Incidental Mutation 'R5944:Cenpj'
ID 460494
Institutional Source Beutler Lab
Gene Symbol Cenpj
Ensembl Gene ENSMUSG00000064128
Gene Name centromere protein J
Synonyms 4932437H03Rik, Sas4
MMRRC Submission 044136-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R5944 (G1)
Quality Score 225
Status Validated
Chromosome 14
Chromosomal Location 56764218-56812882 bp(-) (GRCm39)
Type of Mutation critical splice donor site (2 bp from exon)
DNA Base Change (assembly) A to G at 56791115 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000153013 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000065302] [ENSMUST00000225951]
AlphaFold Q569L8
Predicted Effect probably null
Transcript: ENSMUST00000065302
SMART Domains Protein: ENSMUSP00000065949
Gene: ENSMUSG00000064128

DomainStartEndE-ValueType
low complexity region 60 76 N/A INTRINSIC
coiled coil region 140 185 N/A INTRINSIC
low complexity region 330 350 N/A INTRINSIC
low complexity region 547 570 N/A INTRINSIC
low complexity region 860 871 N/A INTRINSIC
coiled coil region 899 1046 N/A INTRINSIC
low complexity region 1144 1154 N/A INTRINSIC
Pfam:Tcp10_C 1167 1342 5.1e-90 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000225951
Predicted Effect probably benign
Transcript: ENSMUST00000229861
Meta Mutation Damage Score 0.9584 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 97.9%
  • 20x: 93.8%
Validation Efficiency 86% (51/59)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that belongs to the centromere protein family. During cell division, this protein plays a structural role in the maintenance of centrosome integrity and normal spindle morphology, and it is involved in microtubule disassembly at the centrosome. This protein can function as a transcriptional coactivator in the Stat5 signaling pathway, and also as a coactivator of NF-kappaB-mediated transcription, likely via its interaction with the coactivator p300/CREB-binding protein. Mutations in this gene are associated with primary autosomal recessive microcephaly, a disorder characterized by severely reduced brain size and mental retardation. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Apr 2012]
PHENOTYPE: Mice homozygous for null alleles exhibit embryonic lethality during early organogenesis and may show failure of embryo turning and absence of centrioles, cilia and centrosomes. Mice homozygous for a hypomorphic allele display partial lethality, dwarfism and a wide range of abnormalities. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acacb G T 5: 114,384,041 (GRCm39) R2190L probably damaging Het
Ankrd17 C T 5: 90,433,702 (GRCm39) R689H probably damaging Het
Apol7b A T 15: 77,307,967 (GRCm39) V176E probably damaging Het
Arsg T C 11: 109,426,137 (GRCm39) F319S probably damaging Het
Bcar3 T A 3: 122,316,932 (GRCm39) D634E probably benign Het
Bend7 T C 2: 4,749,167 (GRCm39) W95R probably damaging Het
Cfap91 G T 16: 38,148,672 (GRCm39) T252N probably damaging Het
Clasrp A T 7: 19,328,431 (GRCm39) Y116N probably damaging Het
Cldn17 T C 16: 88,303,597 (GRCm39) E44G probably damaging Het
Cyfip1 G A 7: 55,521,878 (GRCm39) E61K probably damaging Het
Dcaf13 A C 15: 39,010,072 (GRCm39) M419L probably benign Het
Eml4 A G 17: 83,753,472 (GRCm39) D269G possibly damaging Het
