Incidental Mutation 'R5716:Tmem184c'
| ID |
451180 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Tmem184c
|
| Ensembl Gene |
ENSMUSG00000031617 |
| Gene Name |
transmembrane protein 184C |
| Synonyms |
Tmem34, 8430433H16Rik |
| MMRRC Submission |
043187-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.264)
|
| Stock # |
R5716 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
8 |
| Chromosomal Location |
78322611-78337327 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 78333036 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Histidine to Arginine
at position 85
(H85R)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000114463
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000034030]
[ENSMUST00000141202]
[ENSMUST00000152168]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000034030
AA Change: H45R
PolyPhen 2
Score 0.524 (Sensitivity: 0.88; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000034030
Gene: ENSMUSG00000031617
AA Change: H45R
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
13 |
35 |
N/A |
INTRINSIC |
|
Pfam:Solute_trans_a
|
48 |
317 |
1.9e-101 |
PFAM |
|
low complexity region
|
373 |
388 |
N/A |
INTRINSIC |
|
low complexity region
|
404 |
415 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
422 |
485 |
1.18e-11 |
PROSPERO |
|
low complexity region
|
500 |
512 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
519 |
599 |
1.18e-11 |
PROSPERO |
|
low complexity region
|
600 |
621 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000139140
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000141202
AA Change: H86R
PolyPhen 2
Score 0.663 (Sensitivity: 0.86; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000120041
Gene: ENSMUSG00000031617
AA Change: H86R
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
54 |
76 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000152168
AA Change: H85R
PolyPhen 2
Score 0.901 (Sensitivity: 0.82; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000114463
Gene: ENSMUSG00000031617
AA Change: H85R
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
53 |
75 |
N/A |
INTRINSIC |
|
Pfam:Solute_trans_a
|
85 |
228 |
1.4e-49 |
PFAM |
|
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.2%
- 20x: 95.2%
|
| Validation Efficiency |
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 40 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1810065E05Rik |
T |
C |
11: 58,312,594 (GRCm39) |
V24A |
possibly damaging |
Het |
| Abca14 |
G |
A |
7: 119,846,217 (GRCm39) |
|
probably null |
Het |
| Acad12 |
A |
G |
5: 121,748,046 (GRCm39) |
V124A |
probably benign |
Het |
| Alg1 |
A |
T |
16: 5,057,820 (GRCm39) |
D238V |
probably damaging |
Het |
| Bcar3 |
A |
G |
3: 122,306,564 (GRCm39) |
E179G |
probably damaging |
Het |
| Brf2 |
A |
G |
8: 27,616,074 (GRCm39) |
S104P |
probably benign |
Het |
| Coq8a |
A |
T |
1: 180,006,825 (GRCm39) |
Y21N |
possibly damaging |
Het |
| Cramp1 |
A |
G |
17: 25,193,709 (GRCm39) |
F924L |
probably damaging |
Het |
| Dpyd |
G |
T |
3: 118,692,828 (GRCm39) |
C324F |
probably damaging |
Het |
| Eif4b |
T |
C |
15: 101,990,494 (GRCm39) |
Y33H |
probably benign |
Het |
| Fry |
C |
T |
5: 150,293,686 (GRCm39) |
Q460* |
probably null |
Het |
| Fryl |
T |
C |
5: 73,257,808 (GRCm39) |
I665V |
probably benign |
Het |
| Gpank1 |
A |
G |
17: 35,342,229 (GRCm39) |
K90E |
probably damaging |
Het |
| Hexd |
A |
G |
11: 121,112,388 (GRCm39) |
I482V |
probably benign |
Het |
| Hmcn2 |
G |
A |
2: 31,226,579 (GRCm39) |
E185K |
probably damaging |
Het |
| Hmcn2 |
A |
G |
2: 31,348,750 (GRCm39) |
E4922G |
possibly damaging |
Het |
| Ino80d |
A |
T |
1: 63,097,856 (GRCm39) |
D679E |
probably benign |
Het |
| Kalrn |
A |
T |
16: 33,807,546 (GRCm39) |
C2608S |
probably benign |
Het |
| Kars1 |
T |
A |
8: 112,730,074 (GRCm39) |
|
probably null |
Het |
| Lcn2 |
A |
G |
2: 32,275,825 (GRCm39) |
V211A |
possibly damaging |
Het |
| Lsmem1 |
A |
T |
12: 40,230,692 (GRCm39) |
V70E |
possibly damaging |
Het |
| Med12l |
T |
C |
3: 59,208,798 (GRCm39) |
|
probably null |
Het |
| Megf11 |
T |
C |
9: 64,413,392 (GRCm39) |
F60L |
possibly damaging |
