Incidental Mutation 'R5867:Vmn2r1'
ID 454211
Institutional Source Beutler Lab
Gene Symbol Vmn2r1
Ensembl Gene ENSMUSG00000027824
Gene Name vomeronasal 2, receptor 1
Synonyms V2r83, EG56544
MMRRC Submission 043233-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.133) question?
Stock # R5867 (G1)
Quality Score 225
Status Not validated
Chromosome 3
Chromosomal Location 63988968-64016905 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 64011990 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamic Acid to Glycine at position 617 (E617G)
Ref Sequence ENSEMBL: ENSMUSP00000029406 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000029406]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000029406
AA Change: E617G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000029406
Gene: ENSMUSG00000027824
AA Change: E617G

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Pfam:ANF_receptor 86 504 6e-92 PFAM
Pfam:NCD3G 546 599 2.4e-17 PFAM
Pfam:7tm_3 632 866 4.1e-48 PFAM
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.5%
  • 10x: 97.3%
  • 20x: 91.3%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 44 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Ahnak T C 19: 8,987,416 (GRCm39) V2900A probably damaging Het
Akip1 A G 7: 109,306,684 (GRCm39) H127R probably benign Het
Alad A T 4: 62,431,203 (GRCm39) Y56N probably damaging Het
Aldoart1 T A 4: 72,770,770 (GRCm39) M13L probably benign Het
Ap1g1 C T 8: 110,545,614 (GRCm39) A89V probably damaging Het
Ascc3 C T 10: 50,718,279 (GRCm39) R1991* probably null Het
Cd209b T C 8: 3,974,246 (GRCm39) I89V possibly damaging Het
Cd36 T C 5: 17,990,733 (GRCm39) K469R probably benign Het
Cdh20 T A 1: 109,976,581 (GRCm39) I82N probably damaging Het
Clmn G T 12: 104,748,014 (GRCm39) P511H probably damaging Het
Cyfip1 A C 7: 55,576,061 (GRCm39) D1077A probably damaging Het
Cyp2a5 T C 7: 26,542,383 (GRCm39) F462L probably benign Het
Dclk2 A G 3: 86,699,166 (GRCm39) *709Q probably null Het
Drd1 T C 13: 54,208,182 (GRCm39) T4A probably benign Het
Ephb2 C T 4: 136,402,733 (GRCm39) V513I possibly damaging Het
Fam43a T A 16: 30,420,277 (GRCm39) V287E probably benign Het
Gm5134 A G 10: 75,844,450 (GRCm39) E602G probably benign Het
Gtsf2 C T 15: 103,348,063 (GRCm39) G149E probably benign Het
Kif20a G A 18: 34,765,468 (GRCm39) A822T probably benign Het
Klhl6 T C 16: 19,801,570 (GRCm39) T62A probably benign Het
Lamb1 T A 12: 31,348,954 (GRCm39) I662N possibly damaging Het
Lmod3 A G 6: 97,224,963 (GRCm39) V286A probably damaging Het
Mefv T C 16: 3,533,797 (GRCm39) D158G probably damaging Het
Mff T C 1: 82,728,327 (GRCm39) probably null Het
Mfsd6l G T 11: 68,448,036 (GRCm39) V296L possibly damaging Het
Neu2 G T 1: 87,524,478 (GRCm39) Q154H probably damaging Het
Or5m3b A G 2: 85,871,795 (GRCm39) I45M probably benign Het
Pdk4 T A 6: 5,487,452 (GRCm39) H266L probably benign Het
Pdrg1 T C 2: 152,855,975 (GRCm39) N40D probably damaging Het
Pi4k2a T C 19: 42,093,924 (GRCm39) probably null Het
