Incidental Mutation 'R5853:Vmn1r213'
ID 454779
Institutional Source Beutler Lab
Gene Symbol Vmn1r213
Ensembl Gene ENSMUSG00000060024
Gene Name vomeronasal 1 receptor 213
Synonyms V1rh6
MMRRC Submission 044068-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.078) question?
Stock # R5853 (G1)
Quality Score 225
Status Not validated
Chromosome 13
Chromosomal Location 23195419-23196573 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to G at 23195684 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Leucine to Tryptophan at position 3 (L3W)
Ref Sequence ENSEMBL: ENSMUSP00000154625 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000076897] [ENSMUST00000227573] [ENSMUST00000228031] [ENSMUST00000228758]
AlphaFold Q8R278
Predicted Effect probably benign
Transcript: ENSMUST00000076897
AA Change: L89W

PolyPhen 2 Score 0.154 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000076163
Gene: ENSMUSG00000060024
AA Change: L89W

DomainStartEndE-ValueType
transmembrane domain 95 117 N/A INTRINSIC
Pfam:V1R 118 382 4.3e-31 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000227573
AA Change: L3W

PolyPhen 2 Score 0.318 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000228031
AA Change: L3W

PolyPhen 2 Score 0.318 (Sensitivity: 0.90; Specificity: 0.89)
Predicted Effect probably benign
Transcript: ENSMUST00000228758
AA Change: L89W