Het |
| Muc21 |
A |
C |
17: 35,931,675 (GRCm39) |
|
probably benign |
Het |
| Neb |
T |
A |
2: 52,100,596 (GRCm39) |
H4438L |
probably benign |
Het |
| Nuf2 |
C |
A |
1: 169,349,958 (GRCm39) |
V107F |
probably benign |
Het |
| Or14j6 |
A |
T |
17: 38,214,719 (GRCm39) |
Y94F |
probably benign |
Het |
| Or6c8 |
T |
A |
10: 128,915,424 (GRCm39) |
N136I |
probably benign |
Het |
| Or9i2 |
C |
T |
19: 13,816,003 (GRCm39) |
C178Y |
probably damaging |
Het |
| Pabpn1l |
A |
G |
8: 123,347,160 (GRCm39) |
V215A |
probably damaging |
Het |
| Pnn |
A |
G |
12: 59,118,658 (GRCm39) |
I414V |
probably benign |
Het |
| Rab11fip3 |
A |
G |
17: 26,255,638 (GRCm39) |
Y539H |
probably damaging |
Het |
| Rassf4 |
A |
G |
6: 116,638,828 (GRCm39) |
V13A |
probably benign |
Het |
| Sephs1 |
T |
C |
2: 4,889,389 (GRCm39) |
F56L |
probably benign |
Het |
| Sh3rf3 |
C |
T |
10: 58,967,105 (GRCm39) |
P816S |
probably benign |
Het |
| Skint10 |
A |
G |
4: 112,568,844 (GRCm39) |
L291P |
probably damaging |
Het |
| Thsd7a |
T |
A |
6: 12,343,147 (GRCm39) |
I1157L |
probably benign |
Het |
| Tmem94 |
T |
C |
11: 115,683,254 (GRCm39) |
V679A |
probably benign |
Het |
| Tpcn2 |
A |
C |
7: 144,811,550 (GRCm39) |
F566V |
possibly damaging |
Het |
| Uqcrc1 |
A |
G |
9: 108,776,473 (GRCm39) |
N298D |
probably benign |
Het |
|
| Other mutations in Tmem184c |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01894:Tmem184c
|
APN |
8 |
78,323,775 (GRCm39) |
nonsense |
probably null |
|
|
IGL02024:Tmem184c
|
APN |
8 |
78,331,443 (GRCm39) |
missense |
probably benign |
0.10 |
|
IGL02231:Tmem184c
|
APN |
8 |
78,331,441 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02736:Tmem184c
|
APN |
8 |
78,324,475 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02934:Tmem184c
|
APN |
8 |
78,324,449 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03046:Tmem184c
|
UTSW |
8 |
78,326,286 (GRCm39) |
nonsense |
probably null |
|
|
R0107:Tmem184c
|
UTSW |
8 |
78,323,702 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R0107:Tmem184c
|
UTSW |
8 |
78,323,702 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R0189:Tmem184c
|
UTSW |
8 |
78,324,441 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R0564:Tmem184c
|
UTSW |
8 |
78,332,789 (GRCm39) |
splice site |
probably null |
|
|
R0946:Tmem184c
|
UTSW |
8 |
78,331,386 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1629:Tmem184c
|
UTSW |
8 |
78,332,791 (GRCm39) |
critical splice donor site |
probably null |
|
|
R1629:Tmem184c
|
UTSW |
8 |
78,329,551 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R2261:Tmem184c
|
UTSW |
8 |
78,323,804 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2261:Tmem184c
|
UTSW |
8 |
78,323,672 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2919:Tmem184c
|
UTSW |
8 |
78,331,276 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3805:Tmem184c
|
UTSW |
8 |
78,323,504 (GRCm39) |
missense |
unknown |
|
|
R5418:Tmem184c
|
UTSW |
8 |
78,324,449 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5934:Tmem184c
|
UTSW |
8 |
78,331,352 (GRCm39) |
nonsense |
probably null |
|
|
R5951:Tmem184c
|
UTSW |
8 |
78,325,291 (GRCm39) |
splice site |
probably null |
|
|
R6150:Tmem184c
|
UTSW |
8 |
78,323,069 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7206:Tmem184c
|
UTSW |
8 |
78,323,206 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R7387:Tmem184c
|
UTSW |
8 |
78,324,559 (GRCm39) |
nonsense |
probably null |
|
|
R7899:Tmem184c
|
UTSW |
8 |
78,324,440 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7959:Tmem184c
|
UTSW |
8 |
78,329,532 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R8100:Tmem184c
|
UTSW |
8 |
78,331,411 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R8246:Tmem184c
|
UTSW |
8 |
78,336,814 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9800:Tmem184c
|
UTSW |
8 |
78,323,087 (GRCm39) |
missense |
probably benign |
0.10 |
|
| Predicted Primers |
PCR Primer
(F):5'- CCACACTGTATATTGGGACCATC -3'
(R):5'- CGCACTCACACATGCATATATG -3'
Sequencing Primer
(F):5'- TATTGGGACCATCCATAGGATCC -3'
(R):5'- TATTTGGGAAATAACAAGACAG -3'
|
| Posted On |
2017-01-03 |
Incidental Mutation