Mutagenetix > Incidental Mutation

Incidental Mutation 'R0555:Hbs1l'

45493

Institutional Source

Beutler Lab

Gene Symbol

Hbs1l

Ensembl Gene

ENSMUSG00000019977

Gene Name

Hbs1-like (S. cerevisiae)

Synonyms

2810035F15Rik, eRFS

MMRRC Submission

038747-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0555 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

21295979-21368898 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 21349323 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Histidine at position 412 (Q412H)

Ref Sequence

ENSEMBL: ENSMUSP00000151689 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020153] [ENSMUST00000218714] [ENSMUST00000219915]

AlphaFold

Q69ZS7

Predicted Effect

probably benign
Transcript: ENSMUST00000020153
AA Change: Q409H

PolyPhen 2 Score 0.091 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000020153
Gene: ENSMUSG00000019977
AA Change: Q409H

Domain	Start	End	E-Value	Type
Pfam:HBS1_N	33	125	1e-22	PFAM
low complexity region	142	155	N/A	INTRINSIC
Pfam:GTP_EFTU	256	521	1.7e-48	PFAM
Pfam:GTP_EFTU_D3	572	681	9.2e-34	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000218714
AA Change: Q98H

PolyPhen 2 Score 0.020 (Sensitivity: 0.95; Specificity: 0.80)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000219345

Predicted Effect

probably benign
Transcript: ENSMUST00000219915
AA Change: Q412H

PolyPhen 2 Score 0.139 (Sensitivity: 0.92; Specificity: 0.86)

Meta Mutation Damage Score

0.1124

Coding Region Coverage

1x: 99.6%
3x: 98.8%
10x: 96.9%
20x: 93.8%

Validation Efficiency

100% (98/98)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the GTP-binding elongation factor family. It is expressed in multiple tissues with the highest expression in heart and skeletal muscle. The intergenic region of this gene and the MYB gene has been identified to be a quantitative trait locus (QTL) controlling fetal hemoglobin level, and this region influnces erythrocyte, platelet, and monocyte counts as well as erythrocyte volume and hemoglobin content. DNA polymorphisms at this region associate with fetal hemoglobin levels and pain crises in sickle cell disease. A single nucleotide polymorphism in exon 1 of this gene is significantly associated with severity in beta-thalassemia/Hemoglobin E. Multiple alternatively spliced transcript variants encoding different protein isoforms have been found for this gene. [provided by RefSeq, May 2009]

