Incidental Mutation 'R5944:Stat3'
| ID |
460488 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Stat3
|
| Ensembl Gene |
ENSMUSG00000004040 |
| Gene Name |
signal transducer and activator of transcription 3 |
| Synonyms |
1110034C02Rik, Aprf |
| MMRRC Submission |
044136-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R5944 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
11 |
| Chromosomal Location |
100777632-100830447 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to T
at 100785931 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Alanine to Threonine
at position 449
(A449T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000121677
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000092671]
[ENSMUST00000103114]
[ENSMUST00000127638]
[ENSMUST00000138438]
|
| AlphaFold |
P42227 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000092671
AA Change: A475T
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000090342
Gene: ENSMUSG00000004040
AA Change: A475T
| Domain | Start | End | E-Value | Type |
|---|
|
STAT_int
|
2 |
122 |
3.03e-60 |
SMART |
|
Pfam:STAT_alpha
|
138 |
319 |
2.2e-62 |
PFAM |
|
Pfam:STAT_bind
|
321 |
574 |
1.8e-130 |
PFAM |
|
SH2
|
582 |
663 |
2.84e-1 |
SMART |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000103114
AA Change: A475T
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000099403
Gene: ENSMUSG00000004040
AA Change: A475T
| Domain | Start | End | E-Value | Type |
|---|
|
STAT_int
|
2 |
122 |
3.03e-60 |
SMART |
|
Pfam:STAT_alpha
|
138 |
319 |
7.2e-62 |
PFAM |
|
Pfam:STAT_bind
|
321 |
574 |
5.7e-130 |
PFAM |
|
SH2
|
582 |
663 |
2.84e-1 |
SMART |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000127638
AA Change: A475T
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000120152
Gene: ENSMUSG00000004040
AA Change: A475T
| Domain | Start | End | E-Value | Type |
|---|
|
STAT_int
|
2 |
122 |
3.03e-60 |
SMART |
|
Pfam:STAT_alpha
|
141 |
319 |
6.8e-59 |
PFAM |
|
Pfam:STAT_bind
|
321 |
573 |
2.5e-80 |
PFAM |
|
SH2
|
582 |
663 |
2.84e-1 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000137093
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000137367
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000138438
AA Change: A449T
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000121677
Gene: ENSMUSG00000004040
AA Change: A449T
| Domain | Start | End | E-Value | Type |
|---|
|
STAT_int
|
2 |
123 |
5.47e-35 |
SMART |
|
coiled coil region
|
171 |
195 |
N/A |
INTRINSIC |
|
coiled coil region
|
243 |
265 |
N/A |
INTRINSIC |
|
Pfam:STAT_bind
|
295 |
548 |
9.2e-131 |
PFAM |
|
SH2
|
556 |
637 |
2.84e-1 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000146971
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000156645
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000151544
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000155972
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152601
|
| Meta Mutation Damage Score |
0.9425 |
| Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.6%
- 10x: 97.9%
- 20x: 93.8%
|
| Validation Efficiency |
86% (51/59) |
| MGI Phenotype |
FUNCTION: The protein encoded by this gene is a member of the STAT protein family. In response to cytokines and growth factors, STAT family members are phosphorylated by the receptor associated kinases, and then form homo- or heterodimers that translocate to the cell nucleus where they act as transcription activators. This protein is activated through phosphorylation in response to various cytokines and growth factors including IFNs, EGF, IL5, IL6, HGF, LIF and BMP2. This protein mediates the expression of a variety of genes in response to cell stimuli, and thus plays a key role in many cellular processes such as cell growth and apoptosis. The small GTPase Rac1 has been shown to bind and regulate the activity of this protein. PIAS3 protein is a specific inhibitor of this protein. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Sep 2015]
