Mutagenetix > Incidental Mutation

Incidental Mutation 'R5869:Wdr82'

454333

Institutional Source

Beutler Lab

Gene Symbol

Wdr82

Ensembl Gene

ENSMUSG00000020257

Gene Name

WD repeat domain containing 82

Synonyms

9430077D24Rik

MMRRC Submission

044077-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.955) question?

Stock #

R5869 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

106048127-106068338 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 106062503 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Arginine at position 252 (Q252R)

Ref Sequence

ENSEMBL: ENSMUSP00000020490 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020490] [ENSMUST00000190564] [ENSMUST00000214444] [ENSMUST00000216761]

AlphaFold

Q8BFQ4

Predicted Effect

probably benign
Transcript: ENSMUST00000020490
AA Change: Q252R

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000020490
Gene: ENSMUSG00000020257
AA Change: Q252R

Domain	Start	End	E-Value	Type
WD40	10	49	9.52e-6	SMART
WD40	96	135	3.47e-8	SMART
WD40	138	175	4.11e1	SMART
WD40	180	222	2.75e1	SMART
WD40	225	267	2.49e-1	SMART
WD40	270	308	1.33e0	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000190564

Predicted Effect

probably benign
Transcript: ENSMUST00000214444

Predicted Effect

probably benign
Transcript: ENSMUST00000216761

Predicted Effect

probably benign
Transcript: ENSMUST00000217532

Meta Mutation Damage Score

0.0654

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.5%
20x: 92.1%

Validation Efficiency

93% (68/73)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] TMEM113 (WDR82) is a component of the mammalian SET1A (MIM 611052)/SET1B (MIM 611055) histone H3-Lys4 methyltransferase complexes (Lee and Skalnik, 2005 [PubMed 16253997]; Lee et al., 2007 [PubMed 17355966]).[supplied by OMIM, Jul 2010]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adarb1	T	C	10: 77,161,450 (GRCm39)		probably benign	Het
Arsk	T	C	13: 76,239,903 (GRCm39)	E100G	probably benign	Het
Ascc3	C	T	10: 50,718,279 (GRCm39)	R1991*	probably null	Het
Aspscr1	T	C	11: 120,579,746 (GRCm39)	I31T	possibly damaging	Het
Asz1	T	C	6: 18,074,939 (GRCm39)		probably benign	Het
Calm5	T	A	13: 3,904,321 (GRCm39)		probably benign	Het
Car5a	G	A	8: 122,643,119 (GRCm39)	T295I	probably benign	Het
Ccdc174	T	A	6: 91,862,399 (GRCm39)		probably benign	Het
Celsr2	G	A	3: 108,321,225 (GRCm39)	A529V	probably damaging	Het
Cep192	A	G	18: 67,948,935 (GRCm39)	D252G	probably benign	Het
Clcnka	A	G	4: 141,122,276 (GRCm39)	F217L	probably benign	Het
Cnot3	A	T	7: 3,647,929 (GRCm39)		probably benign	Het
Coro1c	A	G	5: 113,988,907 (GRCm39)		probably benign	Het
Cstf3	A	G	2: 104,489,585 (GRCm39)		probably null	Het
Dcdc2a	C	T	13: 25,291,713 (GRCm39)	P233S	probably benign	Het
Ddx55	A	G	5: 124,706,745 (GRCm39)	T581A	probably benign	Het
Exo1	T	C	1: 175,728,849 (GRCm39)	S638P	possibly damaging	Het
Fam135a	T	C	1: 24,068,511 (GRCm39)	E616G	possibly damaging	Het
Fignl2	T	C	15: 100,951,161 (GRCm39)	S374G	unknown	Het
Gm4799	A	T	10: 82,790,283 (GRCm39)		noncoding transcript	Het
Hectd4	T	C	5: 121,481,288 (GRCm39)		probably null	Het
Ighv1-76	T	C	12: 115,811,658 (GRCm39)	E65G	probably damaging	Het
Igsf9b	C	A	9: 27,234,531 (GRCm39)	H465Q	probably benign	Het
Itga9	A	G	9: 118,492,957 (GRCm39)	D284G	probably damaging	Het
Itpr1	T	C	6: 108,450,490 (GRCm39)	S1940P	probably benign	Het
Kcnb1	A	G	2: 167,029,991 (GRCm39)	S185P	probably benign	Het
Kif20a	G	A	18: 34,765,468 (GRCm39)	A822T	probably benign	Het
Krt1	A	T	15: 101,758,566 (GRCm39)	F199L	probably damaging	Het
Lpin2	A	G	17: 71,539,271 (GRCm39)		probably benign	Het
Lrp1b	A	C	2: 40,894,615 (GRCm39)	D2204E	probably damaging	Het
Mier3	T	A	13: 111,851,384 (GRCm39)	N427K	probably damaging	Het
Mmp12	GTAATAATAATAATAATAAT	GTAATAATAATAATAAT	9: 7,348,446 (GRCm39)		probably benign	Het
Mroh3	T	A	1: 136,113,861 (GRCm39)	M643L	probably benign	Het
Myh11	A	G	16: 14,048,664 (GRCm39)	S548P	probably damaging	Het
Nat8f6	A	C	6: 85,785,505 (GRCm39)	L215V	possibly damaging	Het
Nlrp3	G	A	11: 59,438,960 (GRCm39)	R179Q	probably damaging	Het
Nup88	T	C	11: 70,860,497 (GRCm39)	E94G	probably benign	Het
Pias1	A	T	9: 62,820,048 (GRCm39)	D306E	probably benign	Het
Pick1	A	G	15: 79,133,095 (GRCm39)	D385G	probably benign	Het
Pitx3	A	T	19: 46,125,735 (GRCm39)		probably benign	Het
Plpp3	T	A	4: 105,052,159 (GRCm39)		probably null	Het
Prlhr	C	A	19: 60,456,059 (GRCm39)	R169L	probably damaging	Het
Ptprf	A	C	4: 118,067,579 (GRCm39)	M1872R	probably damaging	Het
Ptprh	T	C	7: 4,604,939 (GRCm39)	D35G	probably benign	Het
Rnf130	A	G	11: 49,976,642 (GRCm39)		probably null	Het
Rnf17	A	C	14: 56,743,445 (GRCm39)	E1337A	possibly damaging	Het
Sdk2	A	G	11: 113,742,708 (GRCm39)	Y734H	probably damaging	Het
Slc25a10	C	T	11: 120,388,943 (GRCm39)	T269I	probably damaging	Het
Slc4a11	A	C	2: 130,526,379 (GRCm39)	V855G	probably benign	Het
Slc5a5	C	A	8: 71,344,974 (GRCm39)	R111L	probably damaging	Het
Spart	A	T	3: 55,042,931 (GRCm39)	M616L	probably benign	Het
Tmem229a	T	C	6: 24,954,686 (GRCm39)	D356G	probably damaging	Het
Tmem30c	A	G	16: 57,086,925 (GRCm39)	S293P	probably damaging	Het
Tnfrsf14	C	A	4: 155,011,055 (GRCm39)		probably null	Het
Tnfrsf19	C	T	14: 61,208,627 (GRCm39)	R298H	possibly damaging	Het
Ttc21a	A	G	9: 119,787,858 (GRCm39)	K809E	probably benign	Het
Ttn	G	A	2: 76,580,553 (GRCm39)	P23447S	probably damaging	Het
Uap1	T	A	1: 169,978,707 (GRCm39)		probably null	Het
Zfp523	T	C	17: 28,413,967 (GRCm39)	I34T	probably benign	Het
Zfp808	T	A	13: 62,319,069 (GRCm39)	H99Q	probably damaging	Het

