Incidental Mutation 'R0563:Or1j18'
| ID |
45995 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or1j18
|
| Ensembl Gene |
ENSMUSG00000111863 |
| Gene Name |
olfactory receptor family 1 subfamily J member 18 |
| Synonyms |
MOR136-9, Olfr347, GA_x6K02T2NLDC-33428755-33429693 |
| MMRRC Submission |
038754-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.193)
|
| Stock # |
R0563 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
2 |
| Chromosomal Location |
36624335-36625273 bp(+) (GRCm39) |
| Type of Mutation |
nonsense |
| DNA Base Change (assembly) |
A to T
at 36625013 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Lysine to Stop codon
at position 227
(K227*)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000151158
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000078761]
[ENSMUST00000216882]
|
| AlphaFold |
Q8VGK2 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000078761
AA Change: K227*
|
| SMART Domains |
Protein: ENSMUSP00000077819
Gene: ENSMUSG00000111863
AA Change: K227*
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
31 |
308 |
4.2e-58 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
35 |
305 |
1.3e-5 |
PFAM |
|
Pfam:7tm_1
|
41 |
290 |
1.9e-23 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000216882
AA Change: K227*
|
| Meta Mutation Damage Score |
0.9587 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.4%
- 10x: 96.6%
- 20x: 93.3%
|
| Validation Efficiency |
98% (52/53) |
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 53 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adgrb3 |
G |
T |
1: 25,586,635 (GRCm39) |
P146T |
probably damaging |
Het |
| Ambn |
A |
C |
5: 88,611,309 (GRCm39) |
N163T |
probably benign |
Het |
| Ankrd36 |
A |
T |
11: 5,579,322 (GRCm39) |
E870D |
probably benign |
Het |
| Cdc123 |
T |
C |
2: 5,803,212 (GRCm39) |
N269S |
probably benign |
Het |
| Cdc7 |
A |
T |
5: 107,120,776 (GRCm39) |
|
probably benign |
Het |
| Cdh2 |
A |
T |
18: 16,762,738 (GRCm39) |
V402D |
possibly damaging |
Het |
| Cwc27 |
C |
A |
13: 104,797,865 (GRCm39) |
E365* |
probably null |
Het |
| Dcdc5 |
G |
A |
2: 106,180,035 (GRCm39) |
|
noncoding transcript |
Het |
| Eif4g3 |
T |
C |
4: 137,903,151 (GRCm39) |
|
probably benign |
Het |
| Elovl4 |
C |
T |
9: 83,667,087 (GRCm39) |
|
probably null |
Het |
| Fhl5 |
T |
G |
4: 25,213,610 (GRCm39) |
I109L |
probably damaging |
Het |
| Gm16181 |
A |
G |
17: 35,442,872 (GRCm39) |
|
probably benign |
Het |
| Gna14 |
A |
G |
19: 16,585,483 (GRCm39) |
Y287C |
probably benign |
Het |
| Greb1 |
A |
T |
12: 16,730,268 (GRCm39) |
C1720S |
probably benign |
Het |
| Gypa |
T |
A |
8: 81,236,089 (GRCm39) |
S165T |
probably benign |
Het |
| Hephl1 |
T |
C |
9: 14,993,241 (GRCm39) |
D531G |
probably damaging |
Het |
| Hsf2bp |
A |
T |
17: 32,226,692 (GRCm39) |
L221Q |
probably damaging |
Het |
| Itsn1 |
A |
G |
16: 91,617,684 (GRCm39) |
|
probably benign |
Het |
| Kif7 |
T |
C |
7: 79,352,020 (GRCm39) |
E914G |
probably benign |
Het |
| Lrp1b |
T |
C |
2: 40,640,926 (GRCm39) |
D3506G |
probably benign |
Het |
| Lrrc28 |
T |
C |
7: 67,195,135 (GRCm39) |
N225S |
probably damaging |
Het |
| Lysmd4 |
T |
A |
7: 66,875,925 (GRCm39) |
L196Q |
probably benign |
Het |
| Megf8 |
T |
C |
7: 25,041,820 (GRCm39) |
C1245R |
probably damaging |
Het |
| Mgat4f |
A |
G |
1: 134,317,777 (GRCm39) |
K183R |
probably benign |
Het |
| Mib2 |
C |
T |
4: 155,743,917 (GRCm39) |
G42S |
probably damaging |
Het |
| Mindy2 |
T |
A |
9: 70,538,334 (GRCm39) |
I334L |
possibly damaging |
Het |
| Mrm1 |
A |
G |
11: 84,705,539 (GRCm39) |
S287P |
probably damaging |
Het |
| Ncor1 |
A |
G |
11: 62,234,056 (GRCm39) |
I382T |
probably damaging |
Het |
| Nectin1 |
A |
G |
9: 43,702,342 (GRCm39) |
T30A |
probably benign |
Het |
| Nelfe |
A |
G |
17: 35,073,215 (GRCm39) |
E250G |
possibly damaging |
Het |
| Nsd1 |
C |
A |
13: 55,394,391 (GRCm39) |
T767K |
possibly damaging |
Het |
| Or1i2 |
G |
A |
10: 78,448,467 (GRCm39) |
P3S |
probably benign |
Het |
| Or4e5 |
T |
A |
14: 52,727,714 (GRCm39) |
K236* |
probably null |
Het |
| Or5b111 |
A |
G |
19: 13,291,112 (GRCm39) |
I179T |
probably benign |
Het |
| Pcnx1 |
A |
G |
12: 81,964,718 (GRCm39) |
D295G |
probably damaging |
Het |
| Pex14 |
A |
G |
4: 149,046,003 (GRCm39) |
V309A |
possibly damaging |
Het |
| Phf14 |
C |
T |
6: 11,933,600 (GRCm39) |
|
probably benign |
Het |
| Pnpla6 |
A |
G |
8: 3,573,333 (GRCm39) |
D399G |
possibly damaging |
Het |
| Prim1 |
A |
G |