PHENOTYPE: Homozygotes for targeted null mutations die at embryonic day 6.5-7.5. Conditional, tissue specific mutants are variably viable and show diverse defects including obesity, diabetes, thermal dysregulation and infertility. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 48 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acacb |
G |
T |
5: 114,384,041 (GRCm39) |
R2190L |
probably damaging |
Het |
| Ankrd17 |
C |
T |
5: 90,433,702 (GRCm39) |
R689H |
probably damaging |
Het |
| Apol7b |
A |
T |
15: 77,307,967 (GRCm39) |
V176E |
probably damaging |
Het |
| Arsg |
T |
C |
11: 109,426,137 (GRCm39) |
F319S |
probably damaging |
Het |
| Bcar3 |
T |
A |
3: 122,316,932 (GRCm39) |
D634E |
probably benign |
Het |
| Bend7 |
T |
C |
2: 4,749,167 (GRCm39) |
W95R |
probably damaging |
Het |
| Cenpj |
A |
G |
14: 56,791,115 (GRCm39) |
|
probably null |
Het |
| Cfap91 |
G |
T |
16: 38,148,672 (GRCm39) |
T252N |
probably damaging |
Het |
| Clasrp |
A |
T |
7: 19,328,431 (GRCm39) |
Y116N |
probably damaging |
Het |
| Cldn17 |
T |
C |
16: 88,303,597 (GRCm39) |
E44G |
probably damaging |
Het |
| Cyfip1 |
G |
A |
7: 55,521,878 (GRCm39) |
E61K |
probably damaging |
Het |
| Dcaf13 |
A |
C |
15: 39,010,072 (GRCm39) |
M419L |
probably benign |
Het |
| Eml4 |
A |
G |
17: 83,753,472 (GRCm39) |
D269G |
possibly damaging |
Het |
| Fap |
T |
C |
2: 62,372,605 (GRCm39) |
Y258C |
probably damaging |
Het |
| Fdxr |
T |
A |
11: 115,160,672 (GRCm39) |
T288S |
probably benign |
Het |
| Frs3 |
T |
C |
17: 48,003,233 (GRCm39) |
|
probably benign |
Het |
| Gm5581 |
T |
A |
6: 131,145,363 (GRCm39) |
|
noncoding transcript |
Het |
| Gm7964 |
A |
G |
7: 83,405,743 (GRCm39) |
D187G |
probably benign |
Het |
| Gpc5 |
T |
C |
14: 115,607,250 (GRCm39) |
V284A |
probably benign |
Het |
| Hspa9 |
T |
C |
18: 35,082,076 (GRCm39) |
T177A |
possibly damaging |
Het |
| Ifi202b |
T |
A |
1: 173,791,365 (GRCm39) |
M438L |
probably benign |
Het |
| Ighv1-3 |
T |
C |
12: 114,445,239 (GRCm39) |
|
probably benign |
Het |
| Krt36 |
G |
T |
11: 99,996,139 (GRCm39) |
A95E |
probably benign |
Het |
| Krt9 |
C |
T |
11: 100,079,265 (GRCm39) |
S709N |
unknown |
Het |
| Lmntd1 |
A |
T |
6: 145,373,042 (GRCm39) |
S164T |
probably damaging |
Het |
| Or14c41 |
T |
A |
7: 86,234,486 (GRCm39) |
M1K |
probably null |
Het |
| Or2ag1b |
A |
T |
7: 106,288,853 (GRCm39) |
C28* |
probably null |
Het |
| Or52n4b |
G |
A |
7: 108,144,484 (GRCm39) |
A249T |
possibly damaging |
Het |
| Or5b94 |
C |
T |
19: 12,652,283 (GRCm39) |
T238I |
probably damaging |
Het |
| Or7a41 |
A |
T |
10: 78,871,223 (GRCm39) |
M198L |
probably benign |
Het |
| Papola |
T |
A |
12: 105,778,644 (GRCm39) |
F341I |
possibly damaging |
Het |
| Phf3 |
A |
G |
1: 30,859,785 (GRCm39) |
L914P |
probably damaging |
Het |
| Sec24d |
T |
C |
3: 123,087,230 (GRCm39) |
V132A |
probably benign |
Het |
| Serpini1 |
G |
A |
3: 75,547,606 (GRCm39) |
D373N |
probably damaging |
Het |
| Sigirr |
T |
C |
7: 140,671,300 (GRCm39) |
Y394C |
probably damaging |
Het |
| Slc29a4 |
G |
A |
5: 142,704,573 (GRCm39) |
E372K |
probably damaging |
Het |
| Slc7a4 |
C |
T |
16: 17,392,220 (GRCm39) |
V405I |
possibly damaging |
Het |
| Spatc1 |
T |
C |
15: 76,168,138 (GRCm39) |
L199P |
probably damaging |
Het |
| Srgap3 |
T |
C |
6: 112,772,775 (GRCm39) |
M149V |
possibly damaging |
Het |
| Srsf11 |
C |
T |
3: 157,728,981 (GRCm39) |
|
probably benign |
Het |
| Stat4 |
A |
G |
1: 52,113,898 (GRCm39) |
N203D |
probably damaging |
Het |
| Tanc1 |
T |
C |
2: 59,667,564 (GRCm39) |
|
probably null |
Het |
| Trav3-1 |
T |
C |
14: 52,818,449 (GRCm39) |
I41T |
probably benign |
Het |
| Usp34 |
T |
A |
11: 23,313,089 (GRCm39) |
D525E |
