Mutagenetix > Incidental Mutation

Incidental Mutation 'R5718:Thnsl1'

451258

Institutional Source

Beutler Lab

Gene Symbol

Thnsl1

Ensembl Gene

ENSMUSG00000048550

Gene Name

threonine synthase-like 1 (bacterial)

Synonyms

MMRRC Submission

043338-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.083) question?

Stock #

R5718 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

21210535-21219820 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 21216811 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 188 (H188Q)

Ref Sequence

ENSEMBL: ENSMUSP00000052452 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000054591] [ENSMUST00000102951] [ENSMUST00000102952] [ENSMUST00000138914] [ENSMUST00000138965]

AlphaFold

Q8BH55

Predicted Effect

possibly damaging
Transcript: ENSMUST00000054591
AA Change: H188Q

PolyPhen 2 Score 0.539 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000052452
Gene: ENSMUSG00000048550
AA Change: H188Q

Domain	Start	End	E-Value	Type
Pfam:AAA_17	57	202	2e-8	PFAM
Pfam:SKI	64	221	5.8e-40	PFAM
Pfam:Thr_synth_N	230	318	3.2e-16	PFAM
Pfam:PALP	326	659	2.2e-9	PFAM
low complexity region	684	701	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000102951

SMART Domains

Protein: ENSMUSP00000100016
Gene: ENSMUSG00000048550

Domain	Start	End	E-Value	Type
PDB:1KL7\|B	2	158	2e-27	PDB
SCOP:d1kl7a_	2	214	7e-20	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000102952

SMART Domains

Protein: ENSMUSP00000100017
Gene: ENSMUSG00000048550

Domain	Start	End	E-Value	Type
PDB:1KL7\|B	2	158	2e-27	PDB
SCOP:d1kl7a_	2	214	7e-20	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000138914

