Mutagenetix > Incidental Mutation

Incidental Mutation 'R5846:Adgra1'

453623

Institutional Source

Beutler Lab

Gene Symbol

Adgra1

Ensembl Gene

ENSMUSG00000025475

Gene Name

adhesion G protein-coupled receptor A1

Synonyms

D7Ertd680e, Gpr123, 2900059M17Rik

MMRRC Submission

044064-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.143) question?

Stock #

R5846 (G1)

Quality Score

210

Status

Validated

Chromosome

Chromosomal Location

139414090-139458004 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 139455196 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 275 (W275R)

Ref Sequence

ENSEMBL: ENSMUSP00000026548 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026548]

AlphaFold

Q8C4G9

Predicted Effect

probably damaging
Transcript: ENSMUST00000026548
AA Change: W275R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000026548
Gene: ENSMUSG00000025475
AA Change: W275R

Domain	Start	End	E-Value	Type
Pfam:7tm_2	19	307	1.4e-16	PFAM
low complexity region	407	419	N/A	INTRINSIC
low complexity region	423	434	N/A	INTRINSIC
low complexity region	469	481	N/A	INTRINSIC

Meta Mutation Damage Score

0.8963

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.8%
20x: 93.4%

Validation Efficiency

97% (67/69)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that belongs to the adhesion family of G-protein-coupled receptors. Members of this family function in several sensory systems and regulate blood pressure, immune responses, food intake and development. A similar protein in rodents is thought to play a role in in the regulation of neuronal signaling pathways. Several alternatively spliced transcript variants of this gene have been described, but the full-length nature of some of these variants has not been determined. [provided by RefSeq, Mar 2014]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4932414N04Rik	T	C	2: 68,562,377 (GRCm39)	S335P	unknown	Het
Ace3	A	T	11: 105,889,188 (GRCm39)	I473F	probably benign	Het
Adcy2	T	A	13: 68,886,707 (GRCm39)	N281Y	probably damaging	Het
Apmap	T	C	2: 150,450,341 (GRCm39)	D20G	probably damaging	Het
Arap2	T	C	5: 62,807,116 (GRCm39)	T1184A	probably damaging	Het
Atp13a2	T	C	4: 140,722,907 (GRCm39)	V303A	possibly damaging	Het
BC004004	A	T	17: 29,501,282 (GRCm39)		probably benign	Het
C1s1	G	A	6: 124,517,912 (GRCm39)	P23S	possibly damaging	Het
C1s2	T	A	6: 124,608,123 (GRCm39)	N197Y	probably damaging	Het
Camsap3	A	G	8: 3,653,980 (GRCm39)	H539R	probably damaging	Het
Catsperb	A	T	12: 101,569,025 (GRCm39)	N899I	probably damaging	Het
Cct4	T	C	11: 22,951,354 (GRCm39)		probably benign	Het
Chrm2	A	T	6: 36,500,385 (GRCm39)	T81S	probably damaging	Het
Dnaaf3	A	T	7: 4,526,686 (GRCm39)	S464T	possibly damaging	Het
