Incidental Mutation 'R0561:Dsg1c'
| ID |
45903 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Dsg1c
|
| Ensembl Gene |
ENSMUSG00000034774 |
| Gene Name |
desmoglein 1 gamma |
| Synonyms |
Dsg6 |
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R0561 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
18 |
| Chromosomal Location |
20380397-20418088 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 20407832 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Isoleucine to Leucine
at position 393
(I393L)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000054799
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000054128]
|
| AlphaFold |
Q7TSF0 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000054128
AA Change: I393L
PolyPhen 2
Score 0.040 (Sensitivity: 0.94; Specificity: 0.83)
|
| SMART Domains |
Protein: ENSMUSP00000054799
Gene: ENSMUSG00000034774
AA Change: I393L
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
23 |
N/A |
INTRINSIC |
|
CA
|
70 |
155 |
1.7e-16 |
SMART |
|
CA
|
179 |
267 |
5.2e-24 |
SMART |
|
CA
|
290 |
384 |
4.5e-8 |
SMART |
|
Blast:CA
|
407 |
488 |
8e-28 |
BLAST |
|
low complexity region
|
491 |
500 |
N/A |
INTRINSIC |
|
low complexity region
|
528 |
539 |
N/A |
INTRINSIC |
|
low complexity region
|
545 |
553 |
N/A |
INTRINSIC |
|
Pfam:Cadherin_C
|
611 |
732 |
5.2e-8 |
PFAM |
|
low complexity region
|
737 |
750 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.6%
- 10x: 96.9%
- 20x: 94.6%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: This gene encodes a member of the cadherin family of proteins that forms an integral transmembrane component of desmosomes, the multiprotein complexes involved in cell adhesion, organization of the cytoskeleton, cell sorting and cell signaling. The encoded preproprotein undergoes proteolytic processing to generate a mature, functional protein. This gene is located in a cluster of desmosomal cadherin genes on chromosome 18. [provided by RefSeq, Jan 2016]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 50 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adck1 |
A |
G |
12: 88,335,204 (GRCm39) |
D30G |
possibly damaging |
Het |
| Apc |
A |
T |
18: 34,446,356 (GRCm39) |
H1050L |
possibly damaging |
Het |
| Armc2 |
A |
G |
10: 41,869,188 (GRCm39) |
V166A |
probably benign |
Het |
| Atp6v1b1 |
A |
T |
6: 83,730,793 (GRCm39) |
I173F |
probably damaging |
Het |
| Bpifb4 |
A |
G |
2: 153,786,742 (GRCm39) |
D298G |
probably damaging |
Het |
| C4b |
T |
A |
17: 34,953,391 (GRCm39) |
S1031C |
probably damaging |
Het |
| Calcr |
A |
G |
6: 3,692,630 (GRCm39) |
I408T |
probably damaging |
Het |
| Catsperg1 |
T |
C |
7: 28,881,737 (GRCm39) |
N1009S |
probably damaging |
Het |
| Ces2a |
T |
C |
8: 105,464,165 (GRCm39) |
S266P |
probably benign |
Het |
| Chrna1 |
A |
G |
2: 73,396,596 (GRCm39) |
V433A |
possibly damaging |
Het |
| Ctnnb1 |
G |
A |
9: 120,780,788 (GRCm39) |
V291M |
probably damaging |
Het |
| Dcbld1 |
T |
C |
10: 52,138,032 (GRCm39) |
Y99H |
probably benign |
Het |
| Ddx60 |
A |
T |
8: 62,470,828 (GRCm39) |
H1440L |
possibly damaging |
Het |
| Eif5 |
G |
T |
12: 111,506,950 (GRCm39) |
R128L |
probably benign |
Het |
| Ercc3 |
A |
G |
18: 32,378,592 (GRCm39) |
D191G |
possibly damaging |
Het |
| Gp1ba |
A |
T |
11: 70,530,416 (GRCm39) |
|
probably benign |
Het |
| Krt24 |
C |
T |
11: 99,175,439 (GRCm39) |
E199K |
probably damaging |
Het |
| Lrif1 |
G |
T |
3: 106,639,481 (GRCm39) |
A164S |
probably damaging |
Het |
| Map2 |
A |
G |
1: 66,464,656 (GRCm39) |
D1682G |
probably damaging |
Het |
| Megf8 |
C |
T |
7: 25,028,257 (GRCm39) |
P274S |
probably benign |
Het |
| Mslnl |
C |
T |
17: 25,962,177 (GRCm39) |
Q192* |
probably null |
Het |
| Nfkb2 |
T |
C |
19: 46,298,301 (GRCm39) |
V535A |
possibly damaging |
Het |
| Or10q1 |
A |
T |
19: 13,726,662 (GRCm39) |
Y64F |
probably damaging |
Het |
| Or4a66 |
A |
G |
2: 88,530,914 (GRCm39) |
I253T |
possibly damaging |
Het |
| Or4c11 |
T |
A |
2: 88,695,024 (GRCm39) |
V25E |
possibly damaging |
Het |
| Or7a37 |
T |
A |
10: 78,805,729 (GRCm39) |
L82* |
probably null |
Het |