Predicted Effect

probably benign
Transcript: ENSMUST00000138965

SMART Domains

Protein: ENSMUSP00000115186
Gene: ENSMUSG00000048550

Domain	Start	End	E-Value	Type
PDB:1KL7\|B	2	93	5e-16	PDB

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgra2	T	C	8: 27,603,514 (GRCm39)		probably null	Het
Ahctf1	G	T	1: 179,596,904 (GRCm39)	H81N	possibly damaging	Het
Alyref2	T	C	1: 171,331,678 (GRCm39)	S152P	possibly damaging	Het
Arhgef7	C	T	8: 11,835,774 (GRCm39)	T20I	probably damaging	Het
Armc3	T	G	2: 19,308,610 (GRCm39)	Y759*	probably null	Het
Atg5	A	G	10: 44,238,983 (GRCm39)	S255G	probably benign	Het
Atp11b	A	G	3: 35,891,665 (GRCm39)	I1026V	probably benign	Het
Atp1a2	C	A	1: 172,107,009 (GRCm39)	K770N	probably damaging	Het
Bptf	G	T	11: 107,002,260 (GRCm39)	A284E	probably damaging	Het
Celsr2	A	G	3: 108,300,674 (GRCm39)	S815P	probably benign	Het
Chrna5	A	G	9: 54,905,389 (GRCm39)	H67R	probably benign	Het
Cic	A	G	7: 24,972,203 (GRCm39)	I645V	probably benign	Het
Clpx	A	T	9: 65,207,246 (GRCm39)	Q48L	probably benign	Het
Crhr2	G	A	6: 55,069,085 (GRCm39)	Q397*	probably null	Het
Cyp11a1	G	A	9: 57,925,508 (GRCm39)	V48I	probably benign	Het
Dchs1	C	T	7: 105,404,955 (GRCm39)	R2529H	probably benign	Het
Dnah7c	A	T	1: 46,787,826 (GRCm39)	H3293L	possibly damaging	Het
Dock6	G	T	9: 21,735,789 (GRCm39)	D986E	probably benign	Het
Efcab6	T	A	15: 83,788,439 (GRCm39)	N952Y	probably damaging	Het
Eml2	G	A	7: 18,935,088 (GRCm39)	V432I	probably damaging	Het
Epg5	G	A	18: 78,029,618 (GRCm39)	C1327Y	probably damaging	Het
Fbxw18	T	C	9: 109,520,636 (GRCm39)	E241G	probably benign	Het
Fsd1	T	G	17: 56,297,542 (GRCm39)		probably benign	Het
Gcnt3	A	G	9: 69,941,552 (GRCm39)	S339P	probably benign	Het
Gldc	T	A	19: 30,088,172 (GRCm39)	K829*	probably null	Het
Gli3	G	A	13: 15,652,750 (GRCm39)		probably null	Het
Gm11595	G	A	11: 99,663,381 (GRCm39)	R100C	unknown	Het
Greb1l	G	A	18: 10,542,427 (GRCm39)	E1341K	probably damaging	Het
Hmcn1	A	T	1: 150,566,351 (GRCm39)	C2217*	probably null	Het
Hmcn1	A	T	1: 150,485,417 (GRCm39)	I4395N	probably damaging	Het
Hmgxb3	A	G	18: 61,273,909 (GRCm39)	M861T	probably benign	Het
Ift172	A	G	5: 31,412,621 (GRCm39)	S1545P	possibly damaging	Het
Jak3	C	A	8: 72,136,998 (GRCm39)	L725M	probably damaging	Het
Lrig2	A	T	3: 104,375,931 (GRCm39)	C90*	probably null	Het
Mcm7	C	T	5: 138,163,081 (GRCm39)	R357H	possibly damaging	Het
Mcoln2	T	C	3: 145,887,581 (GRCm39)	S333P	probably damaging	Het
Mrpl22	A	T	11: 58,068,109 (GRCm39)	I136L	probably benign	Het
Ncam2	A	T	16: 81,386,702 (GRCm39)		probably null	Het
Ncdn	G	A	4: 126,643,743 (GRCm39)	Q360*	probably null	Het
Nsun2	A	G	13: 69,771,403 (GRCm39)	K338E	probably benign	Het
Obscn	T	C	11: 58,927,634 (GRCm39)	T6105A	probably damaging	Het
Or2aj6	G	A	16: 19,443,139 (GRCm39)	S237F	probably benign	Het
Or8g36	A	T	9: 39,422,338 (GRCm39)	L226H	probably damaging	Het
Pcnx4	T	A	12: 72,613,968 (GRCm39)	F638I	possibly damaging	Het
Pfn3	T	C	13: 55,562,853 (GRCm39)	I43V	probably benign	Het
Pigm	C	A	1: 172,205,012 (GRCm39)		probably null	Het
Pkhd1l1	T	A	15: 44,408,813 (GRCm39)	S2433R	probably damaging	Het
Pomt1	C	A	2: 32,138,704 (GRCm39)	A440D	possibly damaging	Het
Ptprj	T	C	2: 90,288,613 (GRCm39)	D691G	probably benign	Het
Qrich1	T	A	9: 108,406,022 (GRCm39)	S72T	probably damaging	Het
Ralgapa2	T	A	2: 146,295,326 (GRCm39)		probably null	Het
Rarg	A	C	15: 102,149,502 (GRCm39)	S156A	probably damaging	Het
Rasl11a	A	G	5: 146,783,954 (GRCm39)	K133R	probably benign	Het
Rcor1	A	G	12: 111,068,069 (GRCm39)	D158G	probably benign	Het
Rpn2	C	T	2: 157,163,747 (GRCm39)	T613M	probably damaging	Het
Sipa1l2	T	A	8: 126,217,987 (GRCm39)	H450L	probably damaging	Het
Slc25a21	T	C	12: 56,764,941 (GRCm39)	I263V	probably benign	Het
Slc25a32	A	T	15: 38,960,957 (GRCm39)	V242E	probably benign	Het
Slc5a5	T	A	8: 71,340,399 (GRCm39)	T484S	probably benign	Het
Tdrd3	T	C	14: 87,743,876 (GRCm39)	V608A	probably benign	Het
Tshz1	A	T	18: 84,032,649 (GRCm39)	H586Q	probably damaging	Het
Vmn2r27	C	T	6: 124,169,103 (GRCm39)	A676T	possibly damaging	Het
Wasf1	G	A	10: 40,802,570 (GRCm39)	R75Q	probably damaging	Het
Xbp1	T	A	11: 5,471,903 (GRCm39)	F10I	probably benign	Het
Zbtb1	G	A	12: 76,433,698 (GRCm39)	M561I	probably benign	Het
Zfp708	T	C	13: 67,218,522 (GRCm39)	K446E	probably benign	Het

