Incidental Mutation 'IGL03098:Rnf10'
| ID |
452971 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Rnf10
|
| Ensembl Gene |
ENSMUSG00000041740 |
| Gene Name |
ring finger protein 10 |
| Synonyms |
|
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.628)
|
| Stock # |
IGL03098 (G1)
|
| Quality Score |
71 |
|
Status
|
Validated
|
| Chromosome |
5 |
| Chromosomal Location |
115379829-115410980 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 115410426 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Glycine
at position 16
(D16G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000107726
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000040555]
[ENSMUST00000112096]
[ENSMUST00000112097]
|
| AlphaFold |
Q3UIW5 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000040555
AA Change: D16G
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000041778
Gene: ENSMUSG00000041740
AA Change: D16G
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
13 |
N/A |
INTRINSIC |
|
low complexity region
|
18 |
31 |
N/A |
INTRINSIC |
|
low complexity region
|
78 |
90 |
N/A |
INTRINSIC |
|
low complexity region
|
100 |
114 |
N/A |
INTRINSIC |
|
low complexity region
|
152 |
166 |
N/A |
INTRINSIC |
|
RING
|
225 |
266 |
1.98e-8 |
SMART |
|
low complexity region
|
379 |
400 |
N/A |
INTRINSIC |
|
low complexity region
|
439 |
461 |
N/A |
INTRINSIC |
|
low complexity region
|
591 |
618 |
N/A |
INTRINSIC |
|
low complexity region
|
660 |
671 |
N/A |
INTRINSIC |
|
low complexity region
|
781 |
792 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000112096
AA Change: D16G
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000107725
Gene: ENSMUSG00000041740
AA Change: D16G
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
13 |
N/A |
INTRINSIC |
|
low complexity region
|
18 |
31 |
N/A |
INTRINSIC |
|
low complexity region
|
78 |
90 |
N/A |
INTRINSIC |
|
low complexity region
|
100 |
114 |
N/A |
INTRINSIC |
|
low complexity region
|
152 |
166 |
N/A |
INTRINSIC |
|
RING
|
225 |
266 |
1.98e-8 |
SMART |
|
low complexity region
|
379 |
400 |
N/A |
INTRINSIC |
|
low complexity region
|
439 |
461 |
N/A |
INTRINSIC |
|
low complexity region
|
591 |
618 |
N/A |
INTRINSIC |
|
low complexity region
|
660 |
671 |
N/A |
INTRINSIC |
|
low complexity region
|
782 |
793 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000112097
AA Change: D16G
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000107726
Gene: ENSMUSG00000041740
AA Change: D16G
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
4 |
13 |
N/A |
INTRINSIC |
|
low complexity region
|
18 |
31 |
N/A |
INTRINSIC |
|
low complexity region
|
78 |
90 |
N/A |
INTRINSIC |
|
low complexity region
|
100 |
114 |
N/A |
INTRINSIC |
|
low complexity region
|
152 |
166 |
N/A |
INTRINSIC |
|
RING
|
225 |
266 |
1.98e-8 |
SMART |
|
low complexity region
|
379 |
400 |
N/A |
INTRINSIC |
|
low complexity region
|
440 |
462 |
N/A |
INTRINSIC |
|
low complexity region
|
592 |
619 |
N/A |
INTRINSIC |
|
low complexity region
|
661 |
672 |
N/A |
INTRINSIC |
|
low complexity region
|
783 |
794 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000139853
|
| SMART Domains |
Protein: ENSMUSP00000131696
Gene: ENSMUSG00000041740
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
41 |
53 |
N/A |
INTRINSIC |
|
low complexity region
|
63 |
77 |
N/A |
INTRINSIC |
|
low complexity region
|
115 |
129 |
N/A |
INTRINSIC |
|
RING
|
188 |
229 |
1.98e-8 |
SMART |
|
low complexity region
|
342 |
363 |
N/A |
INTRINSIC |
|
low complexity region
|
402 |
424 |
N/A |
INTRINSIC |
|
low complexity region
|
554 |
581 |
N/A |
INTRINSIC |
|
low complexity region