Allele List at MGI

Other mutations in this stock

Total: 96 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam10	T	A	9: 70,754,234 (GRCm38)	I363N	probably damaging	Het
Ahcyl2	T	C	6: 29,890,671 (GRCm38)		probably benign	Het
Asap1	A	G	15: 64,094,364 (GRCm38)	L941P	probably damaging	Het
Aurka	G	A	2: 172,367,147 (GRCm38)	R23C	probably benign	Het
Cacna1c	C	T	6: 118,612,625 (GRCm38)	R1446H	probably damaging	Het
Casp8ap2	T	A	4: 32,640,381 (GRCm38)	H478Q	probably damaging	Het
Clcn4	C	T	7: 7,290,504 (GRCm38)	A418T	possibly damaging	Het
Cpxm2	A	T	7: 132,044,043 (GRCm38)	Y715*	probably null	Het
Csmd1	T	C	8: 16,185,273 (GRCm38)	M1179V	probably benign	Het
Ddx21	A	T	10: 62,587,528 (GRCm38)	F632I	probably damaging	Het
Dnaic1	C	A	4: 41,625,335 (GRCm38)	T433K	possibly damaging	Het
Dpyd	G	A	3: 119,431,542 (GRCm38)	G988D	probably damaging	Het
Dync1i2	AAAAGAAGAGGAAAGAAGAGGAAAG	AAAAGAAGAGGAAAG	2: 71,214,518 (GRCm38)		probably null	Het
Dync1li2	A	T	8: 104,420,665 (GRCm38)	S466T	probably benign	Het
Ears2	T	C	7: 122,048,444 (GRCm38)	T206A	probably benign	Het
Elmod1	A	T	9: 53,931,592 (GRCm38)		probably benign	Het
Eps8l3	C	A	3: 107,892,345 (GRCm38)	D590E	probably benign	Het
Etfdh	A	T	3: 79,605,805 (GRCm38)	H370Q	probably benign	Het
Fam83g	C	A	11: 61,707,663 (GRCm38)	A792E	probably benign	Het
Ffar3	G	T	7: 30,855,537 (GRCm38)	Y119*	probably null	Het
Fosb	G	T	7: 19,307,213 (GRCm38)	S118R	possibly damaging	Het
Foxn4	G	A	5: 114,263,114 (GRCm38)	L3F	probably damaging	Het
Foxo4	A	G	X: 101,255,178 (GRCm38)	K65E	probably damaging	Het
Frem2	A	G	3: 53,516,860 (GRCm38)	L3052P	probably damaging	Het
Fubp3	G	A	2: 31,608,137 (GRCm38)	R101H	probably damaging	Het
Gba2	C	A	4: 43,569,927 (GRCm38)	G429C	probably damaging	Het
Gimap1	T	C	6: 48,741,429 (GRCm38)		probably benign	Het
Gm17657	A	T	17: 29,519,571 (GRCm38)	F74I	probably benign	Het
Gnas	A	G	2: 174,298,511 (GRCm38)	T158A	possibly damaging	Het
Gpc5	T	C	14: 115,552,328 (GRCm38)	V538A	probably damaging	Het
Greb1l	T	C	18: 10,458,781 (GRCm38)		probably benign	Het
H2-M10.5	G	A	17: 36,774,728 (GRCm38)	G260R	probably damaging	Het
Hecw1	G	T	13: 14,236,941 (GRCm38)	T1058N	probably damaging	Het
Heph	A	T	X: 96,558,084 (GRCm38)	T1027S	probably damaging	Het
Hoga1	A	C	19: 42,046,075 (GRCm38)	E53A	possibly damaging	Het
Insrr	T	G	3: 87,814,437 (GRCm38)		probably benign	Het
Ipo11	A	T	13: 106,892,461 (GRCm38)	V328D	probably damaging	Het
Jakmip1	T	C	5: 37,118,873 (GRCm38)	V509A	probably damaging	Het
Jmjd1c	T	C	10: 67,225,789 (GRCm38)	V1307A	probably benign	Het
Kmt2a	T	A	9: 44,847,571 (GRCm38)	S1027C	probably damaging	Het
Kprp	G	C	3: 92,824,357 (GRCm38)	P462R	unknown	Het
Lman1l	T	C	9: 57,614,101 (GRCm38)	T193A	probably benign	Het
Lrit3	A	T	3: 129,791,296 (GRCm38)	V271D	probably damaging	Het
Map4	T	A	9: 109,979,103 (GRCm38)		probably benign	Het
Mark4	A	C	7: 19,448,673 (GRCm38)		probably benign	Het
Mfsd14b	A	G	13: 65,078,445 (GRCm38)	V142A	probably benign	Het
Mis18bp1	A	T	12: 65,161,453 (GRCm38)	I162N	possibly damaging	Het
