Mutagenetix > Incidental Mutation

Incidental Mutation 'R5877:Ralgps1'

455572

Institutional Source

Beutler Lab

Gene Symbol

Ralgps1

Ensembl Gene

ENSMUSG00000038831

Gene Name

Ral GEF with PH domain and SH3 binding motif 1

Synonyms

RALGPS1A, RALGEF2, 5830418G11Rik

MMRRC Submission

044083-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.348) question?

Stock #

R5877 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

33023429-33261498 bp(-) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

A to G at 33133640 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000142084 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000004208] [ENSMUST00000042615] [ENSMUST00000091039] [ENSMUST00000113165] [ENSMUST00000131298] [ENSMUST00000193373]

AlphaFold

A2AR50

Predicted Effect

probably benign
Transcript: ENSMUST00000004208

SMART Domains

Protein: ENSMUSP00000004208
Gene: ENSMUSG00000004105

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
coiled coil region	77	113	N/A	INTRINSIC
coiled coil region	152	180	N/A	INTRINSIC
low complexity region	205	228	N/A	INTRINSIC
FBG	273	488	3.62e-107	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000042615

SMART Domains

Protein: ENSMUSP00000048451
Gene: ENSMUSG00000038831

Domain	Start	End	E-Value	Type
low complexity region	21	26	N/A	INTRINSIC
RasGEF	46	273	4.59e-86	SMART
low complexity region	286	301	N/A	INTRINSIC
PH	372	485	1.87e-13	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000091039

SMART Domains

Protein: ENSMUSP00000088563
Gene: ENSMUSG00000038831

Domain	Start	End	E-Value	Type
low complexity region	21	26	N/A	INTRINSIC
RasGEF	46	290	7.54e-105	SMART
low complexity region	303	318	N/A	INTRINSIC
low complexity region	397	411	N/A	INTRINSIC
PH	460	573	1.87e-13	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000113165

SMART Domains

Protein: ENSMUSP00000108790
Gene: ENSMUSG00000038831

Domain	Start	End	E-Value	Type
low complexity region	21	26	N/A	INTRINSIC
RasGEF	46	290	7.54e-105	SMART
low complexity region	303	318	N/A	INTRINSIC
low complexity region	397	411	N/A	INTRINSIC
PH	459	572	1.87e-13	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000131298

SMART Domains

Protein: ENSMUSP00000118363
Gene: ENSMUSG00000038831

Domain	Start	End	E-Value	Type
low complexity region	21	26	N/A	INTRINSIC
RasGEF	46	290	7.54e-105	SMART
low complexity region	303	318	N/A	INTRINSIC
PH	390	503	1.87e-13	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143252

Predicted Effect

probably benign
Transcript: ENSMUST00000193373

SMART Domains

Protein: ENSMUSP00000142084
Gene: ENSMUSG00000004105

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Pfam:Fibrinogen_C	49	112	4.2e-21	PFAM

Meta Mutation Damage Score

0.0846

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.2%
20x: 94.7%

Validation Efficiency

97% (68/70)