|
623 |
634 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000200923
|
| Meta Mutation Damage Score |
0.0777 |
| Coding Region Coverage |
- 1x: 0.0%
- 3x: 0.0%
- 10x: 0.0%
- 20x: 0.0%
|
| Validation Efficiency |
92% (44/48) |
| MGI Phenotype |
FUNCTION: The protein encoding this gene is a member of the really interesting new gene finger protein family. Members of this family contain protein motifs similar to zinc finger domains and are involved in many processes that include transcriptional regulation, DNA repair and signal transduction. Expression of this gene is upregulated during neuronal differentiation of cultured cells, and inhibition of its expression impairs differentiation and cell cycle exit, providing evidence for a function in neuronal differentiation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2014]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 42 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4933416I08Rik |
TCC |
TCCC |
X: 52,692,862 (GRCm39) |
|
noncoding transcript |
Het |
| Abca15 |
T |
C |
7: 119,987,499 (GRCm39) |
|
probably null |
Het |
| Adcy4 |
T |
C |
14: 56,019,038 (GRCm39) |
Q173R |
probably null |
Het |
| Arhgef19 |
A |
G |
4: 140,974,879 (GRCm39) |
D113G |
possibly damaging |
Het |
| Btbd6 |
A |
G |
12: 112,942,038 (GRCm39) |
E501G |
probably damaging |
Het |
| Btnl2 |
T |
C |
17: 34,584,190 (GRCm39) |
V371A |
probably benign |
Het |
| Cd84 |
G |
T |
1: 171,700,267 (GRCm39) |
R128L |
possibly damaging |
Het |
| Cilp |
TGGG |
TGG |
9: 65,187,412 (GRCm39) |
|
probably null |
Het |
| Crb1 |
CG |
C |
1: 139,164,824 (GRCm39) |
|
probably null |
Het |
| Dsg3 |
A |
T |
18: 20,643,422 (GRCm39) |
|
probably benign |
Het |
| Efnb2 |
A |
T |
8: 8,713,420 (GRCm39) |
|
probably benign |
Het |
| Fam24b |
T |
C |
7: 130,927,977 (GRCm39) |
S71G |
probably benign |
Het |
| Flacc1 |
G |
T |
1: 58,730,908 (GRCm39) |
H49Q |
probably benign |
Het |
| Hgd |
G |
A |
16: 37,436,607 (GRCm39) |
C180Y |
probably benign |
Het |
| Hjurp |
TGGG |
TTGCGGG |
1: 88,194,002 (GRCm39) |
|
probably benign |
Het |
| Hsd17b7 |
C |
T |
1: 169,780,649 (GRCm39) |
E320K |
probably damaging |
Het |
| Kcmf1 |
A |
T |
6: 72,826,567 (GRCm39) |
M1K |
probably null |
Het |
| Letm2 |
T |
A |
8: 26,071,745 (GRCm39) |
T386S |
possibly damaging |
Het |
| Lvrn |
A |
T |
18: 47,014,477 (GRCm39) |
|
probably null |
Het |
| Mmp1a |
TG |
TGG |
9: 7,465,083 (GRCm38) |
|
probably null |
Het |
| Nid2 |
G |
A |
14: 19,856,006 (GRCm39) |
D1244N |
probably damaging |
Het |
| Nvl |
G |
T |
1: 180,921,471 (GRCm39) |
Q843K |
probably benign |
Het |
| Obi1 |
T |
C |
14: 104,716,253 (GRCm39) |
I707V |
possibly damaging |
Het |
| Or1e30 |
T |
G |
11: 73,678,529 (GRCm39) |
I255S |
probably benign |
Het |
| Pi4ka |
A |
T |
16: 17,143,891 (GRCm39) |
I726N |
probably damaging |
Het |
| Rab25 |
A |
T |
3: 88,449,567 (GRCm39) |
C209S |
probably damaging |
Het |
| Rgs6 |
A |
T |
12: 83,032,150 (GRCm39) |
I21F |
probably damaging |
Het |
| Rnmt |
G |
A |
18: 68,439,073 (GRCm39) |
V61M |
probably damaging |
Het |
| Rrs1 |
GCTC |
GC |
1: 9,616,328 (GRCm39) |
|
probably null |
Het |
| Scd4 |
A |
T |
19: 44,321,931 (GRCm39) |
M1L |
possibly damaging |
Het |
| Speer4c1 |
A |
C |
5: 15,919,214 (GRCm39) |
|
probably benign |
Het |
| Sptb |
A |
G |
12: 76,668,273 (GRCm39) |
I608T |
probably damaging |
Het |
| Sstr5 |
A |
G |
17: 25,710,251 (GRCm39) |
V326A |
probably benign |
Het |
| Sugct |
T |
C |
13: 17,846,321 (GRCm39) |
D62G |
probably damaging |
Het |
| Thada |
C |
G |
17: 84,641,569 (GRCm39) |
D1306H |
possibly damaging |
Het |
| Thap1 |
C |
G |
8: 26,652,498 (GRCm39) |
P79A |
probably benign |