| Or8b37 |
G |
T |
9: 37,959,123 (GRCm39) |
V202L |
probably benign |
Het |
| Or8g22 |
C |
T |
9: 38,958,669 (GRCm39) |
M15I |
probably damaging |
Het |
| Pag1 |
T |
A |
3: 9,764,481 (GRCm39) |
Y224F |
probably damaging |
Het |
| Pbrm1 |
A |
C |
14: 30,757,948 (GRCm39) |
I193L |
probably benign |
Het |
| Phrf1 |
T |
C |
7: 140,834,876 (GRCm39) |
V17A |
probably benign |
Het |
| Plekhg2 |
T |
G |
7: 28,069,908 (GRCm39) |
T42P |
probably benign |
Het |
| Pmp22 |
T |
A |
11: 63,025,250 (GRCm39) |
W28R |
probably damaging |
Het |
| Ppp1r13b |
A |
T |
12: 111,832,880 (GRCm39) |
H82Q |
probably damaging |
Het |
| Rgs8 |
T |
C |
1: 153,541,668 (GRCm39) |
|
probably null |
Het |
| Rtl1 |
A |
G |
12: 109,560,363 (GRCm39) |
V492A |
probably damaging |
Het |
| Slc22a27 |
A |
G |
19: 7,857,527 (GRCm39) |
|
probably null |
Het |
| Slx4ip |
A |
G |
2: 136,908,090 (GRCm39) |
E79G |
probably null |
Het |
| Syde1 |
C |
T |
10: 78,425,210 (GRCm39) |
R267H |
probably damaging |
Het |
| Tas2r114 |
A |
G |
6: 131,666,758 (GRCm39) |
I90T |
probably benign |
Het |
| Tjp3 |
C |
T |
10: 81,109,674 (GRCm39) |
G843D |
probably benign |
Het |
| Tln1 |
A |
T |
4: 43,550,304 (GRCm39) |
M453K |
possibly damaging |
Het |
| Ttc39a |
A |
T |
4: 109,297,799 (GRCm39) |
Y408F |
probably damaging |
Het |
| Usp39 |
T |
G |
6: 72,313,368 (GRCm39) |
Q274P |
probably damaging |
Het |
| Uvrag |
C |
T |
7: 98,537,768 (GRCm39) |
V476I |
probably damaging |
Het |
| Vcan |
T |
A |
13: 89,860,372 (GRCm39) |
T332S |
probably damaging |
Het |
| Vcan |
T |
A |
13: 89,879,583 (GRCm39) |
H22L |
possibly damaging |
Het |
| Wls |
A |
G |
3: 159,578,705 (GRCm39) |
D89G |
probably benign |
Het |
| Zfhx2 |
A |
T |
14: 55,303,346 (GRCm39) |
V1546E |
probably benign |
Het |
| Zfp457 |
T |
A |
13: 67,442,134 (GRCm39) |
H147L |
probably damaging |
Het |
|
| Other mutations in Dsg1c |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00567:Dsg1c
|
APN |
18 |
20,407,733 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL00596:Dsg1c
|
APN |
18 |
20,414,899 (GRCm39) |
splice site |
probably benign |
|
|
IGL01412:Dsg1c
|
APN |
18 |
20,380,518 (GRCm39) |
missense |
probably benign |
|
|
IGL02037:Dsg1c
|
APN |
18 |
20,410,007 (GRCm39) |
missense |
probably benign |
0.02 |
|
IGL02247:Dsg1c
|
APN |
18 |
20,397,373 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02386:Dsg1c
|
APN |
18 |
20,410,056 (GRCm39) |
missense |
probably benign |
|
|
IGL02408:Dsg1c
|
APN |
18 |
20,407,776 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02519:Dsg1c
|
APN |
18 |
20,416,790 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02591:Dsg1c
|
APN |
18 |
20,408,249 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02730:Dsg1c
|
APN |
18 |
20,407,887 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02836:Dsg1c
|
APN |
18 |
20,400,986 (GRCm39) |
missense |
probably benign |
0.07 |
|
IGL03335:Dsg1c
|
APN |
18 |
20,416,754 (GRCm39) |
missense |
probably benign |
0.01 |
|
Nancy
|
UTSW |
18 |
20,416,171 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0385:Dsg1c
|
UTSW |
18 |
20,416,711 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0570:Dsg1c
|
UTSW |
18 |
20,403,435 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0573:Dsg1c
|
UTSW |
18 |
20,412,298 (GRCm39) |
missense |
probably benign |
0.02 |
|
R0621:Dsg1c
|
UTSW |
18 |
20,412,752 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
R0632:Dsg1c
|
UTSW |
18 |
20,405,403 (GRCm39) |
splice site |
probably benign |
|
|
R1183:Dsg1c
|
UTSW |
18 |
20,416,255 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1529:Dsg1c
|
UTSW |
18 |
20,415,080 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1596:Dsg1c
|
UTSW |
18 |
20,415,104 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1619:Dsg1c
|
UTSW |
18 |
20,397,899 (GRCm39) |
missense |
probably benign |
0.36 |
|
R1623:Dsg1c
|
UTSW |
18 |
20,408,234 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1844:Dsg1c
|
UTSW |
18 |
20,416,096 (GRCm39) |
splice site |
probably null |
|
|
R1881:Dsg1c
|
UTSW |
18 |
20,405,597 (GRCm39) |
splice site |
probably benign |
|