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam6b	A	T	12: 113,453,822 (GRCm39)	H213L	probably damaging	Het
Alk	A	G	17: 72,274,521 (GRCm39)	W597R	probably damaging	Het
Ark2n	G	T	18: 77,730,902 (GRCm39)		probably null	Het
Ash1l	G	A	3: 88,888,891 (GRCm39)	V257I	probably benign	Het
Atp9b	C	T	18: 80,796,004 (GRCm39)	V957I	probably benign	Het
Birc2	A	C	9: 7,849,347 (GRCm39)	C576G	probably damaging	Het
Brca2	T	C	5: 150,466,686 (GRCm39)	M2150T	possibly damaging	Het
C3ar1	T	G	6: 122,827,581 (GRCm39)	D212A	probably benign	Het
Cacna1s	T	C	1: 136,028,405 (GRCm39)	F914S	probably damaging	Het
Camk1d	T	C	2: 5,570,476 (GRCm39)	I62V	probably benign	Het
Caskin1	T	C	17: 24,724,239 (GRCm39)	M1009T	possibly damaging	Het
Casp2	A	G	6: 42,253,571 (GRCm39)		probably benign	Het
Cd2bp2	T	A	7: 126,793,971 (GRCm39)	Y106F	probably damaging	Het
Celsr3	G	A	9: 108,722,926 (GRCm39)	C2763Y	probably damaging	Het
Cyp2g1	T	G	7: 26,516,065 (GRCm39)	L310V	possibly damaging	Het
Dusp22	G	A	13: 30,891,944 (GRCm39)	V99M	probably damaging	Het
Elp1	A	T	4: 56,787,807 (GRCm39)	W375R	probably damaging	Het
Fam131b	G	A	6: 42,297,913 (GRCm39)	S92L	probably benign	Het
Fbxw10	A	T	11: 62,748,542 (GRCm39)	N390Y	probably damaging	Het
Flg2	A	T	3: 93,110,756 (GRCm39)	H928L	unknown	Het
Gapdhs	T	C	7: 30,431,772 (GRCm39)	T280A	probably damaging	Het
Hdac11	A	G	6: 91,134,524 (GRCm39)	K50E	probably damaging	Het
Hif3a	G	T	7: 16,785,071 (GRCm39)	A181E	probably damaging	Het
Itgb8	A	G	12: 119,166,271 (GRCm39)	S87P	probably benign	Het
Klhl12	T	A	1: 134,411,558 (GRCm39)	Y302*	probably null	Het
Lhx1	C	A	11: 84,413,065 (GRCm39)	D30Y	probably damaging	Het
Mrpl40	A	G	16: 18,691,135 (GRCm39)	Y148H	probably damaging	Het
Myh13	A	T	11: 67,244,484 (GRCm39)	H1007L	possibly damaging	Het
Nhlrc2	T	C	19: 56,559,016 (GRCm39)	I167T	probably damaging	Het
Nxpe3	A	T	16: 55,686,564 (GRCm39)	I148K	probably damaging	Het
Odf2l	A	G	3: 144,834,771 (GRCm39)		probably null	Het
Otud7b	C	T	3: 96,059,277 (GRCm39)	R347*	probably null	Het
P3h4	G	T	11: 100,304,843 (GRCm39)	H181Q	probably benign	Het
P4htm	T	A	9: 108,460,932 (GRCm39)	Y180F	possibly damaging	Het
Pcna-ps2	A	G	19: 9,261,463 (GRCm39)	I241V	probably benign	Het
Pcnx2	T	C	8: 126,480,467 (GRCm39)	S1947G	probably damaging	Het
Piezo2	T	C	18: 63,247,005 (GRCm39)	I336V	probably benign	Het
Plcd1	T	C	9: 118,905,240 (GRCm39)	D157G	probably damaging	Het
Plekhm2	A	C	4: 141,367,004 (GRCm39)	I212S	probably damaging	Het
Pmvk	G	T	3: 89,371,676 (GRCm39)	C57F	probably benign	Het
Pole	T	C	5: 110,480,329 (GRCm39)	S91P	probably benign	Het
Ppargc1b	C	G	18: 61,442,164 (GRCm39)	D591H	probably damaging	Het
Ppp4r3b	A	T	11: 29,159,356 (GRCm39)	D570V	probably damaging	Het
Pxdn	T	A	12: 30,053,045 (GRCm39)	I1074N	probably damaging	Het
Ralgapa2	A	T	2: 146,230,489 (GRCm39)	D1025E	probably damaging	Het
Rasal1	C	T	5: 120,817,135 (GRCm39)		probably benign	Het
Rps2	A	T	17: 24,939,890 (GRCm39)		probably benign	Het
Scn7a	G	C	2: 66,530,217 (GRCm39)	Y709*	probably null	Het
Skint1	T	A	4: 111,878,720 (GRCm39)	C217*	probably null	Het
Slc50a1	T	C	3: 89,176,460 (GRCm39)	Y82C	probably damaging	Het
Slc9a4	T	C	1: 40,651,423 (GRCm39)	V567A	probably benign	Het
Snx27	A	T	3: 94,410,270 (GRCm39)	W469R	probably damaging	Het
Sos2	A	G	12: 69,643,569 (GRCm39)	L937P	probably damaging	Het
Ssh1	T	C	5: 114,081,181 (GRCm39)	T728A	probably benign	Het
Tnfrsf8	G	A	4: 145,019,257 (GRCm39)	R193C	probably benign	Het
Tut4	T	C	4: 108,370,120 (GRCm39)	V673A	probably damaging	Het
Usp33	T	A	3: 152,085,113 (GRCm39)	M583K	possibly damaging	Het
Usp33	G	A	3: 152,085,233 (GRCm39)	C623Y	probably damaging	Het
Wdfy3	T	C	5: 102,017,855 (GRCm39)	I2562V	probably damaging	Het
Wnk2	T	C	13: 49,220,782 (GRCm39)	D1175G	probably damaging	Het
Zfp341	G	A	2: 154,474,209 (GRCm39)	E338K	probably damaging	Het
Zfp398	A	G	6: 47,817,638 (GRCm39)		probably benign	Het
Zp2	T	A	7: 119,732,562 (GRCm39)	K661N	probably null	Het

