Incidental Mutation 'R5880:Or4k6'
| ID |
454384 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or4k6
|
| Ensembl Gene |
ENSMUSG00000048080 |
| Gene Name |
olfactory receptor family 4 subfamily K member 6 |
| Synonyms |
Olfr731, GA_x6K02T2PMLR-5936117-5935137, MOR246-5 |
| MMRRC Submission |
043235-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.072)
|
| Stock # |
R5880 (G1)
|
| Quality Score |
200 |
|
Status
|
Not validated
|
| Chromosome |
14 |
| Chromosomal Location |
50475360-50476340 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 50476172 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Proline
at position 57
(S57P)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000150683
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000059565]
[ENSMUST00000214152]
[ENSMUST00000214388]
|
| AlphaFold |
F8VQB9 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000059565
AA Change: S57P
PolyPhen 2
Score 0.954 (Sensitivity: 0.79; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000050705
Gene: ENSMUSG00000048080
AA Change: S57P
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
31 |
305 |
8.5e-51 |
PFAM |
|
Pfam:7tm_1
|
41 |
287 |
5.5e-17 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000213322
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000214152
AA Change: S57P
PolyPhen 2
Score 0.954 (Sensitivity: 0.79; Specificity: 0.95)
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000214388
AA Change: S57P
PolyPhen 2
Score 0.954 (Sensitivity: 0.79; Specificity: 0.95)
|
| Coding Region Coverage |
- 1x: 99.8%
- 3x: 99.2%
- 10x: 93.4%
- 20x: 74.5%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 24 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acaa2 |
G |
A |
18: 74,937,072 (GRCm39) |
V319M |
probably damaging |
Het |
| Actrt2 |
T |
A |
4: 154,751,747 (GRCm39) |
T130S |
probably benign |
Het |
| Ap1g2 |
A |
G |
14: 55,340,157 (GRCm39) |
S392P |
probably damaging |
Het |
| Cby2 |
C |
T |
14: 75,821,243 (GRCm39) |
V119I |
probably benign |
Het |
| Cdh23 |
T |
A |
10: 60,220,713 (GRCm39) |
N1344Y |
probably damaging |
Het |
| Cyp4x1 |
A |
T |
4: 114,965,918 (GRCm39) |
H469Q |
possibly damaging |
Het |
| Dhodh |
T |
A |
8: 110,321,409 (GRCm39) |
T326S |
probably benign |
Het |
| Ebf3 |
T |
G |
7: 136,800,367 (GRCm39) |
N529T |
probably benign |
Het |
| Echdc2 |
A |
C |
4: 108,030,097 (GRCm39) |
I133L |
possibly damaging |
Het |
| Fbn2 |
A |
T |
18: 58,156,354 (GRCm39) |
C2488* |
probably null |
Het |
| Fndc3b |
T |
A |
3: 27,483,052 (GRCm39) |
T1049S |
probably damaging |
Het |
| Igsf10 |
T |
C |
3: 59,238,252 (GRCm39) |
Y643C |
probably damaging |
Het |
| Il15ra |
A |
G |
2: 11,735,426 (GRCm39) |
*104W |
probably null |
Het |
| Iqgap3 |
T |
A |
3: 88,024,509 (GRCm39) |
S628R |
possibly damaging |
Het |
| Lrp1b |
C |
T |
2: 41,231,826 (GRCm39) |
V1215M |
probably benign |
Het |
| Mmp20 |
G |
A |
9: 7,655,002 (GRCm39) |
R370Q |
probably benign |
Het |
| Or10al4 |
T |
C |
17: 38,037,545 (GRCm39) |
V219A |
probably benign |
Het |
| Or4d5 |
A |
T |
9: 40,012,543 (GRCm39) |
M81K |
possibly damaging |
Het |
| Patj |
A |
T |
4: 98,299,382 (GRCm39) |
H168L |
probably damaging |
Het |
| Peak1 |
A |
T |
9: 56,114,894 (GRCm39) |
I319N |
probably damaging |
Het |
| Rgs20 |
A |
T |
1: 4,994,104 (GRCm39) |
C93S |
probably damaging |
Het |
| Sh3tc2 |
A |
T |
18: 62,106,382 (GRCm39) |
H137L |
probably benign |
Het |
| Sycp2 |
A |
G |
2: 178,016,263 (GRCm39) |
V733A |
possibly damaging |
Het |
| Tet3 |
G |
C |
6: 83,347,532 (GRCm39) |
P1154R |
probably damaging |
Het |
|
| Other mutations in Or4k6 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01488:Or4k6
|
APN |
14 |
50,475,595 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
IGL02304:Or4k6
|
APN |
14 |
50,476,217 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02395:Or4k6
|
APN |
14 |
50,475,886 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03079:Or4k6
|
APN |
14 |
50,475,581 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R0646:Or4k6
|
UTSW |
14 |
50,476,096 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1253:Or4k6
|
UTSW |
14 |
50,475,581 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2027:Or4k6
|
UTSW |
14 |
50,475,406 (GRCm39) |
missense |
probably benign |
|
|
R2364:Or4k6
|
UTSW |
14 |
50,475,612 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4714:Or4k6
|
UTSW |
14 |
50,475,824 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
R4749:Or4k6
|
UTSW |
14 |
50,476,190 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R6954:Or4k6
|
UTSW |
14 |
50,475,567 (GRCm39) |
nonsense |
probably null |
|
|
R7295:Or4k6
|
UTSW |
14 |
50,476,073 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7419:Or4k6
|
UTSW |
14 |
50,475,448 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R7457:Or4k6
|
UTSW |
14 |
50,475,825 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8806:Or4k6
|
UTSW |
14 |
50,475,376 (GRCm39) |
missense |
probably benign |
0.09 |
|
R9350:Or4k6
|
UTSW |
14 |
50,475,407 (GRCm39) |
missense |
probably benign |
|
|
R9446:Or4k6
|
UTSW |
14 |
50,475,974 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- ACCGTCCAAGATGCTATTACAAG -3'
(R):5'- AGATGGAGAGGCTTAACCATTCC -3'
Sequencing Primer
(F):5'- AGTCCAACACACACTTTTTGG -3'
(R):5'- ATTCCAGAGTGCCGGAATTC -3'
|
| Posted On |
2017-02-10 |
Incidental Mutation