Mrpl43	A	T	19: 45,005,952 (GRCm38)		probably benign	Het
Mrpl47	A	G	3: 32,736,693 (GRCm38)	F16S	probably benign	Het
Myh2	G	T	11: 67,178,967 (GRCm38)	G380C	probably damaging	Het
Myo15	T	C	11: 60,521,638 (GRCm38)	Y3284H	probably damaging	Het
Nectin2	A	G	7: 19,733,223 (GRCm38)		probably benign	Het
Neu3	A	G	7: 99,814,183 (GRCm38)	V111A	probably damaging	Het
Nol4l	T	C	2: 153,417,684 (GRCm38)		probably null	Het
Nphp3	C	A	9: 104,023,434 (GRCm38)	H510Q	probably damaging	Het
Nprl3	T	A	11: 32,233,118 (GRCm38)		probably null	Het
Olfr292	A	G	7: 86,695,308 (GRCm38)	N284S	probably damaging	Het
Olfr48	T	C	2: 89,844,443 (GRCm38)	T177A	probably benign	Het
Olfr598	T	C	7: 103,328,963 (GRCm38)	V159A	probably benign	Het
Olfr791	T	C	10: 129,526,896 (GRCm38)	I223T	possibly damaging	Het
Pex1	A	G	5: 3,606,130 (GRCm38)	E319G	possibly damaging	Het
Phtf1	C	A	3: 104,004,469 (GRCm38)	T709K	probably damaging	Het
Plek2	A	T	12: 78,892,172 (GRCm38)	L271Q	probably damaging	Het
Plekhg5	T	A	4: 152,107,469 (GRCm38)	C421*	probably null	Het
Polk	A	C	13: 96,484,179 (GRCm38)	C525W	probably damaging	Het
Ppfibp2	T	C	7: 107,729,174 (GRCm38)	S471P	probably damaging	Het
Prickle2	A	T	6: 92,458,565 (GRCm38)	F74L	probably benign	Het
Prl7d1	A	T	13: 27,712,055 (GRCm38)	V113D	probably benign	Het
Prr14	C	T	7: 127,472,095 (GRCm38)		probably benign	Het
Ptpro	T	A	6: 137,443,594 (GRCm38)	V1007D	probably damaging	Het
Ret	A	G	6: 118,178,610 (GRCm38)	V375A	probably damaging	Het
Rora	T	C	9: 69,361,746 (GRCm38)	F41S	probably damaging	Het
Sall1	T	C	8: 89,031,758 (GRCm38)	T573A	probably benign	Het
Shb	A	G	4: 45,458,321 (GRCm38)	V281A	possibly damaging	Het
Slc25a26	A	T	6: 94,592,410 (GRCm38)		probably null	Het
Sltm	T	C	9: 70,586,081 (GRCm38)	F769L	probably damaging	Het
Snx9	T	A	17: 5,918,413 (GRCm38)	M328K	probably damaging	Het
Stk25	G	T	1: 93,624,591 (GRCm38)	Q356K	probably benign	Het
Svep1	T	A	4: 58,128,858 (GRCm38)	Y613F	possibly damaging	Het
Syne4	G	A	7: 30,316,744 (GRCm38)	A195T	probably damaging	Het
Tmem8	T	C	17: 26,117,114 (GRCm38)	L130S	probably benign	Het
Trcg1	C	T	9: 57,242,333 (GRCm38)	T396M	probably damaging	Het
Trim30b	A	G	7: 104,357,298 (GRCm38)	V117A	possibly damaging	Het
Trpc4	T	C	3: 54,302,090 (GRCm38)		probably benign	Het
Ttll4	A	G	1: 74,688,280 (GRCm38)	H827R	probably damaging	Het
Urgcp	T	C	11: 5,717,477 (GRCm38)	E287G	probably damaging	Het
Usp2	G	T	9: 44,092,784 (GRCm38)	L319F	probably damaging	Het
Vmn1r167	A	T	7: 23,505,087 (GRCm38)	V168D	probably damaging	Het
Vmn2r100	C	A	17: 19,522,120 (GRCm38)	P252Q	possibly damaging	Het
Vmn2r61	A	T	7: 42,266,018 (GRCm38)	I130F	probably benign	Het
Vmn2r63	A	T	7: 42,928,528 (GRCm38)	Y195*	probably null	Het
Vmn2r81	T	C	10: 79,293,449 (GRCm38)	S725P	probably damaging	Het
Wnt10b	A	G	15: 98,772,937 (GRCm38)		probably benign	Het
Zcchc6	A	G	13: 59,800,317 (GRCm38)	V328A	probably benign	Het
Zfp292	T	C	4: 34,807,194 (GRCm38)	E1950G	probably damaging	Het
Zfyve16	A	G	13: 92,516,520 (GRCm38)		probably benign	Het