Other mutations in Ralgps1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00162:Ralgps1	APN	2	33,027,694 (GRCm39)	makesense	probably null
IGL00780:Ralgps1	APN	2	33,163,639 (GRCm39)	missense	probably damaging	1.00
IGL00951:Ralgps1	APN	2	33,163,614 (GRCm39)	missense	probably damaging	1.00
IGL01358:Ralgps1	APN	2	33,033,061 (GRCm39)	missense	possibly damaging	0.62
IGL02346:Ralgps1	APN	2	33,047,782 (GRCm39)	critical splice donor site	probably null
IGL02481:Ralgps1	APN	2	33,230,741 (GRCm39)	missense	probably benign	0.04
IGL03281:Ralgps1	APN	2	33,062,428 (GRCm39)	critical splice donor site	probably null
IGL03284:Ralgps1	APN	2	33,036,577 (GRCm39)	splice site	probably benign
IGL03377:Ralgps1	APN	2	33,062,473 (GRCm39)	missense	probably damaging	1.00
R0007:Ralgps1	UTSW	2	33,033,401 (GRCm39)	missense	probably damaging	0.97
R0029:Ralgps1	UTSW	2	33,031,031 (GRCm39)	missense	probably benign
R0309:Ralgps1	UTSW	2	33,047,935 (GRCm39)	missense	probably benign
R0320:Ralgps1	UTSW	2	33,031,027 (GRCm39)	missense	possibly damaging	0.59
R0622:Ralgps1	UTSW	2	33,064,459 (GRCm39)	nonsense	probably null
R1277:Ralgps1	UTSW	2	33,064,437 (GRCm39)	missense	possibly damaging	0.51
R1797:Ralgps1	UTSW	2	33,230,723 (GRCm39)	critical splice donor site	probably null
R2921:Ralgps1	UTSW	2	33,033,082 (GRCm39)	missense	probably damaging	0.99
R3123:Ralgps1	UTSW	2	33,048,968 (GRCm39)	missense	possibly damaging	0.81
R3124:Ralgps1	UTSW	2	33,048,968 (GRCm39)	missense	possibly damaging	0.81
R4741:Ralgps1	UTSW	2	33,226,599 (GRCm39)	missense	probably benign	0.00
R4894:Ralgps1	UTSW	2	33,033,115 (GRCm39)	missense	possibly damaging	0.71
R5148:Ralgps1	UTSW	2	33,048,999 (GRCm39)	missense	probably damaging	1.00
R5255:Ralgps1	UTSW	2	33,166,171 (GRCm39)	missense	probably damaging	1.00
R6330:Ralgps1	UTSW	2	33,064,455 (GRCm39)	missense	probably damaging	1.00
R6908:Ralgps1	UTSW	2	33,033,112 (GRCm39)	missense	probably benign	0.17
R7252:Ralgps1	UTSW	2	33,058,200 (GRCm39)	missense	probably benign	0.12
R7299:Ralgps1	UTSW	2	33,047,885 (GRCm39)	missense	probably benign
R7366:Ralgps1	UTSW	2	33,214,700 (GRCm39)	missense	possibly damaging	0.88
R7973:Ralgps1	UTSW	2	33,036,651 (GRCm39)	missense	probably damaging	1.00
R8422:Ralgps1	UTSW	2	33,062,442 (GRCm39)	missense	possibly damaging	0.81
R8513:Ralgps1	UTSW	2	33,226,626 (GRCm39)	missense	probably damaging	1.00
R8710:Ralgps1	UTSW	2	33,035,433 (GRCm39)	missense	probably damaging	0.98
R8733:Ralgps1	UTSW	2	33,174,836 (GRCm39)	critical splice donor site	probably null
R8841:Ralgps1	UTSW	2	33,045,329 (GRCm39)	missense	probably benign
R9261:Ralgps1	UTSW	2	33,226,571 (GRCm39)	missense	probably damaging	1.00
R9728:Ralgps1	UTSW	2	33,163,626 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AGTGACCACATCTTCCTGC -3'
(R):5'- GTCGGAAACTGGCATACTCAG -3'

Sequencing Primer
(F):5'- CCTGCCTTTGAGAAGTTACAGAATCC -3'
(R):5'- TGGCATACTCAGCAAAGACTTTACG -3'

Posted On

2017-02-10