Fap T C 2: 62,372,605 (GRCm39) Y258C probably damaging Het
Fdxr T A 11: 115,160,672 (GRCm39) T288S probably benign Het
Frs3 T C 17: 48,003,233 (GRCm39) probably benign Het
Gm5581 T A 6: 131,145,363 (GRCm39) noncoding transcript Het
Gm7964 A G 7: 83,405,743 (GRCm39) D187G probably benign Het
Gpc5 T C 14: 115,607,250 (GRCm39) V284A probably benign Het
Hspa9 T C 18: 35,082,076 (GRCm39) T177A possibly damaging Het
Ifi202b T A 1: 173,791,365 (GRCm39) M438L probably benign Het
Ighv1-3 T C 12: 114,445,239 (GRCm39) probably benign Het
Krt36 G T 11: 99,996,139 (GRCm39) A95E probably benign Het
Krt9 C T 11: 100,079,265 (GRCm39) S709N unknown Het
Lmntd1 A T 6: 145,373,042 (GRCm39) S164T probably damaging Het
Or14c41 T A 7: 86,234,486 (GRCm39) M1K probably null Het
Or2ag1b A T 7: 106,288,853 (GRCm39) C28* probably null Het
Or52n4b G A 7: 108,144,484 (GRCm39) A249T possibly damaging Het
Or5b94 C T 19: 12,652,283 (GRCm39) T238I probably damaging Het
Or7a41 A T 10: 78,871,223 (GRCm39) M198L probably benign Het
Papola T A 12: 105,778,644 (GRCm39) F341I possibly damaging Het
Phf3 A G 1: 30,859,785 (GRCm39) L914P probably damaging Het
Sec24d T C 3: 123,087,230 (GRCm39) V132A probably benign Het
Serpini1 G A 3: 75,547,606 (GRCm39) D373N probably damaging Het
Sigirr T C 7: 140,671,300 (GRCm39) Y394C probably damaging Het
Slc29a4 G A 5: 142,704,573 (GRCm39) E372K probably damaging Het
Slc7a4 C T 16: 17,392,220 (GRCm39) V405I possibly damaging Het
Spatc1 T C 15: 76,168,138 (GRCm39) L199P probably damaging Het
Srgap3 T C 6: 112,772,775 (GRCm39) M149V possibly damaging Het
Srsf11 C T 3: 157,728,981 (GRCm39) probably benign Het
Stat3 C T 11: 100,785,931 (GRCm39) A449T probably damaging Het
Stat4 A G 1: 52,113,898 (GRCm39) N203D probably damaging Het
Tanc1 T C 2: 59,667,564 (GRCm39) probably null Het
Trav3-1 T C 14: 52,818,449 (GRCm39) I41T probably benign Het
Usp34 T A 11: 23,313,089 (GRCm39) D525E probably damaging Het
Vars1 T C 17: 35,232,620 (GRCm39) V848A probably damaging Het
Vmn2r101 A T 17: 19,809,769 (GRCm39) D185V probably benign Het
Wiz A G 17: 32,576,671 (GRCm39) S628P probably benign Het
Zfp647 G A 15: 76,796,285 (GRCm39) P125L probably damaging Het
Other mutations in Cenpj
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00565:Cenpj APN 14 56,790,487 (GRCm39) missense probably benign 0.04
IGL00969:Cenpj APN 14 56,802,420 (GRCm39) missense possibly damaging 0.68
IGL01152:Cenpj APN 14 56,789,757 (GRCm39) missense probably benign 0.01
IGL01475:Cenpj APN 14 56,802,502 (GRCm39) missense possibly damaging 0.80
IGL01548:Cenpj APN 14 56,769,776 (GRCm39) missense probably benign 0.00
IGL01893:Cenpj APN 14 56,790,931 (GRCm39) missense probably damaging 1.00
IGL02647:Cenpj APN 14 56,767,536 (GRCm39) missense probably damaging 0.99
IGL02683:Cenpj APN 14 56,790,409 (GRCm39) missense possibly damaging 0.88
IGL02691:Cenpj APN 14 56,789,547 (GRCm39) missense probably benign 0.28
IGL03008:Cenpj APN 14 56,764,406 (GRCm39) missense probably benign 0.39
R0206:Cenpj UTSW 14 56,801,427 (GRCm39) missense probably benign 0.00
R0208:Cenpj UTSW 14 56,801,427 (GRCm39) missense probably benign 0.00
R0356:Cenpj UTSW 14 56,786,953 (GRCm39) missense probably damaging 1.00