Pkd1l2 T A 8: 117,781,750 (GRCm39) D765V probably damaging Het
Pspc1 A T 14: 56,999,498 (GRCm39) probably null Het
Ptprm T C 17: 67,352,976 (GRCm39) probably null Het
Spata31d1d T C 13: 59,875,054 (GRCm39) K827R possibly damaging Het
Srebf2 T A 15: 82,053,987 (GRCm39) F46Y probably damaging Het
Tfrc T A 16: 32,439,230 (GRCm39) C365S possibly damaging Het
Ttc7 A G 17: 87,629,900 (GRCm39) H294R possibly damaging Het
Ubr7 T A 12: 102,727,753 (GRCm39) Y92N probably damaging Het
Vmn1r42 A C 6: 89,821,761 (GRCm39) Y269* probably null Het
Vps13c A G 9: 67,889,904 (GRCm39) probably null Het
Vps50 T C 6: 3,536,965 (GRCm39) L312P probably damaging Het
Wdr82 A G 9: 106,062,503 (GRCm39) Q252R probably benign Het
Zcchc3 A G 2: 152,256,444 (GRCm39) F85S probably damaging Het
Zfhx3 T C 8: 109,520,078 (GRCm39) L400P probably damaging Het
Other mutations in Vmn2r1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00233:Vmn2r1 APN 3 64,012,389 (GRCm39) nonsense probably null
IGL00335:Vmn2r1 APN 3 64,012,809 (GRCm39) missense probably damaging 0.96
IGL01509:Vmn2r1 APN 3 64,010,466 (GRCm39) missense probably benign 0.03
IGL01641:Vmn2r1 APN 3 64,011,924 (GRCm39) missense probably benign 0.19
IGL01656:Vmn2r1 APN 3 63,989,274 (GRCm39) missense probably damaging 0.96
IGL01927:Vmn2r1 APN 3 63,989,105 (GRCm39) missense probably benign 0.01
IGL02093:Vmn2r1 APN 3 64,012,130 (GRCm39) missense probably benign
IGL02146:Vmn2r1 APN 3 64,012,104 (GRCm39) missense probably benign 0.39
IGL02186:Vmn2r1 APN 3 63,989,138 (GRCm39) missense probably benign 0.01
IGL02320:Vmn2r1 APN 3 63,989,180 (GRCm39) missense possibly damaging 0.61
IGL02423:Vmn2r1 APN 3 63,997,665 (GRCm39) missense probably benign 0.00
IGL02709:Vmn2r1 APN 3 64,012,355 (GRCm39) missense probably benign 0.24
R0034:Vmn2r1 UTSW 3 63,997,435 (GRCm39) missense probably damaging 1.00
R0064:Vmn2r1 UTSW 3 64,012,209 (GRCm39) missense possibly damaging 0.76
R0152:Vmn2r1 UTSW 3 63,989,240 (GRCm39) missense possibly damaging 0.92
R0305:Vmn2r1 UTSW 3 63,997,087 (GRCm39) missense probably damaging 1.00
R0314:Vmn2r1 UTSW 3 63,993,980 (GRCm39) missense probably damaging 1.00
R0317:Vmn2r1 UTSW 3 63,989,240 (GRCm39) missense possibly damaging 0.92
R0465:Vmn2r1 UTSW 3 63,989,180 (GRCm39) missense possibly damaging 0.61
R1144:Vmn2r1 UTSW 3 63,997,541 (GRCm39) missense probably damaging 1.00
R1163:Vmn2r1 UTSW 3 63,994,046 (GRCm39) missense probably benign 0.03
R1448:Vmn2r1 UTSW 3 64,008,734 (GRCm39) missense probably damaging 1.00
R1491:Vmn2r1 UTSW 3 63,997,034 (GRCm39) missense probably damaging 1.00
R1543:Vmn2r1 UTSW 3 63,996,994 (GRCm39) missense probably damaging 1.00
R1611:Vmn2r1 UTSW 3 64,011,958 (GRCm39) nonsense probably null
R1676:Vmn2r1 UTSW 3 63,997,603 (GRCm39) nonsense probably null
R1727:Vmn2r1 UTSW 3 63,989,163 (GRCm39) missense probably benign
R1851:Vmn2r1 UTSW 3 64,008,926 (GRCm39) missense probably benign 0.32
R3080:Vmn2r1 UTSW 3 63,997,205 (GRCm39) missense probably damaging 1.00