Other mutations in Thnsl1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00160:Thnsl1	APN	2	21,217,260 (GRCm39)	missense	possibly damaging	0.47
IGL00756:Thnsl1	APN	2	21,217,423 (GRCm39)	missense	probably benign	0.02
IGL00952:Thnsl1	APN	2	21,216,767 (GRCm39)	missense	possibly damaging	0.89
IGL01020:Thnsl1	APN	2	21,217,305 (GRCm39)	missense	probably damaging	0.99
IGL01350:Thnsl1	APN	2	21,217,011 (GRCm39)	missense	probably benign	0.30
IGL01476:Thnsl1	APN	2	21,216,970 (GRCm39)	missense	probably benign	0.00
IGL01548:Thnsl1	APN	2	21,217,943 (GRCm39)	missense	probably damaging	1.00
IGL01916:Thnsl1	APN	2	21,217,476 (GRCm39)	missense	possibly damaging	0.66
IGL02176:Thnsl1	APN	2	21,216,665 (GRCm39)	missense	possibly damaging	0.69
IGL03001:Thnsl1	APN	2	21,216,455 (GRCm39)	missense	probably damaging	0.99
IGL03219:Thnsl1	APN	2	21,217,217 (GRCm39)	missense	probably benign	0.14
IGL03386:Thnsl1	APN	2	21,216,359 (GRCm39)	missense	probably benign	0.01
R0684:Thnsl1	UTSW	2	21,216,477 (GRCm39)	missense	probably benign	0.02
R0738:Thnsl1	UTSW	2	21,218,173 (GRCm39)	missense	probably damaging	1.00
R1119:Thnsl1	UTSW	2	21,217,857 (GRCm39)	missense	probably damaging	1.00
R1121:Thnsl1	UTSW	2	21,216,975 (GRCm39)	missense	probably benign	0.00
R2150:Thnsl1	UTSW	2	21,217,344 (GRCm39)	missense	probably benign	0.08
R3545:Thnsl1	UTSW	2	21,217,438 (GRCm39)	missense	probably benign	0.01
R3547:Thnsl1	UTSW	2	21,217,438 (GRCm39)	missense	probably benign	0.01
R4244:Thnsl1	UTSW	2	21,217,059 (GRCm39)	missense	probably benign
R4245:Thnsl1	UTSW	2	21,217,059 (GRCm39)	missense	probably benign
R4510:Thnsl1	UTSW	2	21,217,236 (GRCm39)	missense	probably damaging	0.99
R4511:Thnsl1	UTSW	2	21,217,236 (GRCm39)	missense	probably damaging	0.99
R4678:Thnsl1	UTSW	2	21,216,352 (GRCm39)	splice site	probably null
R4753:Thnsl1	UTSW	2	21,218,175 (GRCm39)	missense	probably damaging	1.00
R4795:Thnsl1	UTSW	2	21,216,856 (GRCm39)	nonsense	probably null
R4796:Thnsl1	UTSW	2	21,216,856 (GRCm39)	nonsense	probably null
R5584:Thnsl1	UTSW	2	21,218,223 (GRCm39)	missense	probably damaging	1.00
R5586:Thnsl1	UTSW	2	21,217,201 (GRCm39)	nonsense	probably null
R5682:Thnsl1	UTSW	2	21,216,879 (GRCm39)	missense	possibly damaging	0.69
R6159:Thnsl1	UTSW	2	21,217,016 (GRCm39)	nonsense	probably null
R6795:Thnsl1	UTSW	2	21,218,303 (GRCm39)	nonsense	probably null
R7084:Thnsl1	UTSW	2	21,217,141 (GRCm39)	missense	possibly damaging	0.69
R7153:Thnsl1	UTSW	2	21,217,764 (GRCm39)	missense	possibly damaging	0.64
R7243:Thnsl1	UTSW	2	21,217,658 (GRCm39)	missense	probably damaging	1.00
R7265:Thnsl1	UTSW	2	21,217,269 (GRCm39)	missense	probably damaging	1.00
R7481:Thnsl1	UTSW	2	21,216,599 (GRCm39)	missense	probably benign	0.00
R8005:Thnsl1	UTSW	2	21,216,755 (GRCm39)	missense	probably benign
R8223:Thnsl1	UTSW	2	21,216,924 (GRCm39)	missense	probably benign	0.45
R8331:Thnsl1	UTSW	2	21,216,985 (GRCm39)	missense	probably benign
R8548:Thnsl1	UTSW	2	21,217,733 (GRCm39)	missense	possibly damaging	0.75
R8798:Thnsl1	UTSW	2	21,217,209 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- AGTGTGATTTCCCTCAGTGG -3'
(R):5'- TTCTCAGGAACAAAGAGGCCAC -3'

Sequencing Primer
(F):5'- GGTCCAATCCCATGCATGATG -3'
(R):5'- CTTCACTGAAGTATTTTGGTGGAAAC -3'

Posted On

2017-01-03