10: 127,862,423 (GRCm39) |
D340G |
probably damaging |
Het |
| Rb1 |
A |
G |
14: 73,454,207 (GRCm39) |
F564L |
probably damaging |
Het |
| Rcc1l |
G |
C |
5: 134,205,394 (GRCm39) |
R54G |
probably benign |
Het |
| Rnf151 |
G |
A |
17: 24,936,430 (GRCm39) |
|
probably benign |
Het |
| Rnf40 |
T |
C |
7: 127,192,048 (GRCm39) |
L398P |
probably damaging |
Het |
| Robo1 |
C |
T |
16: 72,769,174 (GRCm39) |
T531I |
probably benign |
Het |
| Rps6ka2 |
A |
T |
17: 7,521,836 (GRCm39) |
I198F |
probably damaging |
Het |
| Sgk2 |
T |
C |
2: 162,846,164 (GRCm39) |
L264P |
probably damaging |
Het |
| Slc26a6 |
T |
A |
9: 108,734,869 (GRCm39) |
I281N |
probably damaging |
Het |
| Tnxb |
A |
T |
17: 34,935,921 (GRCm39) |
K2657N |
probably benign |
Het |
| Tor1aip1 |
G |
A |
1: 155,911,554 (GRCm39) |
T143M |
probably damaging |
Het |
| Tpr |
A |
G |
1: 150,284,609 (GRCm39) |
D358G |
probably benign |
Het |
| Vstm2b |
T |
C |
7: 40,551,899 (GRCm39) |
S76P |
probably damaging |
Het |
| Wdr33 |
A |
G |
18: 32,019,792 (GRCm39) |
K488R |
possibly damaging |
Het |
| Ythdc2 |
T |
A |
18: 44,997,915 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Or1j18 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02190:Or1j18
|
APN |
2 |
36,624,591 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL02417:Or1j18
|
APN |
2 |
36,624,356 (GRCm39) |
missense |
probably benign |
0.13 |
|
IGL02488:Or1j18
|
APN |
2 |
36,624,362 (GRCm39) |
missense |
probably benign |
0.36 |
|
IGL02878:Or1j18
|
APN |
2 |
36,624,489 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03354:Or1j18
|
APN |
2 |
36,624,525 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
IGL03354:Or1j18
|
APN |
2 |
36,624,524 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
PIT4403001:Or1j18
|
UTSW |
2 |
36,624,930 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0091:Or1j18
|
UTSW |
2 |
36,624,917 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0107:Or1j18
|
UTSW |
2 |
36,624,730 (GRCm39) |
nonsense |
probably null |
|
|
R0457:Or1j18
|
UTSW |
2 |
36,624,545 (GRCm39) |
missense |
probably benign |
0.18 |
|
R1205:Or1j18
|
UTSW |
2 |
36,624,767 (GRCm39) |
missense |
probably benign |
0.16 |
|
R1599:Or1j18
|
UTSW |
2 |
36,625,001 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1668:Or1j18
|
UTSW |
2 |
36,625,204 (GRCm39) |
nonsense |
probably null |
|
|
R1845:Or1j18
|
UTSW |
2 |
36,624,854 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1856:Or1j18
|
UTSW |
2 |
36,624,357 (GRCm39) |
missense |
probably benign |
|
|
R2165:Or1j18
|
UTSW |
2 |
36,624,713 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R4399:Or1j18
|
UTSW |
2 |
36,625,242 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4657:Or1j18
|
UTSW |
2 |
36,624,415 (GRCm39) |
nonsense |
probably null |
|
|
R4684:Or1j18
|
UTSW |
2 |
36,624,686 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4767:Or1j18
|
UTSW |
2 |
36,624,335 (GRCm39) |
start codon destroyed |
probably benign |
0.02 |
|
R4988:Or1j18
|
UTSW |
2 |
36,624,996 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R5058:Or1j18
|
UTSW |
2 |
36,625,011 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
R5103:Or1j18
|
UTSW |
2 |
36,624,680 (GRCm39) |
missense |
probably benign |
0.23 |
|
R5140:Or1j18
|
UTSW |
2 |
36,624,510 (GRCm39) |
missense |
possibly damaging |
0.59 |
|
R5587:Or1j18
|
UTSW |
2 |
36,624,633 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5591:Or1j18
|
UTSW |
2 |
36,625,244 (GRCm39) |
missense |
probably benign |
|
|
R6738:Or1j18
|
UTSW |
2 |
36,624,444 (GRCm39) |
missense |
probably benign |
0.26 |
|
R7097:Or1j18
|
UTSW |
2 |
36,624,436 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7122:Or1j18
|
UTSW |
2 |
36,624,436 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7330:Or1j18
|
UTSW |
2 |
36,625,057 (GRCm39) |
nonsense |
probably null |
|
|
R7485:Or1j18
|
UTSW |
2 |
36,624,650 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7792:Or1j18
|
UTSW |
2 |
36,624,342 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7812:Or1j18
|
UTSW |
2 |
36,624,737 (GRCm39) |
missense |
probably benign |
|
|
R8303:Or1j18
|
UTSW |
2 |
36,624,467 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8824:Or1j18
|
UTSW |
2 |
36,625,203 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- TGGACCTTATCCACTGCCAATGC -3'
(R):5'- TGTGACCACATTGTACATCACAGCC -3'
Sequencing Primer
(F):5'- ACTGCCAATGCCCTTGTG -3'
(R):5'- CACAATGGCATCCTGTACATTAG -3'
|
| Posted On |
2013-06-11 |
Incidental Mutation