Mutagenetix > Incidental Mutation

Incidental Mutation 'R5872:Crtac1'

455285

Institutional Source

Beutler Lab

Gene Symbol

Crtac1

Ensembl Gene

ENSMUSG00000042401

Gene Name

cartilage acidic protein 1

Synonyms

Lotus, Crtac1B, 2810454P21Rik

MMRRC Submission

044079-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.334) question?

Stock #

R5872 (G1)

Quality Score

167

Status

Not validated

Chromosome

Chromosomal Location

42271474-42421405 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

C to T at 42297629 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000044858 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000048630]

AlphaFold

Q8R555

Predicted Effect

probably null
Transcript: ENSMUST00000048630

SMART Domains

Protein: ENSMUSP00000044858
Gene: ENSMUSG00000042401

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:VCBS	63	133	6.6e-12	PFAM
Pfam:VCBS	254	311	2e-12	PFAM
Pfam:VCBS	300	364	4.9e-13	PFAM
low complexity region	403	417	N/A	INTRINSIC
Pfam:UnbV_ASPIC	459	528	8.9e-18	PFAM
Pfam:EGF_CA	560	606	2.1e-13	PFAM
low complexity region	630	646	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.8%
20x: 93.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a glycosylated extracellular matrix protein that is found in the interterritorial matrix of articular deep zone cartilage. This protein is used as a marker to distinguish chondrocytes from osteoblasts and mesenchymal stem cells in culture. The presence of FG-GAP motifs and an RGD integrin-binding motif suggests that this protein may be involved in cell-cell or cell-matrix interactions. Copy number alterations in this gene have been observed in neurofibromatosis type 1-associated glomus tumors. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2011]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit abnormalities in lateral olfactory tract morphology and axon fasciculation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3425401B19Rik	A	G	14: 32,382,309 (GRCm39)	S1219P	possibly damaging	Het
A2ml1	A	G	6: 128,538,489 (GRCm39)	Y644H	probably damaging	Het
Abca9	T	G	11: 110,007,902 (GRCm39)	R1232S	possibly damaging	Het
Acsf2	C	T	11: 94,463,975 (GRCm39)	V70M	probably benign	Het
Ampd1	A	G	3: 102,986,446 (GRCm39)	I42V	probably benign	Het
Arhgap10	A	G	8: 78,071,267 (GRCm39)		probably null	Het
Atp1a4	A	T	1: 172,071,975 (GRCm39)	L432Q	probably damaging	Het
Bbs12	T	A	3: 37,374,598 (GRCm39)	C349S	possibly damaging	Het
Bnc2	A	G	4: 84,211,007 (GRCm39)	V479A	possibly damaging	Het
Cald1	A	T	6: 34,748,043 (GRCm39)	K761*	probably null	Het
Cd177	C	T	7: 24,451,688 (GRCm39)	G443R	probably null	Het
Cdc42bpb	T	C	12: 111,292,410 (GRCm39)	D375G	probably damaging	Het
Chsy3	T	C	18: 59,309,268 (GRCm39)	Y174H	probably damaging	Het
Cmya5	T	C	13: 93,233,943 (GRCm39)	M382V	probably benign	Het
Col1a2	G	A	6: 4,531,926 (GRCm39)	S782N	unknown	Het
Csmd3	T	A	15: 47,445,923 (GRCm39)	D3683V	probably damaging	Het
Ctrc	A	G	4: 141,572,354 (GRCm39)	L62P	probably damaging	Het