R3790:Vmn2r1 UTSW 3 63,994,185 (GRCm39) critical splice donor site probably null
R4111:Vmn2r1 UTSW 3 63,997,176 (GRCm39) missense probably benign 0.23
R4689:Vmn2r1 UTSW 3 64,012,074 (GRCm39) missense possibly damaging 0.94
R4747:Vmn2r1 UTSW 3 63,989,267 (GRCm39) missense probably benign 0.00
R4970:Vmn2r1 UTSW 3 63,997,544 (GRCm39) missense possibly damaging 0.81
R5033:Vmn2r1 UTSW 3 64,012,501 (GRCm39) missense probably damaging 1.00
R5086:Vmn2r1 UTSW 3 63,997,418 (GRCm39) missense probably benign 0.00
R5112:Vmn2r1 UTSW 3 63,997,544 (GRCm39) missense possibly damaging 0.81
R5385:Vmn2r1 UTSW 3 64,008,819 (GRCm39) missense possibly damaging 0.89
R5629:Vmn2r1 UTSW 3 64,012,538 (GRCm39) missense possibly damaging 0.87
R5762:Vmn2r1 UTSW 3 63,997,474 (GRCm39) missense probably benign 0.24
R5893:Vmn2r1 UTSW 3 63,993,974 (GRCm39) missense probably damaging 1.00
R6037:Vmn2r1 UTSW 3 63,989,150 (GRCm39) missense probably benign 0.00
R6037:Vmn2r1 UTSW 3 63,989,150 (GRCm39) missense probably benign 0.00
R6290:Vmn2r1 UTSW 3 64,012,873 (GRCm39) missense probably benign 0.02
R6443:Vmn2r1 UTSW 3 64,012,374 (GRCm39) missense possibly damaging 0.78
R6464:Vmn2r1 UTSW 3 64,008,766 (GRCm39) missense probably benign
R6826:Vmn2r1 UTSW 3 64,012,567 (GRCm39) nonsense probably null
R6874:Vmn2r1 UTSW 3 64,012,376 (GRCm39) missense probably damaging 1.00
R6882:Vmn2r1 UTSW 3 63,997,529 (GRCm39) missense possibly damaging 0.64
R6983:Vmn2r1 UTSW 3 63,989,118 (GRCm39) missense probably benign
R7010:Vmn2r1 UTSW 3 64,012,146 (GRCm39) missense probably benign 0.19
R7144:Vmn2r1 UTSW 3 63,997,362 (GRCm39) missense probably damaging 1.00
R7341:Vmn2r1 UTSW 3 64,012,877 (GRCm39) makesense probably null
R7510:Vmn2r1 UTSW 3 63,993,922 (GRCm39) missense probably damaging 1.00
R7557:Vmn2r1 UTSW 3 63,997,475 (GRCm39) missense probably damaging 0.99
R7895:Vmn2r1 UTSW 3 63,997,130 (GRCm39) missense possibly damaging 0.90
R8108:Vmn2r1 UTSW 3 64,010,471 (GRCm39) missense probably damaging 0.98
R8209:Vmn2r1 UTSW 3 63,997,199 (GRCm39) missense possibly damaging 0.64
R8365:Vmn2r1 UTSW 3 63,994,034 (GRCm39) missense possibly damaging 0.80
R8514:Vmn2r1 UTSW 3 63,993,942 (GRCm39) missense probably benign 0.11
R8554:Vmn2r1 UTSW 3 63,997,334 (GRCm39) missense probably damaging 0.98
R8980:Vmn2r1 UTSW 3 64,010,501 (GRCm39) missense
R9140:Vmn2r1 UTSW 3 63,997,465 (GRCm39) missense probably benign 0.05
R9239:Vmn2r1 UTSW 3 64,011,959 (GRCm39) missense probably damaging 0.99
R9441:Vmn2r1 UTSW 3 64,012,674 (GRCm39) missense probably damaging 1.00
R9549:Vmn2r1 UTSW 3 63,997,493 (GRCm39) missense probably benign 0.17
R9771:Vmn2r1 UTSW 3 63,997,559 (GRCm39) missense possibly damaging 0.79
X0065:Vmn2r1 UTSW 3 63,997,678 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- GTGAACATTGTCCAGGTCTTTAAC -3'
(R):5'- GCTTGCCTATGAACAGCAAGG -3'

Sequencing Primer
(F):5'- GTCCAGGTCTTTAACTTTCCTAGAC -3'
(R):5'- CTTGCCTATGAACAGCAAGGAAGAC -3'
Posted On 2017-02-10