Other mutations in Wdr82

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00332:Wdr82	APN	9	106,061,449 (GRCm39)	missense	probably benign	0.19
IGL02135:Wdr82	APN	9	106,048,443 (GRCm39)	missense	possibly damaging	0.94
IGL02604:Wdr82	APN	9	106,060,880 (GRCm39)	missense	probably damaging	0.99
IGL02627:Wdr82	APN	9	106,053,886 (GRCm39)	missense	possibly damaging	0.72
IGL03181:Wdr82	APN	9	106,063,614 (GRCm39)	missense	probably benign	0.00
R0844:Wdr82	UTSW	9	106,065,780 (GRCm39)	unclassified	probably benign
R5867:Wdr82	UTSW	9	106,062,503 (GRCm39)	missense	probably benign	0.00
R7136:Wdr82	UTSW	9	106,048,532 (GRCm39)	missense	probably benign	0.07
R7228:Wdr82	UTSW	9	106,053,871 (GRCm39)	missense	probably benign
R7481:Wdr82	UTSW	9	106,053,865 (GRCm39)	missense	probably damaging	0.98
R8826:Wdr82	UTSW	9	106,061,975 (GRCm39)	missense	probably benign	0.29
R8964:Wdr82	UTSW	9	106,053,861 (GRCm39)	missense	possibly damaging	0.66
Z1088:Wdr82	UTSW	9	106,061,999 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CAGCTACACTTGGTCTTAGTGAC -3'
(R):5'- AGGAACTCATGCCAGTGTTAG -3'

Sequencing Primer
(F):5'- GTCTTAGTGACATTGCACAGAGACC -3'
(R):5'- TCTGAAGGTCCGGAGTTCAAATCC -3'

Posted On

2017-02-10