Cyp3a57	A	T	5: 145,307,867 (GRCm39)	K208*	probably null	Het
Dnaaf2	A	T	12: 69,244,122 (GRCm39)	L313Q	probably damaging	Het
Dtl	A	G	1: 191,278,680 (GRCm39)	L394P	probably benign	Het
Ehhadh	T	C	16: 21,585,305 (GRCm39)	E192G	probably benign	Het
Fads2	T	C	19: 10,059,997 (GRCm39)	I226V	probably benign	Het
Fat2	T	C	11: 55,161,208 (GRCm39)	E3174G	probably damaging	Het
Galnt14	C	T	17: 73,881,826 (GRCm39)	R91Q	probably damaging	Het
Hdhd5	G	T	6: 120,487,252 (GRCm39)	D368E	probably benign	Het
Hk3	T	A	13: 55,158,617 (GRCm39)	I528F	probably damaging	Het
Il10ra	A	C	9: 45,166,951 (GRCm39)	S533R	possibly damaging	Het
Itpr3	G	T	17: 27,305,950 (GRCm39)	K169N	probably benign	Het
Lrrc17	A	G	5: 21,780,264 (GRCm39)	T413A	probably benign	Het
Mcm2	C	T	6: 88,861,053 (GRCm39)	D882N	probably benign	Het
Met	T	C	6: 17,562,197 (GRCm39)	V1186A	probably damaging	Het
Msh5	C	T	17: 35,248,628 (GRCm39)		probably null	Het
Nav3	T	C	10: 109,600,648 (GRCm39)	I1326M	probably damaging	Het
Nek10	A	G	14: 14,850,896 (GRCm38)	I314V	probably benign	Het
Or10g1	A	C	14: 52,648,225 (GRCm39)	F35V	probably damaging	Het
Or8b53	T	A	9: 38,667,412 (GRCm39)	Y143N	probably benign	Het
Pim1	A	G	17: 29,712,720 (GRCm39)	E211G	probably damaging	Het
Plaat1	T	A	16: 29,039,189 (GRCm39)	Y90N	probably benign	Het
Ppp1r12b	A	T	1: 134,704,144 (GRCm39)	D903E	probably benign	Het
Ptpn14	T	C	1: 189,583,229 (GRCm39)	L692P	probably benign	Het
Ptprt	A	G	2: 161,977,138 (GRCm39)	C387R	probably damaging	Het
Qrfprl	A	G	6: 65,418,369 (GRCm39)		probably benign	Het
Scarb1	A	G	5: 125,381,341 (GRCm39)	Y68H	possibly damaging	Het
Shisa6	T	A	11: 66,108,800 (GRCm39)	D359V	probably damaging	Het
Shprh	T	C	10: 11,063,817 (GRCm39)	S1297P	probably damaging	Het
Sik1	T	C	17: 32,069,125 (GRCm39)	D250G	probably damaging	Het
Slamf7	A	G	1: 171,466,635 (GRCm39)	L190S	probably damaging	Het
Slc22a3	G	A	17: 12,652,355 (GRCm39)	P423L	probably damaging	Het
Slc35e2	A	T	4: 155,697,137 (GRCm39)	E217V	probably damaging	Het
Spocd1	A	T	4: 129,850,254 (GRCm39)	N760I	probably damaging	Het
Tas2r136	G	T	6: 132,754,294 (GRCm39)	P278T	possibly damaging	Het
Tchhl1	A	T	3: 93,377,836 (GRCm39)	Q180L	probably benign	Het
Tmem151b	T	A	17: 45,858,010 (GRCm39)	T79S	probably benign	Het
Tomm70a	T	A	16: 56,965,105 (GRCm39)	C430S	probably benign	Het
Trbv16	T	A	6: 41,128,936 (GRCm39)	L40Q	probably damaging	Het
Trmt1l	T	G	1: 151,316,594 (GRCm39)	I32S	probably damaging	Het
Ubr4	A	G	4: 139,152,641 (GRCm39)	T2011A	probably damaging	Het
Urb1	C	T	16: 90,569,652 (GRCm39)	W1358*	probably null	Het
Usp31	T	G	7: 121,248,698 (GRCm39)	H915P	probably benign	Het
Vmn2r10	A	T	5: 109,151,377 (GRCm39)	M79K	possibly damaging	Het
Vmn2r14	A	G	5: 109,369,222 (GRCm39)	I117T	probably benign	Het
Vps13b	A	G	15: 35,869,497 (GRCm39)	H2667R	possibly damaging	Het
Vwa5b1	G	A	4: 138,305,962 (GRCm39)	T912M	possibly damaging	Het
Zfp709	G	A	8: 72,643,363 (GRCm39)	C264Y	probably benign	Het
Zkscan5	A	G	5: 145,156,898 (GRCm39)	I467V	probably benign	Het
Zxdc	A	T	6: 90,347,281 (GRCm39)	D214V	probably damaging	Het