PolyPhen 2 Score 0.154 (Sensitivity: 0.92; Specificity: 0.87)
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.4%
  • 20x: 95.7%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 52 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca15 G A 7: 119,939,806 (GRCm39) V303I probably benign Het
Abca4 G T 3: 121,897,180 (GRCm39) V620L probably benign Het
Ankk1 A T 9: 49,329,995 (GRCm39) V320E possibly damaging Het
Aoah G T 13: 21,184,072 (GRCm39) A379S probably benign Het
Apol7e A G 15: 77,598,667 (GRCm39) D44G probably benign Het
Atf2 T C 2: 73,658,813 (GRCm39) probably null Het
Cd209b T C 8: 3,976,549 (GRCm39) probably null Het
Chek1 G A 9: 36,624,983 (GRCm39) S366L probably damaging Het
Chpf2 T C 5: 24,797,190 (GRCm39) L712P probably damaging Het
Clmn C A 12: 104,750,161 (GRCm39) probably null Het
Cnksr3 T C 10: 7,092,977 (GRCm39) D178G probably benign Het
Cpox T C 16: 58,495,780 (GRCm39) Y366H probably damaging Het
Dnah3 A G 7: 119,538,056 (GRCm39) F3632S probably damaging Het
Eif5b T A 1: 38,076,388 (GRCm39) D645E probably damaging Het
Emilin1 G A 5: 31,075,966 (GRCm39) E736K probably damaging Het
Gcnt4 G A 13: 97,083,160 (GRCm39) R152Q probably benign Het
Il6st T C 13: 112,618,071 (GRCm39) S162P probably damaging Het
Iqub T C 6: 24,491,601 (GRCm39) K362E probably benign Het
Kif22 G T 7: 126,632,539 (GRCm39) P257Q possibly damaging Het
Lhx2 T C 2: 38,259,053 (GRCm39) V378A probably damaging Het
Lipo3 A G 19: 33,759,630 (GRCm39) V202A probably benign Het
Lrp1b T A 2: 40,553,738 (GRCm39) N366I unknown Het
Mbip T C 12: 56,382,662 (GRCm39) D268G probably damaging Het
Mc5r A G 18: 68,472,564 (GRCm39) M308V probably benign Het
Mndal C A 1: 173,690,070 (GRCm39) G420V probably damaging Het
Nbea A T 3: 55,899,822 (GRCm39) N1442K probably damaging Het
Ndufv1 A T 19: 4,058,811 (GRCm39) probably null Het
Ofcc1 A G 13: 40,360,193 (GRCm39) S279P probably benign Het
Or4k2 A T 14: 50,424,326 (GRCm39) M116K possibly damaging Het
Or6b2b T C 1: 92,419,439 (GRCm39) I13V probably benign Het
Pabpc1l A T 2: 163,891,438 (GRCm39) H552L probably benign Het
Pigr T A 1: 130,774,341 (GRCm39) C440* probably null Het
Pramel11 A G 4: 143,623,490 (GRCm39) V228A probably benign Het
Prss30 C T 17: 24,191,820 (GRCm39) V271I probably damaging Het
Psme4 T A 11: 30,741,234 (GRCm39) probably null Het
Qrich1 T A 9: 108,410,807 (GRCm39) probably benign Het
Rem1 C G 2: 152,470,200 (GRCm39) A62G possibly damaging Het
Rftn1 T C 17: 50,354,354 (GRCm39) N58S probably damaging Het
Rp9 G A 9: 22,360,065 (GRCm39) probably benign Het
Rrp1b G A 17: 32,275,658 (GRCm39) V402I possibly damaging Het
Slc25a33 A T 4: 149,838,349 (GRCm39) Y108N probably benign Het
Slc3a1 A G 17: 85,340,008 (GRCm39) M189V probably damaging Het
Slc44a1 A C 4: 53,528,682 (GRCm39) K144T probably benign Het
Tbc1d13 T A 2: 30,027,393 (GRCm39) H100Q probably damaging Het
Timm29 T C 9: 21,504,749 (GRCm39) V139A probably damaging Het
Tmem70 T C 1: 16,735,556 (GRCm39) W9R possibly damaging Het
Tspan1 A G 4: 116,020,502 (GRCm39) probably null Het
Unc13a T C 8: 72,107,773 (GRCm39) probably null Het
Uroc1 T C 6: 90,323,738 (GRCm39) F395S probably damaging Het
Uvrag A C 7: 98,537,284 (GRCm39) L637R possibly damaging Het
Zfp280d C T 9: 72,238,224 (GRCm39) T528I probably benign Het
Zfp526 C T 7: 24,924,601 (GRCm39) Q287* probably null Het
Other mutations in Vmn1r213
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0018:Vmn1r213 UTSW 13 23,196,311 (GRCm39) missense probably damaging 1.00
R0094:Vmn1r213 UTSW 13 23,195,819 (GRCm39) missense probably damaging 1.00
R0324:Vmn1r213 UTSW 13 23,195,588 (GRCm39) intron probably benign
R0389:Vmn1r213 UTSW 13 23,195,932 (GRCm39) missense probably benign 0.00
R0650:Vmn1r213 UTSW 13 23,195,564 (GRCm39) intron probably benign
R0652:Vmn1r213 UTSW 13 23,195,564 (GRCm39) intron probably benign
R1902:Vmn1r213 UTSW 13 23,196,476 (GRCm39) missense possibly damaging 0.87
R1996:Vmn1r213 UTSW 13 23,196,473 (GRCm39) missense probably benign 0.02
R1997:Vmn1r213 UTSW 13 23,196,473 (GRCm39) missense probably benign 0.02
R4214:Vmn1r213 UTSW 13 23,196,173 (GRCm39) missense possibly damaging 0.95
R4409:Vmn1r213 UTSW 13 23,195,593 (GRCm39) intron probably benign
R4650:Vmn1r213 UTSW 13 23,196,422 (GRCm39) missense possibly damaging 0.80
R4685:Vmn1r213 UTSW 13 23,195,800 (GRCm39) missense probably benign 0.05
R4698:Vmn1r213 UTSW 13 23,195,507 (GRCm39) intron probably benign
R4799:Vmn1r213 UTSW 13 23,196,016 (GRCm39) missense probably damaging 1.00
R4807:Vmn1r213 UTSW 13 23,195,775 (GRCm39) nonsense probably null
R7389:Vmn1r213 UTSW 13 23,196,556 (GRCm39) missense probably benign 0.18
R7414:Vmn1r213 UTSW 13 23,195,446 (GRCm39) missense unknown
R8054:Vmn1r213 UTSW 13 23,195,910 (GRCm39) missense possibly damaging 0.93
R9069:Vmn1r213 UTSW 13 23,196,043 (GRCm39) missense probably damaging 1.00
R9155:Vmn1r213 UTSW 13 23,196,343 (GRCm39) nonsense probably null
R9428:Vmn1r213 UTSW 13 23,195,944 (GRCm39) missense
R9469:Vmn1r213 UTSW 13 23,196,101 (GRCm39) missense probably benign 0.22
R9633:Vmn1r213 UTSW 13 23,195,519 (GRCm39) missense unknown
Predicted Primers PCR Primer
(F):5'- CTGATTCCCTGAGGGTTGAG -3'
(R):5'- CAGCCTATGTCATCCAAGAAATTTC -3'

Sequencing Primer
(F):5'- TTGAGGGACCCACTGAGTC -3'
(R):5'- CCAAAAGCTGCTATTGTCTTAGGC -3'
Posted On 2017-02-10