Other mutations in Hbs1l

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01542:Hbs1l	APN	10	21,307,756 (GRCm38)	missense	probably benign	0.03
IGL02948:Hbs1l	APN	10	21,341,711 (GRCm38)	splice site	probably benign
R0375:Hbs1l	UTSW	10	21,342,541 (GRCm38)	missense	possibly damaging	0.76
R0465:Hbs1l	UTSW	10	21,352,041 (GRCm38)	missense	probably null	0.85
R0909:Hbs1l	UTSW	10	21,307,738 (GRCm38)	missense	probably benign	0.00
R1172:Hbs1l	UTSW	10	21,304,638 (GRCm38)	missense	probably damaging	1.00
R1594:Hbs1l	UTSW	10	21,352,023 (GRCm38)	missense	probably benign	0.00
R1612:Hbs1l	UTSW	10	21,358,835 (GRCm38)	missense	probably damaging	1.00
R1869:Hbs1l	UTSW	10	21,358,406 (GRCm38)	splice site	probably null
R2109:Hbs1l	UTSW	10	21,341,932 (GRCm38)	nonsense	probably null
R2369:Hbs1l	UTSW	10	21,307,745 (GRCm38)	missense	probably benign	0.01
R2404:Hbs1l	UTSW	10	21,296,047 (GRCm38)	start gained	probably benign
R4077:Hbs1l	UTSW	10	21,352,602 (GRCm38)	missense	probably damaging	1.00
R4079:Hbs1l	UTSW	10	21,352,602 (GRCm38)	missense	probably damaging	1.00
R4534:Hbs1l	UTSW	10	21,341,915 (GRCm38)	missense	possibly damaging	0.74
R4796:Hbs1l	UTSW	10	21,342,506 (GRCm38)	missense	probably damaging	1.00
R4852:Hbs1l	UTSW	10	21,358,388 (GRCm38)	missense	possibly damaging	0.92
R5069:Hbs1l	UTSW	10	21,354,647 (GRCm38)	missense	probably damaging	1.00
R5946:Hbs1l	UTSW	10	21,341,756 (GRCm38)	missense	probably benign
R6232:Hbs1l	UTSW	10	21,307,758 (GRCm38)	splice site	probably null
R6264:Hbs1l	UTSW	10	21,367,757 (GRCm38)	missense	possibly damaging	0.92
R6542:Hbs1l	UTSW	10	21,304,617 (GRCm38)	missense	probably benign	0.11
R6831:Hbs1l	UTSW	10	21,341,868 (GRCm38)	missense	probably benign	0.29
R7295:Hbs1l	UTSW	10	21,310,152 (GRCm38)	missense	probably benign	0.12
R7470:Hbs1l	UTSW	10	21,358,784 (GRCm38)	missense	possibly damaging	0.96
R7652:Hbs1l	UTSW	10	21,364,760 (GRCm38)	missense	probably benign	0.02
R7695:Hbs1l	UTSW	10	21,299,217 (GRCm38)	missense	possibly damaging	0.49
R7909:Hbs1l	UTSW	10	21,358,404 (GRCm38)	critical splice donor site	probably null
R8325:Hbs1l	UTSW	10	21,307,649 (GRCm38)	missense	probably benign	0.02
R8353:Hbs1l	UTSW	10	21,309,279 (GRCm38)	missense	probably benign
R8453:Hbs1l	UTSW	10	21,309,279 (GRCm38)	missense	probably benign
R8861:Hbs1l	UTSW	10	21,345,064 (GRCm38)	splice site	probably benign
R8878:Hbs1l	UTSW	10	21,358,812 (GRCm38)	missense	possibly damaging	0.47
R8880:Hbs1l	UTSW	10	21,309,969 (GRCm38)	missense	probably damaging	0.99
R8933:Hbs1l	UTSW	10	21,367,685 (GRCm38)	nonsense	probably null
R9462:Hbs1l	UTSW	10	21,342,405 (GRCm38)	missense	probably damaging	1.00
R9654:Hbs1l	UTSW	10	21,307,705 (GRCm38)	missense	possibly damaging	0.95
X0018:Hbs1l	UTSW	10	21,351,987 (GRCm38)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CCCAAGACTGTGTAGACTTCATTGTCC -3'
(R):5'- ACAAGTGTGGTGTAACCGTAAAGACTG -3'

Sequencing Primer
(F):5'- AGACACTGCTGTTCATAGGC -3'
(R):5'- TGTAACCGTAAAGACTGAATGAAAC -3'

Posted On

2013-06-11