Other mutations in Crtac1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00942:Crtac1	APN	19	42,312,233 (GRCm39)	missense	probably damaging	1.00
IGL01296:Crtac1	APN	19	42,272,652 (GRCm39)	missense	probably damaging	1.00
IGL01991:Crtac1	APN	19	42,402,560 (GRCm39)	missense	possibly damaging	0.96
IGL02811:Crtac1	APN	19	42,322,350 (GRCm39)	missense	probably damaging	1.00
R1957:Crtac1	UTSW	19	42,276,383 (GRCm39)	missense	possibly damaging	0.79
R2046:Crtac1	UTSW	19	42,322,492 (GRCm39)	missense	probably damaging	1.00
R2125:Crtac1	UTSW	19	42,312,171 (GRCm39)	missense	probably damaging	1.00
R2280:Crtac1	UTSW	19	42,272,006 (GRCm39)	missense	unknown
R2281:Crtac1	UTSW	19	42,272,006 (GRCm39)	missense	unknown
R3508:Crtac1	UTSW	19	42,293,180 (GRCm39)	missense	probably benign	0.09
R3923:Crtac1	UTSW	19	42,322,386 (GRCm39)	missense	probably damaging	1.00
R4072:Crtac1	UTSW	19	42,293,146 (GRCm39)	missense	probably damaging	1.00
R4798:Crtac1	UTSW	19	42,312,240 (GRCm39)	missense	possibly damaging	0.93
R4951:Crtac1	UTSW	19	42,402,570 (GRCm39)	missense	probably benign
R4965:Crtac1	UTSW	19	42,307,179 (GRCm39)	missense	probably damaging	1.00
R5190:Crtac1	UTSW	19	42,322,347 (GRCm39)	missense	possibly damaging	0.50
R5579:Crtac1	UTSW	19	42,293,245 (GRCm39)	missense	probably damaging	1.00
R5595:Crtac1	UTSW	19	42,402,390 (GRCm39)	missense	probably benign	0.08
R5739:Crtac1	UTSW	19	42,290,612 (GRCm39)	missense	probably damaging	1.00
R5936:Crtac1	UTSW	19	42,312,276 (GRCm39)	missense	probably damaging	1.00
R6149:Crtac1	UTSW	19	42,272,048 (GRCm39)	missense	unknown
R6193:Crtac1	UTSW	19	42,312,236 (GRCm39)	missense	possibly damaging	0.47
R6858:Crtac1	UTSW	19	42,307,174 (GRCm39)	missense	possibly damaging	0.93
R7246:Crtac1	UTSW	19	42,276,365 (GRCm39)	missense	probably benign
R7726:Crtac1	UTSW	19	42,290,690 (GRCm39)	nonsense	probably null
R7991:Crtac1	UTSW	19	42,322,399 (GRCm39)	missense	probably benign	0.24
R8046:Crtac1	UTSW	19	42,297,492 (GRCm39)	splice site	probably benign
R8071:Crtac1	UTSW	19	42,286,239 (GRCm39)	missense	probably damaging	1.00
R8350:Crtac1	UTSW	19	42,297,625 (GRCm39)	missense	probably damaging	1.00
R8450:Crtac1	UTSW	19	42,297,625 (GRCm39)	missense	probably damaging	1.00
R9756:Crtac1	UTSW	19	42,286,780 (GRCm39)	missense	probably damaging	1.00
R9766:Crtac1	UTSW	19	42,402,557 (GRCm39)	missense	possibly damaging	0.96
X0018:Crtac1	UTSW	19	42,297,553 (GRCm39)	missense	probably damaging	1.00
Z1176:Crtac1	UTSW	19	42,276,365 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- CTTGAGGATAGCAGAGAAACCC -3'
(R):5'- TCTCTGGCCTCAATGGGATCAG -3'

Sequencing Primer
(F):5'- GATAGCAGAGAAACCCAGTGG -3'
(R):5'- GCCTCAATGGGATCAGAGTTATG -3'

Posted On

2017-02-10