probably damaging |
Het |
| Vars1 |
T |
C |
17: 35,232,620 (GRCm39) |
V848A |
probably damaging |
Het |
| Vmn2r101 |
A |
T |
17: 19,809,769 (GRCm39) |
D185V |
probably benign |
Het |
| Wiz |
A |
G |
17: 32,576,671 (GRCm39) |
S628P |
probably benign |
Het |
| Zfp647 |
G |
A |
15: 76,796,285 (GRCm39) |
P125L |
probably damaging |
Het |
|
| Other mutations in Stat3 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01720:Stat3
|
APN |
11 |
100,794,484 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
IGL02289:Stat3
|
APN |
11 |
100,796,720 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
IGL03183:Stat3
|
APN |
11 |
100,793,582 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
Cunegonde
|
UTSW |
11 |
100,789,459 (GRCm39) |
missense |
probably damaging |
0.99 |
|
monostatos
|
UTSW |
11 |
100,785,931 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Pangloss
|
UTSW |
11 |
100,784,496 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
Stamatios
|
UTSW |
11 |
100,784,056 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Voltaire
|
UTSW |
11 |
100,802,093 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0143:Stat3
|
UTSW |
11 |
100,785,982 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R0395:Stat3
|
UTSW |
11 |
100,780,763 (GRCm39) |
splice site |
probably benign |
|
|
R0487:Stat3
|
UTSW |
11 |
100,794,469 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0589:Stat3
|
UTSW |
11 |
100,798,909 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R0800:Stat3
|
UTSW |
11 |
100,784,981 (GRCm39) |
splice site |
probably benign |
|
|
R1393:Stat3
|
UTSW |
11 |
100,779,591 (GRCm39) |
splice site |
probably null |
|
|
R1927:Stat3
|
UTSW |
11 |
100,785,655 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3819:Stat3
|
UTSW |
11 |
100,789,459 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4037:Stat3
|
UTSW |
11 |
100,783,951 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4391:Stat3
|
UTSW |
11 |
100,796,378 (GRCm39) |
intron |
probably benign |
|
|
R4598:Stat3
|
UTSW |
11 |
100,794,500 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4637:Stat3
|
UTSW |
11 |
100,784,056 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5479:Stat3
|
UTSW |
11 |
100,780,714 (GRCm39) |
unclassified |
probably benign |
|
|
R5909:Stat3
|
UTSW |
11 |
100,794,556 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5930:Stat3
|
UTSW |
11 |
100,784,496 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R6002:Stat3
|
UTSW |
11 |
100,794,569 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6431:Stat3
|
UTSW |
11 |
100,780,400 (GRCm39) |
missense |
possibly damaging |
0.79 |
|
R6816:Stat3
|
UTSW |
11 |
100,802,093 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8071:Stat3
|
UTSW |
11 |
100,784,807 (GRCm39) |
missense |
probably benign |
|
|
R8466:Stat3
|
UTSW |
11 |
100,785,924 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9146:Stat3
|
UTSW |
11 |
100,784,492 (GRCm39) |
missense |
probably benign |
0.26 |
|
R9337:Stat3
|
UTSW |
11 |
100,798,815 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9419:Stat3
|
UTSW |
11 |
100,784,738 (GRCm39) |
missense |
probably benign |
0.03 |
|
R9419:Stat3
|
UTSW |
11 |
100,780,357 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R9564:Stat3
|
UTSW |
11 |
100,784,614 (GRCm39) |
missense |
probably benign |
|
|
R9682:Stat3
|
UTSW |
11 |
100,785,593 (GRCm39) |
missense |
probably benign |
0.01 |
|
X0033:Stat3
|
UTSW |
11 |
100,783,918 (GRCm39) |
missense |
probably benign |
|
|
Z1176:Stat3
|
UTSW |
11 |
100,802,104 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
| Predicted Primers |
PCR Primer
(F):5'- CACTTGGATGAGAGAGTGACAC -3'
(R):5'- ATGCAGGCTGGTCTTTCTCC -3'
Sequencing Primer
(F):5'- AGAGTGACACTGACAGCCTGC -3'
(R):5'- GCTCCAGCCTGCACTTG -3'
|
| Posted On |
2017-02-28 |
Incidental Mutation