R0942:Cenpj UTSW 14 56,792,666 (GRCm39) unclassified probably benign
R1392:Cenpj UTSW 14 56,772,311 (GRCm39) splice site probably benign
R1564:Cenpj UTSW 14 56,789,523 (GRCm39) missense probably benign 0.43
R1671:Cenpj UTSW 14 56,802,502 (GRCm39) missense probably damaging 0.99
R1889:Cenpj UTSW 14 56,796,182 (GRCm39) missense probably benign 0.43
R2059:Cenpj UTSW 14 56,801,412 (GRCm39) missense possibly damaging 0.94
R2140:Cenpj UTSW 14 56,764,389 (GRCm39) missense probably damaging 1.00
R2509:Cenpj UTSW 14 56,769,694 (GRCm39) missense probably null 0.98
R2866:Cenpj UTSW 14 56,789,637 (GRCm39) missense probably benign 0.01
R3813:Cenpj UTSW 14 56,790,679 (GRCm39) missense probably benign 0.05
R4620:Cenpj UTSW 14 56,772,911 (GRCm39) missense probably damaging 0.99
R4670:Cenpj UTSW 14 56,790,840 (GRCm39) missense possibly damaging 0.80
R4671:Cenpj UTSW 14 56,790,840 (GRCm39) missense possibly damaging 0.80
R4765:Cenpj UTSW 14 56,787,002 (GRCm39) nonsense probably null
R4915:Cenpj UTSW 14 56,791,175 (GRCm39) missense probably damaging 0.98
R4930:Cenpj UTSW 14 56,772,238 (GRCm39) nonsense probably null
R5088:Cenpj UTSW 14 56,791,148 (GRCm39) missense probably damaging 1.00
R5523:Cenpj UTSW 14 56,789,880 (GRCm39) missense probably benign 0.00
R5527:Cenpj UTSW 14 56,764,440 (GRCm39) missense probably damaging 1.00
R5717:Cenpj UTSW 14 56,790,978 (GRCm39) frame shift probably null
R5975:Cenpj UTSW 14 56,801,523 (GRCm39) missense possibly damaging 0.92
R6019:Cenpj UTSW 14 56,772,272 (GRCm39) missense probably benign 0.01
R6291:Cenpj UTSW 14 56,789,433 (GRCm39) missense probably benign 0.01
R6948:Cenpj UTSW 14 56,790,683 (GRCm39) missense probably damaging 0.96
R7212:Cenpj UTSW 14 56,790,109 (GRCm39) missense probably benign 0.00
R7461:Cenpj UTSW 14 56,764,501 (GRCm39) nonsense probably null
R7613:Cenpj UTSW 14 56,764,501 (GRCm39) nonsense probably null
R7634:Cenpj UTSW 14 56,780,257 (GRCm39) missense probably benign 0.00
R7837:Cenpj UTSW 14 56,796,185 (GRCm39) missense probably benign 0.02
R8722:Cenpj UTSW 14 56,772,975 (GRCm39) missense probably damaging 1.00
R8810:Cenpj UTSW 14 56,796,076 (GRCm39) missense possibly damaging 0.78
R8813:Cenpj UTSW 14 56,790,355 (GRCm39) missense probably damaging 1.00
R8842:Cenpj UTSW 14 56,780,329 (GRCm39) missense probably damaging 0.97
R8916:Cenpj UTSW 14 56,790,352 (GRCm39) missense probably damaging 1.00
R8987:Cenpj UTSW 14 56,764,383 (GRCm39) missense possibly damaging 0.75
R9128:Cenpj UTSW 14 56,780,319 (GRCm39) missense probably damaging 1.00
R9227:Cenpj UTSW 14 56,802,176 (GRCm39) missense possibly damaging 0.51
R9229:Cenpj UTSW 14 56,802,176 (GRCm39) missense possibly damaging 0.51
R9624:Cenpj UTSW 14 56,802,387 (GRCm39) missense probably benign 0.01
R9686:Cenpj UTSW 14 56,790,048 (GRCm39) missense probably benign 0.01
R9717:Cenpj UTSW 14 56,790,453 (GRCm39) missense probably benign 0.02
RF007:Cenpj UTSW 14 56,767,505 (GRCm39) critical splice donor site probably null
Z1177:Cenpj UTSW 14 56,790,336 (GRCm39) missense possibly damaging 0.46
Predicted Primers PCR Primer
(F):5'- TAAACCTAGCTAAACCTTCTCCTCG -3'
(R):5'- TGGTCCTGGAGAATGCTAGC -3'

Sequencing Primer
(F):5'- CTCCTCGTTTTAAAAATGGTTGC -3'
(R):5'- CAGGCTGAGGTATTGACTATTACACG -3'
Posted On 2017-02-28