Dnah10	T	A	5: 124,900,437 (GRCm39)	I3898N	possibly damaging	Het
Dnah3	TTCCTC	TTC	7: 119,550,244 (GRCm39)		probably benign	Het
Dnajc13	T	C	9: 104,067,584 (GRCm39)	K1187E	probably damaging	Het
Dock4	A	T	12: 40,867,735 (GRCm39)	D1437V	probably damaging	Het
Dst	C	T	1: 34,234,942 (GRCm39)	Q3674*	probably null	Het
Eef1a2	T	C	2: 180,794,776 (GRCm39)	Y141C	probably damaging	Het
Fads3	G	T	19: 10,030,397 (GRCm39)	Q178H	probably null	Het
Fbxw22	T	A	9: 109,215,829 (GRCm39)	M140L	probably benign	Het
Fndc7	A	G	3: 108,788,707 (GRCm39)	I178T	probably damaging	Het
Foxd1	T	C	13: 98,491,549 (GRCm39)	M141T	probably damaging	Het
H4c2	T	C	13: 23,941,215 (GRCm39)	V71A	possibly damaging	Het
Havcr2	T	C	11: 46,360,343 (GRCm39)	I141T	probably benign	Het
Hectd1	A	C	12: 51,820,618 (GRCm39)	N1190K	probably damaging	Het
Hook3	T	A	8: 26,534,355 (GRCm39)		probably benign	Het
Hpgd	T	A	8: 56,760,702 (GRCm39)	I133N	possibly damaging	Het
Itih2	T	C	2: 10,102,714 (GRCm39)	R807G	probably benign	Het
Klhl35	G	A	7: 99,122,094 (GRCm39)	G65D	probably damaging	Het
Lrch4	C	G	5: 137,631,919 (GRCm39)	C48W	probably damaging	Het
Mafa	A	G	15: 75,619,627 (GRCm39)	S49P	probably benign	Het
Magi1	A	G	6: 93,662,584 (GRCm39)	V1170A	probably damaging	Het
Mprip	A	T	11: 59,649,380 (GRCm39)	K1028M	probably damaging	Het
Mtpn	C	T	6: 35,489,225 (GRCm39)	D100N	probably benign	Het
Numb	G	T	12: 83,923,521 (GRCm39)		probably benign	Het
Obscn	A	G	11: 58,929,435 (GRCm39)	L6063P	probably damaging	Het
Or2y6	A	G	11: 52,103,881 (GRCm39)	*312Q	probably null	Het
Or6c6c	A	T	10: 129,540,756 (GRCm39)	N3I	probably damaging	Het
P3h3	A	T	6: 124,834,157 (GRCm39)		probably null	Het
Pi4k2a	A	G	19: 42,103,477 (GRCm39)	D329G	probably benign	Het
Ptch1	T	C	13: 63,713,268 (GRCm39)		probably benign	Het
Samd9l	A	G	6: 3,376,754 (GRCm39)	V169A	probably benign	Het
Sdk1	T	C	5: 142,100,148 (GRCm39)	Y1393H	probably damaging	Het
Slc18a3	T	A	14: 32,185,880 (GRCm39)	M168L	probably benign	Het
Smurf1	T	C	5: 144,816,190 (GRCm39)	T722A	probably damaging	Het
Ssr2	C	T	3: 88,488,379 (GRCm39)	P85L	probably damaging	Het
Syne2	G	T	12: 76,074,898 (GRCm39)	A4614S	probably benign	Het
Tgfbr3	C	A	5: 107,288,521 (GRCm39)	G380V	possibly damaging	Het
Tk1	G	T	11: 117,706,748 (GRCm39)		probably benign	Het
Tmem245	A	T	4: 56,903,241 (GRCm39)	S610T	probably benign	Het
Tmtc2	A	G	10: 105,107,302 (GRCm39)		probably benign	Het
Trim30b	A	G	7: 104,006,578 (GRCm39)	Y93H	possibly damaging	Het
Tsks	A	G	7: 44,593,412 (GRCm39)	D126G	probably damaging	Het
Ttn	T	A	2: 76,733,812 (GRCm39)		probably benign	Het
Usp15	A	G	10: 123,017,647 (GRCm39)	W50R	probably damaging	Het
Vmn2r55	A	T	7: 12,404,492 (GRCm39)	F304I	probably benign	Het
Xirp2	T	A	2: 67,339,587 (GRCm39)	D609E	probably damaging	Het
Zan	C	T	5: 137,392,638 (GRCm39)		probably null	Het