Het |
| Tra2a |
G |
A |
6: 49,225,969 (GRCm39) |
S157L |
probably damaging |
Het |
| Trappc10 |
C |
T |
10: 78,050,520 (GRCm39) |
R307Q |
probably damaging |
Het |
| Trim9 |
A |
G |
12: 70,327,467 (GRCm39) |
I390T |
possibly damaging |
Het |
| Usp24 |
T |
C |
4: 106,228,230 (GRCm39) |
V765A |
probably benign |
Het |
| Wdr90 |
C |
A |
17: 26,078,961 (GRCm39) |
|
probably benign |
Het |
| Ybey |
A |
T |
10: 76,304,078 (GRCm39) |
C41* |
probably null |
Het |
|
| Other mutations in Rnf10 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01014:Rnf10
|
APN |
5 |
115,395,042 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01995:Rnf10
|
APN |
5 |
115,389,161 (GRCm39) |
nonsense |
probably null |
|
|
IGL02291:Rnf10
|
APN |
5 |
115,398,255 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02751:Rnf10
|
APN |
5 |
115,380,725 (GRCm39) |
missense |
probably benign |
0.20 |
|
IGL02897:Rnf10
|
APN |
5 |
115,386,700 (GRCm39) |
missense |
probably benign |
|
|
IGL02968:Rnf10
|
APN |
5 |
115,383,947 (GRCm39) |
missense |
probably benign |
0.05 |
|
IGL03008:Rnf10
|
APN |
5 |
115,389,355 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R0409:Rnf10
|
UTSW |
5 |
115,393,506 (GRCm39) |
splice site |
probably benign |
|
|
R1083:Rnf10
|
UTSW |
5 |
115,398,163 (GRCm39) |
splice site |
probably benign |
|
|
R1754:Rnf10
|
UTSW |
5 |
115,383,924 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1957:Rnf10
|
UTSW |
5 |
115,398,381 (GRCm39) |
splice site |
probably benign |
|
|
R2398:Rnf10
|
UTSW |
5 |
115,385,332 (GRCm39) |
missense |
probably benign |
0.33 |
|
R2848:Rnf10
|
UTSW |
5 |
115,387,171 (GRCm39) |
missense |
probably benign |
|
|
R2849:Rnf10
|
UTSW |
5 |
115,387,171 (GRCm39) |
missense |
probably benign |
|
|
R4527:Rnf10
|
UTSW |
5 |
115,398,210 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R4617:Rnf10
|
UTSW |
5 |
115,386,762 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4673:Rnf10
|
UTSW |
5 |
115,389,148 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4823:Rnf10
|
UTSW |
5 |
115,393,501 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R5560:Rnf10
|
UTSW |
5 |
115,388,057 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5805:Rnf10
|
UTSW |
5 |
115,382,127 (GRCm39) |
missense |
probably benign |
|
|
R6192:Rnf10
|
UTSW |
5 |
115,395,136 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7061:Rnf10
|
UTSW |
5 |
115,395,149 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7206:Rnf10
|
UTSW |
5 |
115,382,180 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7213:Rnf10
|
UTSW |
5 |
115,380,533 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7213:Rnf10
|
UTSW |
5 |
115,380,532 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7429:Rnf10
|
UTSW |
5 |
115,386,739 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8098:Rnf10
|
UTSW |
5 |
115,389,438 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8179:Rnf10
|
UTSW |
5 |
115,398,176 (GRCm39) |
frame shift |
probably null |
|
|
R8252:Rnf10
|
UTSW |
5 |
115,398,373 (GRCm39) |
missense |
probably benign |
0.03 |
|
R8357:Rnf10
|
UTSW |
5 |
115,410,320 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
R8457:Rnf10
|
UTSW |
5 |
115,410,320 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
R9160:Rnf10
|
UTSW |
5 |
115,398,249 (GRCm39) |
missense |
probably benign |
0.06 |
|
R9274:Rnf10
|
UTSW |
5 |
115,385,322 (GRCm39) |
nonsense |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- TGCAAGGGCCCAAATTAACC -3'
(R):5'- CCTTCCATTTTGAGAAGCTGAGG -3'
Sequencing Primer
(F):5'- AGCGCAGATCGGCTTAAC -3'
(R):5'- CATTTTGAGAAGCTGAGGAAGGAAAC -3'
|
| Posted On |
2017-01-24 |
Incidental Mutation