|
R2017:Dsg1c
|
UTSW |
18 |
20,399,253 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R2072:Dsg1c
|
UTSW |
18 |
20,408,309 (GRCm39) |
missense |
probably benign |
0.09 |
|
R2319:Dsg1c
|
UTSW |
18 |
20,408,235 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2340:Dsg1c
|
UTSW |
18 |
20,400,945 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3403:Dsg1c
|
UTSW |
18 |
20,403,407 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3407:Dsg1c
|
UTSW |
18 |
20,415,115 (GRCm39) |
critical splice donor site |
probably null |
|
|
R3874:Dsg1c
|
UTSW |
18 |
20,410,109 (GRCm39) |
missense |
probably benign |
0.02 |
|
R3910:Dsg1c
|
UTSW |
18 |
20,399,253 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R4535:Dsg1c
|
UTSW |
18 |
20,408,322 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4739:Dsg1c
|
UTSW |
18 |
20,408,246 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R5038:Dsg1c
|
UTSW |
18 |
20,397,901 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5165:Dsg1c
|
UTSW |
18 |
20,410,080 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5210:Dsg1c
|
UTSW |
18 |
20,407,758 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R5253:Dsg1c
|
UTSW |
18 |
20,405,436 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5327:Dsg1c
|
UTSW |
18 |
20,400,994 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R5361:Dsg1c
|
UTSW |
18 |
20,416,703 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R5475:Dsg1c
|
UTSW |
18 |
20,415,088 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5512:Dsg1c
|
UTSW |
18 |
20,405,568 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5681:Dsg1c
|
UTSW |
18 |
20,416,270 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5710:Dsg1c
|
UTSW |
18 |
20,405,408 (GRCm39) |
missense |
probably benign |
0.06 |
|
R5889:Dsg1c
|
UTSW |
18 |
20,416,658 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R6513:Dsg1c
|
UTSW |
18 |
20,407,687 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6596:Dsg1c
|
UTSW |
18 |
20,403,581 (GRCm39) |
splice site |
probably null |
|
|
R6941:Dsg1c
|
UTSW |
18 |
20,400,980 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R7041:Dsg1c
|
UTSW |
18 |
20,399,201 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7061:Dsg1c
|
UTSW |
18 |
20,410,066 (GRCm39) |
missense |
probably benign |
|
|
R7240:Dsg1c
|
UTSW |
18 |
20,416,166 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8048:Dsg1c
|
UTSW |
18 |
20,407,824 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8092:Dsg1c
|
UTSW |
18 |
20,415,029 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8103:Dsg1c
|
UTSW |
18 |
20,416,171 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8117:Dsg1c
|
UTSW |
18 |
20,410,016 (GRCm39) |
missense |
probably benign |
|
|
R8192:Dsg1c
|
UTSW |
18 |
20,399,255 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8801:Dsg1c
|
UTSW |
18 |
20,410,022 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9059:Dsg1c
|
UTSW |
18 |
20,408,306 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9152:Dsg1c
|
UTSW |
18 |
20,416,329 (GRCm39) |
missense |
probably benign |
0.06 |
|
R9292:Dsg1c
|
UTSW |
18 |
20,416,775 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9469:Dsg1c
|
UTSW |
18 |
20,400,947 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9596:Dsg1c
|
UTSW |
18 |
20,416,361 (GRCm39) |
missense |
probably benign |
0.17 |
|
R9619:Dsg1c
|
UTSW |
18 |
20,416,499 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9628:Dsg1c
|
UTSW |
18 |
20,397,373 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9710:Dsg1c
|
UTSW |
18 |
20,410,044 (GRCm39) |
missense |
probably benign |
|
|
X0026:Dsg1c
|
UTSW |
18 |
20,416,315 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Dsg1c
|
UTSW |
18 |
20,416,630 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:Dsg1c
|
UTSW |
18 |
20,398,006 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GCCCCTAGATTATGAAGCCGTGAAG -3'
(R):5'- TGAGTCAACAACCAGCAGGTTCTC -3'
Sequencing Primer
(F):5'- TTATGAAGCCGTGAAGAATCTACAG -3'
(R):5'- ATTAAAGCTGTCTTTCGAGCG -3'
|
| Posted On |
2013-06-11 |
Incidental Mutation