Other mutations in Adgra1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00484:Adgra1	APN	7	139,455,860 (GRCm39)	missense	probably benign	0.01
IGL01014:Adgra1	APN	7	139,455,577 (GRCm39)	missense	probably damaging	1.00
IGL01014:Adgra1	APN	7	139,455,576 (GRCm39)	missense	probably benign	0.05
IGL01068:Adgra1	APN	7	139,425,541 (GRCm39)	missense	probably damaging	0.96
IGL01095:Adgra1	APN	7	139,425,570 (GRCm39)	missense	possibly damaging	0.79
IGL02717:Adgra1	APN	7	139,456,094 (GRCm39)	missense	probably damaging	0.98
adaga	UTSW	7	139,455,196 (GRCm39)	missense	probably damaging	1.00
I2288:Adgra1	UTSW	7	139,432,495 (GRCm39)	missense	probably damaging	0.98
R0630:Adgra1	UTSW	7	139,432,500 (GRCm39)	nonsense	probably null
R0653:Adgra1	UTSW	7	139,456,063 (GRCm39)	missense	probably damaging	0.98
R1388:Adgra1	UTSW	7	139,453,919 (GRCm39)	missense	probably damaging	0.97
R1462:Adgra1	UTSW	7	139,455,745 (GRCm39)	missense	probably damaging	1.00
R1462:Adgra1	UTSW	7	139,455,745 (GRCm39)	missense	probably damaging	1.00
R1667:Adgra1	UTSW	7	139,425,564 (GRCm39)	missense	possibly damaging	0.95
R1770:Adgra1	UTSW	7	139,453,947 (GRCm39)	nonsense	probably null
R2083:Adgra1	UTSW	7	139,455,547 (GRCm39)	missense	probably damaging	0.99
R2967:Adgra1	UTSW	7	139,455,601 (GRCm39)	missense	possibly damaging	0.68
R3410:Adgra1	UTSW	7	139,427,619 (GRCm39)	missense	possibly damaging	0.94
R3411:Adgra1	UTSW	7	139,427,619 (GRCm39)	missense	possibly damaging	0.94
R3687:Adgra1	UTSW	7	139,432,506 (GRCm39)	missense	probably damaging	1.00
R3804:Adgra1	UTSW	7	139,425,510 (GRCm39)	missense	probably benign	0.01
R3912:Adgra1	UTSW	7	139,425,630 (GRCm39)	critical splice donor site	probably null
R4452:Adgra1	UTSW	7	139,432,437 (GRCm39)	missense	probably benign	0.02
R4466:Adgra1	UTSW	7	139,420,752 (GRCm39)	intron	probably benign
R4469:Adgra1	UTSW	7	139,455,977 (GRCm39)	missense	probably damaging	0.96
R4675:Adgra1	UTSW	7	139,456,102 (GRCm39)	missense	probably damaging	1.00
R4724:Adgra1	UTSW	7	139,455,505 (GRCm39)	missense	probably benign
R5220:Adgra1	UTSW	7	139,455,512 (GRCm39)	missense	probably benign	0.06
R5972:Adgra1	UTSW	7	139,425,583 (GRCm39)	missense	probably damaging	1.00
R6453:Adgra1	UTSW	7	139,455,343 (GRCm39)	missense	probably benign	0.09
R7242:Adgra1	UTSW	7	139,427,573 (GRCm39)	critical splice acceptor site	probably null
R7343:Adgra1	UTSW	7	139,456,058 (GRCm39)	missense	probably damaging	1.00
R7774:Adgra1	UTSW	7	139,427,628 (GRCm39)	missense	possibly damaging	0.79
R8190:Adgra1	UTSW	7	139,456,034 (GRCm39)	missense	probably benign
R8355:Adgra1	UTSW	7	139,455,567 (GRCm39)	nonsense	probably null
R8455:Adgra1	UTSW	7	139,455,567 (GRCm39)	nonsense	probably null
R8905:Adgra1	UTSW	7	139,455,763 (GRCm39)	missense	probably damaging	1.00
R9045:Adgra1	UTSW	7	139,432,566 (GRCm39)	missense	possibly damaging	0.64
R9056:Adgra1	UTSW	7	139,432,492 (GRCm39)	missense	probably damaging	1.00
R9183:Adgra1	UTSW	7	139,455,716 (GRCm39)	missense	probably benign	0.24
R9438:Adgra1	UTSW	7	139,432,525 (GRCm39)	missense	probably benign	0.00
V1662:Adgra1	UTSW	7	139,432,495 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TGGTCACCTGCGTGTACTTC -3'
(R):5'- AAAACCTCTGAGTTTCCCAGG -3'

Sequencing Primer
(F):5'- CGCAGGTATGAGCTCAGAG -3'
(R):5'- CTCTGAGTTTCCCAGGGCATG -3'

Posted On

2017-02-10