRCm39)		probably null	Het
Atp8a1	A	T	5: 67,924,496 (GRCm39)	N289K	probably benign	Het
Cand2	C	T	6: 115,768,704 (GRCm39)	L505F	probably damaging	Het
Ccnt2	A	G	1: 127,730,965 (GRCm39)	K614R	probably benign	Het
Col25a1	A	G	3: 130,272,632 (GRCm39)		probably null	Het
Copa	T	A	1: 171,946,511 (GRCm39)	L976*	probably null	Het
Ddx39b	T	C	17: 35,470,287 (GRCm39)	V267A	probably benign	Het
Dpp4	T	A	2: 62,164,655 (GRCm39)	Q709L	probably damaging	Het
Eno4	A	G	19: 58,956,904 (GRCm39)		probably null	Het
Exoc3	A	G	13: 74,322,134 (GRCm39)	L647P	probably benign	Het
Eya4	T	C	10: 23,015,975 (GRCm39)	S308G	possibly damaging	Het
Fbxo41	T	C	6: 85,454,638 (GRCm39)	T693A	possibly damaging	Het
Fcgbp	A	G	7: 27,791,447 (GRCm39)	T903A	possibly damaging	Het
Fkbp10	G	T	11: 100,314,352 (GRCm39)	W384L	probably damaging	Het
Frem2	A	G	3: 53,559,926 (GRCm39)	I1527T	possibly damaging	Het
H13	T	A	2: 152,530,875 (GRCm39)	I220N	probably damaging	Het
Has2	T	C	15: 56,531,312 (GRCm39)	R468G	probably damaging	Het
Ighmbp2	A	G	19: 3,324,538 (GRCm39)	S243P	probably damaging	Het
Irs1	T	C	1: 82,266,455 (GRCm39)	H587R	probably benign	Het
Kcnk1	C	T	8: 126,752,144 (GRCm39)	T250M	probably damaging	Het
Kif9	T	C	9: 110,339,532 (GRCm39)	V458A	probably benign	Het
Krt14	T	C	11: 100,096,451 (GRCm39)	T208A	probably benign	Het
Mybpc3	C	A	2: 90,955,194 (GRCm39)	H349Q	possibly damaging	Het
Neurl3	T	A	1: 36,305,587 (GRCm39)	T207S	possibly damaging	Het
Nol9	T	C	4: 152,135,031 (GRCm39)	V388A	probably damaging	Het
Notch3	T	C	17: 32,376,961 (GRCm39)	N315D	probably damaging	Het
Oas1h	G	T	5: 121,009,045 (GRCm39)	A252S	probably damaging	Het
Or13c7b	C	A	4: 43,821,183 (GRCm39)	M59I	probably damaging	Het
Pcbp1	G	A	6: 86,502,134 (GRCm39)	T255M	possibly damaging	Het
Plec	A	G	15: 76,083,808 (GRCm39)	V18A	probably benign	Het
Ppp1r17	A	T	6: 56,003,529 (GRCm39)	E114V	probably damaging	Het
Scamp5	A	T	9: 57,352,716 (GRCm39)	M151K	possibly damaging	Het
Sestd1	T	C	2: 77,048,512 (GRCm39)	Y135C	possibly damaging	Het
Slc22a21	T	G	11: 53,842,175 (GRCm39)	K534N	probably benign	Het
Slc25a12	T	C	2: 71,112,917 (GRCm39)	E448G	probably damaging	Het
Slco3a1	A	G	7: 73,996,566 (GRCm39)	L280P	probably damaging	Het
Sppl2b	C	A	10: 80,701,879 (GRCm39)		probably null	Het
Srd5a2	T	C	17: 74,334,014 (GRCm39)	E135G	possibly damaging	Het
Ticrr	G	A	7: 79,328,881 (GRCm39)	M673I	probably benign	Het
Tm4sf20	T	G	1: 82,745,958 (GRCm39)	M61L	probably benign	Het
Ttll8	A	T	15: 88,823,209 (GRCm39)	S85T	possibly damaging	Het
Uggt2	G	A	14: 119,280,138 (GRCm39)	S780F	probably damaging	Het
Uroc1	T	C	6: 90,324,302 (GRCm39)	L442P	probably damaging	Het
Zfp1005	C	T	2: 150,111,394 (GRCm39)	H695Y	possibly damaging	Het
Znrf3	A	G	11: 5,239,006 (GRCm39)		probably benign	Het
Zswim2	C	A	2: 83,755,527 (GRCm39)	D125Y	possibly damaging	Het

Other mutations in Tfg

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01402:Tfg	APN	16	56,514,856 (GRCm39)	splice site	probably benign
IGL01404:Tfg	APN	16	56,514,856 (GRCm39)	splice site	probably benign
IGL01548:Tfg	APN	16	56,521,465 (GRCm39)	missense	probably damaging	1.00
trafalgar	UTSW	16	56,532,997 (GRCm39)	missense	possibly damaging	0.90
R0003:Tfg	UTSW	16	56,511,351 (GRCm39)	missense	possibly damaging	0.96
R0003:Tfg	UTSW	16	56,511,351 (GRCm39)	missense	possibly damaging	0.96
R0036:Tfg	UTSW	16	56,511,358 (GRCm39)	missense	probably benign	0.18
R1730:Tfg	UTSW	16	56,533,152 (GRCm39)	missense	probably damaging	1.00
R2025:Tfg	UTSW	16	56,525,988 (GRCm39)	missense	possibly damaging	0.65
R4629:Tfg	UTSW	16	56,533,039 (GRCm39)	missense	probably damaging	1.00
R4676:Tfg	UTSW	16	56,514,854 (GRCm39)	splice site	probably null
R4879:Tfg	UTSW	16	56,521,520 (GRCm39)	missense	probably damaging	1.00
R4916:Tfg	UTSW	16	56,514,759 (GRCm39)	splice site	probably null
R5237:Tfg	UTSW	16	56,533,071 (GRCm39)	missense	possibly damaging	0.80
R5568:Tfg	UTSW	16	56,521,450 (GRCm39)	missense	probably benign	0.14
R5887:Tfg	UTSW	16	56,514,779 (GRCm39)	nonsense	probably null
R7213:Tfg	UTSW	16	56,521,516 (GRCm39)	missense	probably benign	0.03
R7392:Tfg	UTSW	16	56,532,972 (GRCm39)	critical splice donor site	probably null
R7514:Tfg	UTSW	16	56,525,972 (GRCm39)	critical splice donor site	probably null
R7632:Tfg	UTSW	16	56,532,997 (GRCm39)	missense	possibly damaging	0.90
R8304:Tfg	UTSW	16	56,521,581 (GRCm39)	missense	possibly damaging	0.87
R9254:Tfg	UTSW	16	56,526,050 (GRCm39)	missense	probably damaging	1.00
R9432:Tfg	UTSW	16	56,524,868 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TGGGGTGCTGAAATCATGAATTTTC -3'
(R):5'- CCCTGAAGCATGAACACAGTTC -3'

Sequencing Primer
(F):5'- TGGCTGAACCCTTAAGAC -3'
(R):5'- CACAGTTCTATATTCACAAAGTCCTG -3'

Posted On

2017-01-03